bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0177915
HIT000529172_02 (
ENST00000431238
)
(SMP-30/Gluconolactonase/LRE-like region domain containing protein.)
genome : 120,410 - 122,712 (2,303)
query : 1 - 290 (290/290)
3 exons
identity = 0.986
5'(0.982;1.000;0.939)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177915)
HIX0159614
HIT000004659_02
(
AK002185
)
Representative transcript
(PI-PLC X domain-containing protein 1.)
genome : 142,989 - 170,020 (27,032)
query : 1 - 2,087 (2,087/2,087)
9 exons
identity = 0.998
5'(0.986;1.000;1.000;0.993;1.000;1.000;1.000;
1.000;0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, nucl 6, extr 4, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159614)
HIX0159614
HIT000482133_02 (
ENST00000399012
)
(PI-PLC X domain-containing protein 1.)
genome : 142,989 - 170,020 (27,032)
query : 1 - 5,287 (5,287/5,287)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, nucl 6, extr 4, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159614)
HIX0159614
HIT000657705_02 (
NR_028057
)
(PI-PLC X domain-containing protein 1.)
genome : 142,991 - 170,021 (27,031)
query : 1 - 2,086 (2,086/2,103)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, nucl 6, extr 4, mito 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159614)
HIX0159614
HIT000588452_02 (
ENST00000484611
)
(PI-PLC X domain-containing protein 1.)
genome : 142,991 - 158,204 (15,214)
query : 1 - 540 (540/540)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 6.83333, nucl 6.5, cyto 6,
cyto_pero 3.83333, mito_nucl 3.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159614)
HIX0159614
HIT000528857_02 (
ENST00000430923
)
(PI-PLC X domain-containing protein 1.)
genome : 143,020 - 158,296 (15,277)
query : 1 - 587 (587/587)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 11.3333, cyto 9, nucl 8.5,
cyto_pero 5.66667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159614)
HIX0260931
HIT000542996_02 (
ENST00000445062
)
(PLC-like phosphodiesterase, TIM beta/alpha-barrel domain containing protein.)
genome : 147,722 - 155,536 (7,815)
query : 1 - 555 (555/555)
4 exons
identity = 0.991
3'(0.971;0.985;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 5, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260931)
HIX0159614
HIT000362935_02 (
ENST00000381657
)
(PI-PLC X domain-containing protein 1.)
genome : 147,859 - 170,023 (22,165)
query : 1 - 5,507 (5,507/5,507)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, nucl 6, extr 4, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159614)
HIX0260931
HIT000527115_02 (
ENST00000429181
)
(PLC-like phosphodiesterase, TIM beta/alpha-barrel domain containing protein.)
genome : 147,861 - 155,454 (7,594)
query : 1 - 469 (469/469)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, nucl 6, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260931)
HIX0159614
HIT000317360_02 (
NM_018390
)
(PI-PLC X domain-containing protein 1.)
genome : 148,061 - 170,021 (21,961)
query : 1 - 5,303 (5,303/5,320)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, nucl 6, extr 4, mito 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159614)
HIX0159614
HIT000261278_04
(
BC064136
)
(Hypothetical short protein.)
genome : 148,079 - 170,021 (21,943)
query : 1 - 925 (925/962)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11.5, cyto 11, extr 10, nucl 6, mito 5,
extr_plas 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159614)
HIX0159614
HIT000032168_02
(
BC005028
)
(PI-PLC X domain-containing protein 1.)
genome : 148,129 - 170,021 (21,893)
query : 1 - 1,863 (1,863/1,880)
8 exons
identity = 0.999
5'(1.000;0.993;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR000909 : Phospholipase C, phosphatidylinositol-specific , X domain
IPR017946 : PLC-like phosphodiesterase, TIM beta/alpha-barrel domain
GO :
0006629 : Biological Process : lipid metabolic process
0008081 : Molecular Function : phosphoric diester hydrolase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, nucl 6, extr 4, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159614)
HIX0159614
HIT000362941_02 (
ENST00000381663
)
(PI-PLC X domain-containing protein 1.)
genome : 148,129 - 170,020 (21,892)
query : 1 - 1,863 (1,863/1,863)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, nucl 6, extr 4, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159614)
HIX0260931
HIT000092558_02
(
BC032072
)
Representative transcript
(Phospholipase C, phosphatidylinositol-specific , X domain containing protein.)
genome : 148,155 - 159,881 (11,727)
query : 1 - 947 (947/947)
6 exons
identity = 0.999
3'(1.000;0.993;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000909 : Phospholipase C, phosphatidylinositol-specific , X domain
IPR017946 : PLC-like phosphodiesterase, TIM beta/alpha-barrel domain
GO :
0006629 : Biological Process : lipid metabolic process
0008081 : Molecular Function : phosphoric diester hydrolase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 10.8333, nucl 9, cyto 8.5,
cyto_pero 5.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260931)
HIX0260931
HIT000085915_02
(
BC000888
)
(Phospholipase C, phosphatidylinositol-specific , X domain containing protein.)
genome : 148,155 - 159,873 (11,719)
query : 1 - 939 (939/939)
6 exons
identity = 0.999
3'(1.000;0.993;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000909 : Phospholipase C, phosphatidylinositol-specific , X domain
IPR017946 : PLC-like phosphodiesterase, TIM beta/alpha-barrel domain
GO :
0006629 : Biological Process : lipid metabolic process
0008081 : Molecular Function : phosphoric diester hydrolase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11.3333, extr 11, cyto 9.5, nucl 9,
cyto_pero 5.83333, mito_nucl 5.83333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260931)
HIX0159614
HIT000540953_02 (
ENST00000443019
)
(PI-PLC X domain-containing protein 1.)
genome : 149,830 - 155,496 (5,667)
query : 1 - 284 (284/284)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, nucl 7, cyto 4, mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159614)
HIX0260931
HIT000513271_02 (
ENST00000415337
)
(Phospholipase C, phosphatidylinositol-specific , X domain containing protein.)
genome : 150,132 - 158,306 (8,175)
query : 1 - 579 (579/579)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12.3333, extr 12, cyto 9.5, nucl 9,
cyto_pero 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260931)
HIX0260931
HIT000545406_02 (
ENST00000447472
)
(Phospholipase C, phosphatidylinositol-specific , X domain containing protein.)
genome : 150,146 - 158,296 (8,151)
query : 1 - 587 (587/587)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 11.3333, cyto 9, nucl 8.5,
cyto_pero 5.66667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260931)
HIX0260931
HIT000546411_02 (
ENST00000448477
)
(PLC-like phosphodiesterase, TIM beta/alpha-barrel domain containing protein.)
genome : 150,401 - 157,424 (7,024)
query : 1 - 828 (828/828)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 6.83333, nucl 6.5, cyto 6,
cyto_pero 3.83333, mito_nucl 3.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260931)
HIX0159614
HIT000015873_04
(
AK091006
)
(Hypothetical short protein.)
genome : 167,539 - 170,020 (2,482)
query : 1 - 2,483 (2,483/2,483)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11.5, cyto 11, extr 10, nucl 6, mito 5,
extr_plas 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159614)
HIX0159614
HIT000022200_04
(
AK097346
)
(Hypothetical short protein.)
genome : 168,280 - 170,020 (1,741)
query : 1 - 1,740 (1,740/1,740)
1 exon
identity = 0.990
5'(0.990)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11.5, cyto 11, extr 10, nucl 6, mito 5,
extr_plas 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159614)
HIX0159614
HIT000093176_04
(
BC033659
)
(Hypothetical protein.)
genome : 168,528 - 170,021 (1,494)
query : 12 - 1,504 (1,493/1,540)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 0.993
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, extr 5, cyto_nucl 5, nucl 4.5,
cyto_pero 4.33333, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159614)
HIX0177592
HIT000124467_04 (
ENST00000326153
)
(Putative GTP-binding protein 6; Pseudoautosomal GTP-binding protein-like;)
genome : 170,025 - 180,886 (10,862)
query : 1 - 1,527 (1,527/1,527)
7 exons
identity = 0.998
3'(0.992;0.997;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, mito 12, cyto_nucl 9.5, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177592)
HIX0177592
HIT000081563_04
(
AK074528
)
Representative transcript
(Putative GTP-binding protein 6; Pseudoautosomal GTP-binding protein-like;)
genome : 170,025 - 179,126 (9,102)
query : 5 - 2,134 (2,130/2,134)
5 exons
identity = 0.986
3'(0.992;0.997;1.000;1.000;0.975)5'
coverage = 0.998
InterPro :
IPR006073 : GTP binding domain
IPR016496 : GTPase HflX
GO :
0005525 : Molecular Function : GTP binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 10.5, mito 9, cyto 8, nucl 7, E.R._mito 6,
extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177592)
HIX0177592
HIT000589143_02 (
ENST00000485332
)
(Putative GTP-binding protein 6; Pseudoautosomal GTP-binding protein-like;)
genome : 171,196 - 179,130 (7,935)
query : 1 - 2,016 (2,016/2,016)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 10.5, mito 9, cyto 8, nucl 7, E.R._mito 6,
extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177592)
HIX0177592
HIT000009736_04
(
AK026462
)
(Putative GTP-binding protein 6; Pseudoautosomal GTP-binding protein-like;)
genome : 171,426 - 178,257 (6,832)
query : 7 - 802 (796/884)
4 exons
identity = 0.973
3'(0.944;0.974;1.000;1.000)5'
coverage = 0.993
InterPro :
IPR016496 : GTPase HflX
GO :
0005525 : Molecular Function : GTP binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, mito 6, nucl 3, cyto 3, cyto_nucl 3,
E.R._mito 3, mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177592)
HIX0177592
HIT000483640_03 (
ENST00000400701
)
(Putative GTP-binding protein 6; Pseudoautosomal GTP-binding protein-like;)
genome : 171,417 - 180,884 (9,468)
query : 1 - 1,186 (1,186/1,186)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 13.5, cyto 11.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177592)
HIX0177592
HIT000022726_04
(
AK097872
)
(Putative GTP-binding protein 6; Pseudoautosomal GTP-binding protein-like;)
genome : 171,427 - 179,516 (8,090)
query : 1 - 2,235 (2,235/2,235)
5 exons
identity = 0.952
3'(1.000;1.000;1.000;0.926;0.972)5'
coverage = 1.000
InterPro :
IPR006073 : GTP binding domain
IPR016496 : GTPase HflX
GO :
0005525 : Molecular Function : GTP binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 10.5, mito 9, cyto 8, nucl 7, E.R._mito 6,
extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177592)
HIX0177827
HIT000475208_03 (
ENST00000391707
)
(Hypothetical protein.)
genome : 231,725 - 232,446 (722)
query : 1 - 428 (428/428)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, extr 11, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177827)
HIX0177793
HIT000029010_04
(
AL834280
)
Representative transcript
(Hypothetical protein.)
genome : 242,761 - 245,010 (2,250)
query : 1 - 2,250 (2,250/2,318)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto 7, nucl 5, cyto_pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177793)
HIX0177602
HIT000204227_04 (
NM_013239
)
(Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta; PP2A subunit B isoform PR48; Protein phosphatase 2A 48 kDa regulatory subunit;)
genome : 244,668 - 297,690 (53,023)
query : 1 - 2,426 (2,426/2,443)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 14, nucl 10.5, mito 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177602)
HIX0177602
HIT000397348_04 (
ENST00000390665
)
(Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta; PP2A subunit B isoform PR48; Protein phosphatase 2A 48 kDa regulatory subunit;)
genome : 244,698 - 297,445 (52,748)
query : 1 - 2,151 (2,151/2,151)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.1.3.16
KEGG pathway :
04660 : T cell receptor signaling pathway (2)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 14, nucl 10.5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177602)
HIX0177602
HIT000260889_04
(
BC063429
)
Representative transcript
(Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta; PP2A subunit B isoform PR48; Protein phosphatase 2A 48 kDa regulatory subunit;)
genome : 244,975 - 297,445 (52,471)
query : 1 - 1,874 (1,874/1,930)
13 exons
identity = 0.995
3'(0.986;0.981;0.992;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.989;1.000)5'
coverage = 1.000
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 14, nucl 10.5, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177602)
HIX0177602
HIT000035192_04
(
BC011180
)
(Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta; PP2A subunit B isoform PR48; Protein phosphatase 2A 48 kDa regulatory subunit;)
genome : 244,975 - 256,327 (11,353)
query : 1 - 896 (896/922)
7 exons
identity = 0.998
3'(1.000;0.991;0.992;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, extr 6, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177602)
HIX0177602
HIT000026135_04
(
AL157501
)
(Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta; PP2A subunit B isoform PR48; Protein phosphatase 2A 48 kDa regulatory subunit;)
genome : 244,973 - 252,191 (7,219)
query : 1 - 832 (832/851)
5 exons
identity = 0.990
3'(0.986;0.981;0.992;1.000;0.993)5'
coverage = 1.000
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 11, cyto_nucl 11, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177602)
HIX0177602
HIT000034147_04
(
BC009032
)
(Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta; PP2A subunit B isoform PR48; Protein phosphatase 2A 48 kDa regulatory subunit;)
genome : 244,975 - 252,446 (7,472)
query : 1 - 1,076 (1,076/1,090)
5 exons
identity = 0.982
3'(0.989;0.991;0.992;1.000;0.963)5'
coverage = 1.000
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 11, cyto_nucl 11, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177602)
HIX0177602
HIT000071908_04
(
AF155098
)
(Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta; PP2A subunit B isoform PR48; Protein phosphatase 2A 48 kDa regulatory subunit;)
genome : 244,970 - 256,325 (11,356)
query : 1 - 899 (899/900)
7 exons
identity = 0.991
3'(0.982;0.981;0.992;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, nucl 7, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177602)
HIX0177602
HIT000583504_02 (
ENST00000479438
)
(Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta; PP2A subunit B isoform PR48; Protein phosphatase 2A 48 kDa regulatory subunit;)
genome : 244,970 - 252,446 (7,477)
query : 1 - 1,090 (1,090/1,090)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 9.5, extr 9, cyto_nucl 8, mito 7, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177602)
HIX0177602
HIT000329072_04
(
AB209137
)
(Hypothetical protein.)
genome : 244,974 - 258,059 (13,086)
query : 1 - 5,814 (5,814/5,814)
8 exons
identity = 0.991
3'(0.992;0.992;1.000;0.976;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, cyto 7, extr 6, nucl 6, cyto_pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177602)
HIX0177602
HIT000581268_02 (
ENST00000477110
)
(Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta; PP2A subunit B isoform PR48; Protein phosphatase 2A 48 kDa regulatory subunit;)
genome : 244,974 - 258,059 (13,086)
query : 1 - 5,802 (5,802/5,802)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, mito 8, cyto_nucl 7, nucl 6.5, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177602)
HIX0177602
HIT000071027_04
(
AF135016
)
(Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta; PP2A subunit B isoform PR48; Protein phosphatase 2A 48 kDa regulatory subunit;)
genome : 244,976 - 272,277 (27,302)
query : 1 - 1,482 (1,482/1,482)
12 exons
identity = 0.999
3'(1.000;0.991;0.992;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.1.3.16
KEGG pathway :
04660 : T cell receptor signaling pathway (2)
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12, mito 10, cyto_nucl 10, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177602)
HIX0177602
HIT000572749_02 (
ENST00000468169
)
(Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta; PP2A subunit B isoform PR48; Protein phosphatase 2A 48 kDa regulatory subunit;)
genome : 249,348 - 256,364 (7,017)
query : 1 - 713 (713/713)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, extr 12, cyto_nucl 8.5, mito 2, pero 2,
mito_pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177602)
HIX0177602
HIT000588219_02 (
ENST00000484364
)
(Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta; PP2A subunit B isoform PR48; Protein phosphatase 2A 48 kDa regulatory subunit;)
genome : 251,500 - 256,361 (4,862)
query : 1 - 732 (732/732)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21.5, cyto_mito 12.8333, extr 5,
cyto_nucl 3.33333, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177602)
HIX0177602
HIT000581773_02 (
ENST00000477636
)
(Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta; PP2A subunit B isoform PR48; Protein phosphatase 2A 48 kDa regulatory subunit;)
genome : 252,646 - 257,249 (4,604)
query : 1 - 519 (519/519)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, extr 7, cyto_nucl 6.5, E.R._mito 6.5,
cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177602)
HIX0177602
HIT000488130_02
(
AK293506
)
(Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta; PP2A subunit B isoform PR48; Protein phosphatase 2A 48 kDa regulatory subunit;)
genome : 255,631 - 297,690 (42,060)
query : 1 - 1,998 (1,998/1,998)
8 exons
identity = 0.997
3'(0.995;1.000;1.000;1.000;1.000;1.000;1.000;
0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12, nucl 11, cyto 11, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177602)
HIX0177602
HIT000543726_02 (
ENST00000445792
)
(Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta; PP2A subunit B isoform PR48; Protein phosphatase 2A 48 kDa regulatory subunit;)
genome : 255,631 - 297,690 (42,060)
query : 1 - 1,998 (1,998/1,998)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12.5, cyto 12, nucl 11, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177602)
HIX0177602
HIT000599942_02 (
ENST00000496630
)
(Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta; PP2A subunit B isoform PR48; Protein phosphatase 2A 48 kDa regulatory subunit;)
genome : 257,372 - 272,251 (14,880)
query : 1 - 458 (458/458)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto_nucl 9.5, cyto 9, nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177602)
HIX0177602
HIT000580079_02 (
ENST00000475859
)
(Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta; PP2A subunit B isoform PR48; Protein phosphatase 2A 48 kDa regulatory subunit;)
genome : 257,455 - 258,573 (1,119)
query : 1 - 408 (408/408)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, nucl 6.5, cyto_nucl 6, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177602)
HIX0177602
HIT000362903_04 (
ENST00000381625
)
(Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit delta; PP2A B''-PR59; PP2A PR59; Protein phosphatase 2A, 59 kDa regulatory subunit B; Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha;)
genome : 258,346 - 284,779 (26,434)
query : 1 - 782 (782/782)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 15, extr 7, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177602)
HIX0177991
HIT000550078_02 (
ENST00000452144
)
(Calycin domain containing protein.)
genome : 434,510 - 434,837 (328)
query : 1 - 328 (328/328)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 3.5, cyto_nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177991)
HIX0177920
HIT000529853_02 (
ENST00000431919
)
(Hypothetical short protein.)
genome : 455,971 - 456,087 (117)
query : 1 - 117 (117/117)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
This sequence is too short.
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177920)
HIX0213648
eHIT000025539 ( ESTsASS_Y_1 )
Representative transcript
(Non-protein coding transcript.)
genome : 508,408 - 509,593 (1,186)
query : 1 - 384 (384/384)
10 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213648)
ESTs used for assembly :
DB248024
HIX0177650
HIT000128732_04 (
ENST00000334060
)
(Short stature homeobox protein isoform SHOXb.)
genome : 535,079 - 570,146 (35,068)
query : 1 - 1,951 (1,951/1,951)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177650)
HIX0177650
HIT000317060_04 (
NM_006883
)
(Short stature homeobox protein isoform SHOXb.)
genome : 535,079 - 570,146 (35,068)
query : 1 - 1,951 (1,951/1,951)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177650)
HIX0177650
HIT000222126_04
(
U89331
)
Representative transcript
(Short stature homeobox protein; Pseudoautosomal homeobox-containing osteogenic protein; Short stature homeobox-containing protein;)
genome : 535,079 - 562,318 (27,240)
query : 1 - 4,565 (4,565/4,565)
7 exons
identity = 0.988
5'(0.985;0.999;0.995;1.000;1.000;0.987;0.981)3'
coverage = 1.000
InterPro :
IPR000047 : Helix-turn-helix motif
IPR003654 : OAR domain
IPR017970 : Homeobox, conserved site
GO :
0000976 : Molecular Function : transcription regulatory region sequence-specific DNA binding
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177650)
HIX0177650
HIT000315348_04 (
NM_000451
)
(Short stature homeobox protein; Pseudoautosomal homeobox-containing osteogenic protein; Short stature homeobox-containing protein;)
genome : 535,079 - 557,558 (22,480)
query : 1 - 3,757 (3,757/3,757)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177650)
HIX0177650
HIT000362856_04 (
ENST00000381578
)
(Short stature homeobox protein; Pseudoautosomal homeobox-containing osteogenic protein; Short stature homeobox-containing protein;)
genome : 535,079 - 557,558 (22,480)
query : 1 - 3,757 (3,757/3,757)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177650)
HIX0177650
HIT000325662_04
(
Y11535
)
(Short stature homeobox protein isoform SHOXb.)
genome : 541,542 - 570,146 (28,605)
query : 1 - 1,350 (1,350/1,351)
5 exons
identity = 0.996
5'(1.000;0.986;1.000;1.000;0.997)3'
coverage = 0.999
InterPro :
IPR000047 : Helix-turn-helix motif
IPR017970 : Homeobox, conserved site
GO :
0000976 : Molecular Function : transcription regulatory region sequence-specific DNA binding
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177650)
HIX0177650
HIT000362853_04 (
ENST00000381575
)
(Short stature homeobox protein isoform SHOXb.)
genome : 541,542 - 570,146 (28,605)
query : 1 - 1,351 (1,351/1,351)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177650)
HIX0177650
HIT000672146_02 (
ENST00000558872
)
(Short stature homeobox protein; Pseudoautosomal homeobox-containing osteogenic protein; Short stature homeobox-containing protein;)
genome : 541,542 - 562,318 (20,777)
query : 1 - 2,366 (2,366/2,366)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 17.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177650)
HIX0177650
HIT000673252_02 (
ENST00000560001
)
(Short stature homeobox protein isoform SHOXb.)
genome : 541,542 - 562,316 (20,775)
query : 1 - 1,059 (1,059/1,059)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 17
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177650)
HIX0177650
HIT000325663_04
(
Y11536
)
(Short stature homeobox protein; Pseudoautosomal homeobox-containing osteogenic protein; Short stature homeobox-containing protein;)
genome : 541,542 - 556,303 (14,762)
query : 1 - 1,890 (1,890/1,892)
5 exons
identity = 0.994
5'(1.000;1.000;1.000;1.000;0.990)3'
coverage = 0.999
InterPro :
IPR000047 : Helix-turn-helix motif
IPR003654 : OAR domain
IPR017970 : Homeobox, conserved site
GO :
0000976 : Molecular Function : transcription regulatory region sequence-specific DNA binding
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177650)
HIX0177650
HIT000668320_02 (
ENST00000554971
)
(Short stature homeobox protein; Pseudoautosomal homeobox-containing osteogenic protein; Short stature homeobox-containing protein;)
genome : 541,542 - 556,303 (14,762)
query : 1 - 1,902 (1,902/1,902)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177650)
HIX0177650
HIT000673063_02 (
ENST00000559808
)
(Short stature homeobox protein; Pseudoautosomal homeobox-containing osteogenic protein; Short stature homeobox-containing protein;)
genome : 541,542 - 551,613 (10,072)
query : 1 - 723 (723/723)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 12.5, extr 11, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177650)
HIX0260949
HIT000665532_08 (
ENST00000551990
)
(Non-protein coding transcript.)
genome : 677,703 - 677,811 (109)
query : 2 - 108 (107/108)
1 exon
identity = 0.963
5'(0.963)3'
coverage = 0.991
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260949)
HIX0260949
HIT000688742_08 (
ENST00000576725
)
(Non-protein coding transcript.)
genome : 677,703 - 677,811 (109)
query : 2 - 108 (107/108)
1 exon
identity = 0.963
5'(0.963)3'
coverage = 0.991
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260949)
HIX0260949
HIT000706076_08 (
ENST00000594269
)
(Non-protein coding transcript.)
genome : 677,703 - 677,811 (109)
query : 2 - 108 (107/108)
1 exon
identity = 0.963
5'(0.963)3'
coverage = 0.991
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260949)
HIX0260949
HIT000707918_08 (
ENST00000596129
)
(Non-protein coding transcript.)
genome : 677,703 - 677,811 (109)
query : 2 - 108 (107/108)
1 exon
identity = 0.963
5'(0.963)3'
coverage = 0.991
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260949)
HIX0260949
HIT000708920_08 (
ENST00000597139
)
(Non-protein coding transcript.)
genome : 677,703 - 677,811 (109)
query : 2 - 108 (107/108)
1 exon
identity = 0.963
5'(0.963)3'
coverage = 0.991
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260949)
HIX0177816
HIT000442570_10
(
DQ576039
)
Representative transcript
(Non-protein coding transcript.)
genome : 750,014 - 750,044 (31)
query : 1 - 31 (31/31)
1 exon
identity = 0.968
5'(0.968)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177816)
HIX0177874
HIT000518799_02 (
ENST00000420865
)
(Hypothetical protein.)
genome : 900,956 - 905,084 (4,129)
query : 1 - 572 (572/588)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 23, extr 5, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177874)
HIX0177874
HIT000681634_02 (
ENST00000568661
)
(Hypothetical protein.)
genome : 900,956 - 905,084 (4,129)
query : 1 - 572 (572/588)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 23, extr 5, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177874)
HIX0177770
HIT000534408_02 (
ENST00000436474
)
(Ribosomal protein L14 domain containing protein.)
genome : 919,238 - 920,836 (1,599)
query : 1 - 730 (730/730)
3 exons
identity = 0.986
3'(1.000;1.000;0.976)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto 10, mito_nucl 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177770)
HIX0177770
HIT000682269_02 (
ENST00000569325
)
(Ribosomal protein L14 domain containing protein.)
genome : 919,238 - 920,836 (1,599)
query : 1 - 730 (730/730)
3 exons
identity = 0.986
3'(1.000;1.000;0.976)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto 10, mito_nucl 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177770)
HIX0159631
HIT000362845_05 (
ENST00000381567
)
(Fibronectin type III domain containing protein.)
genome : 1,264,890 - 1,281,527 (16,638)
query : 1 - 771 (771/771)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 23.5, extr_plas 14, extr 3.5, E.R. 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159631)
HIX0159631
HIT000572229_02 (
ENST00000467626
)
(Fibronectin type III domain containing protein.)
genome : 1,264,894 - 1,281,616 (16,723)
query : 1 - 1,035 (1,035/1,035)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159631)
HIX0159631
HIT000483738_05 (
ENST00000400841
)
(Fibronectin type III domain containing protein.)
genome : 1,264,894 - 1,281,530 (16,637)
query : 1 - 770 (770/770)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 23.5, extr_plas 14, extr 3.5, E.R. 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159631)
HIX0159631
HIT000362844_03 (
ENST00000381566
)
(Fibronectin type III domain containing protein.)
genome : 1,267,790 - 1,281,527 (13,738)
query : 1 - 702 (702/702)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159631)
HIX0159621
HIT000317035_02 (
NM_006140
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,693 - 1,378,828 (41,136)
query : 1 - 1,853 (1,853/1,855)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 9, E.R. 6, mito 5.5, extr_plas 5.5,
mito_pero 5.5, pero 4.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000317889_02 (
NM_172245
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,693 - 1,378,828 (41,136)
query : 1 - 1,829 (1,829/1,831)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 9, E.R. 6, mito 5.5, extr_plas 5.5,
mito_pero 5.5, pero 4.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000317890_02 (
NM_172246
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,693 - 1,378,828 (41,136)
query : 1 - 1,674 (1,674/1,676)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 5, cyto 4, mito_nucl 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000317893_04 (
NM_172249
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,693 - 1,378,828 (41,136)
query : 1 - 1,456 (1,456/1,458)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000561979_02 (
NM_001161529
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,693 - 1,378,828 (41,136)
query : 1 - 1,981 (1,981/1,983)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 9, E.R. 6, mito 5.5, extr_plas 5.5,
mito_pero 5.5, pero 4.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000561982_02 (
NM_001161532
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform h.)
genome : 1,337,693 - 1,378,828 (41,136)
query : 1 - 1,622 (1,622/1,624)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 11, nucl 7.5, plas 6, cyto_nucl 5.5,
mito_pero 5.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000563622_02 (
NR_027760
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,693 - 1,378,828 (41,136)
query : 1 - 1,717 (1,717/1,719)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto 3, nucl 2, mito 2, mito_nucl 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000314796_02 (
ENST00000361536
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,693 - 1,378,828 (41,136)
query : 1 - 1,756 (1,756/1,756)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, nucl 3, cyto 3, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000530252_02 (
ENST00000432318
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,693 - 1,378,828 (41,136)
query : 1 - 1,981 (1,981/1,981)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 9, E.R. 6, mito 5.5, extr_plas 5.5,
mito_pero 5.5, pero 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000602420_02 (
ENST00000501036
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform h.)
genome : 1,337,693 - 1,378,828 (41,136)
query : 1 - 1,622 (1,622/1,622)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 11, nucl 7.5, plas 6, cyto_nucl 5.5,
mito_pero 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000362807_02 (
ENST00000381529
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,693 - 1,378,815 (41,123)
query : 1 - 1,816 (1,816/1,816)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 9, E.R. 6, mito 5.5, extr_plas 5.5,
mito_pero 5.5, pero 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000561981_02 (
NM_001161531
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform g precursor.)
genome : 1,337,693 - 1,374,711 (37,019)
query : 1 - 1,510 (1,510/1,510)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13, pero 4.5, plas 4, E.R. 4, mito_pero 4,
mito 2.5, cyto 2, lyso 2, E.R._golg 2, cysk_plas 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000362802_02 (
ENST00000381524
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,701 - 1,379,260 (41,560)
query : 1 - 2,277 (2,277/2,291)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 9, E.R. 6, mito 5.5, extr_plas 5.5,
mito_pero 5.5, pero 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000596755_02 (
ENST00000493312
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform h.)
genome : 1,337,707 - 1,369,436 (31,730)
query : 1 - 900 (900/900)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 10.1667, nucl 10, mito 8, extr 7, cyto 6,
cyto_pero 4.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000425883_02
(
AK293086
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,711 - 1,378,981 (41,271)
query : 1 - 1,964 (1,964/1,964)
13 exons
identity = 0.997
5'(1.000;1.000;0.990;1.000;1.000;1.000;1.000;
1.000;1.000;0.993;1.000;1.000;0.996)3'
coverage = 1.000
InterPro :
IPR003532 : Short hematopoietin receptor, family 2, conserved site
IPR003961 : Fibronectin type III
IPR015321 : Interleukin-6 receptor alpha, binding
GO :
0004896 : Molecular Function : cytokine receptor activity
0005515 : Molecular Function : protein binding
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 9, E.R. 6, mito 5.5, extr_plas 5.5,
mito_pero 5.5, pero 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000496019_02
(
AK301395
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform h.)
genome : 1,337,711 - 1,378,756 (41,046)
query : 1 - 1,532 (1,532/1,532)
11 exons
identity = 0.999
5'(0.984;1.000;1.000;1.000;0.994;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003532 : Short hematopoietin receptor, family 2, conserved site
IPR003961 : Fibronectin type III
IPR015321 : Interleukin-6 receptor alpha, binding
GO :
0004896 : Molecular Function : cytokine receptor activity
0005515 : Molecular Function : protein binding
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 11, nucl 7.5, plas 6, cyto_nucl 5.5,
mito_pero 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000510224_02 (
ENST00000412290
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,711 - 1,363,288 (25,578)
query : 1 - 802 (802/802)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000031053_02
(
BC002635
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,726 - 1,378,815 (41,090)
query : 10 - 1,816 (1,807/1,841)
13 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.998)3'
coverage = 0.999
InterPro :
IPR003532 : Short hematopoietin receptor, family 2, conserved site
IPR003961 : Fibronectin type III
IPR015321 : Interleukin-6 receptor alpha, binding
GO :
0004896 : Molecular Function : cytokine receptor activity
0005515 : Molecular Function : protein binding
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 9, E.R. 6, mito 5.5, extr_plas 5.5,
mito_pero 5.5, pero 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000264650_02
(
BC071835
)
Representative transcript
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,723 - 1,378,815 (41,093)
query : 1 - 1,938 (1,938/1,955)
14 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.994;1.000;1.000;1.000;0.990;0.988;0.996)3'
coverage = 1.000
InterPro :
IPR003532 : Short hematopoietin receptor, family 2, conserved site
IPR003961 : Fibronectin type III
IPR015321 : Interleukin-6 receptor alpha, binding
GO :
0004896 : Molecular Function : cytokine receptor activity
0005515 : Molecular Function : protein binding
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 9, E.R. 6, mito 5.5, extr_plas 5.5,
mito_pero 5.5, pero 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0260939
HIT000517028_02 (
ENST00000419094
)
(Interleukin-6 receptor alpha, binding domain containing protein.)
genome : 1,337,723 - 1,359,320 (21,598)
query : 1 - 856 (856/856)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, nucl 4, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260939)
HIX0159621
HIT000598351_02 (
ENST00000494969
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,725 - 1,378,815 (41,091)
query : 1 - 490 (490/490)
5 exons
identity = 0.978
5'(1.000;1.000;1.000;1.000;0.899)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 2, mito 2, cyto_mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000362787_02 (
ENST00000381509
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform g precursor.)
genome : 1,337,725 - 1,374,834 (37,110)
query : 1 - 1,601 (1,601/1,601)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13, pero 4.5, plas 4, E.R. 4, mito_pero 4,
mito 2.5, cyto 2, lyso 2, E.R._golg 2, cysk_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000196130_02
(
M64445
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform g precursor.)
genome : 1,337,725 - 1,374,711 (36,987)
query : 1 - 1,478 (1,478/1,480)
13 exons
identity = 0.999
5'(0.979;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR003532 : Short hematopoietin receptor, family 2, conserved site
IPR003961 : Fibronectin type III
IPR015321 : Interleukin-6 receptor alpha, binding
GO :
0004896 : Molecular Function : cytokine receptor activity
0005515 : Molecular Function : protein binding
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13, pero 4.5, plas 4, E.R. 4, mito_pero 4,
mito 2.5, cyto 2, lyso 2, E.R._golg 2, cysk_plas 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0260939
HIT000585223_02 (
ENST00000481245
)
(Hypothetical protein.)
genome : 1,337,728 - 1,351,113 (13,386)
query : 1 - 459 (459/459)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 13, extr 6, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260939)
HIX0159621
HIT000028509_02
(
AL833597
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,733 - 1,378,828 (41,096)
query : 2 - 1,790 (1,789/1,839)
13 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.998)3'
coverage = 0.997
InterPro :
IPR003532 : Short hematopoietin receptor, family 2, conserved site
IPR003961 : Fibronectin type III
IPR015321 : Interleukin-6 receptor alpha, binding
GO :
0004896 : Molecular Function : cytokine receptor activity
0005515 : Molecular Function : protein binding
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 9, E.R. 6, mito 5.5, extr_plas 5.5,
mito_pero 5.5, pero 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000428496_04
(
AK309630
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,735 - 1,363,286 (25,552)
query : 4 - 1,630 (1,627/1,630)
9 exons
identity = 0.993
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.987;
0.998;0.957)3'
coverage = 0.998
InterPro :
IPR003532 : Short hematopoietin receptor, family 2, conserved site
IPR003961 : Fibronectin type III
IPR015321 : Interleukin-6 receptor alpha, binding
GO :
0004896 : Molecular Function : cytokine receptor activity
0005515 : Molecular Function : protein binding
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, nucl 4, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000192815_02
(
L29348
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,738 - 1,378,827 (41,090)
query : 1 - 1,671 (1,671/1,671)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003532 : Short hematopoietin receptor, family 2, conserved site
IPR003961 : Fibronectin type III
IPR015321 : Interleukin-6 receptor alpha, binding
GO :
0004896 : Molecular Function : cytokine receptor activity
0005515 : Molecular Function : protein binding
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto 3, nucl 2, mito 2, mito_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000192816_02
(
L29349
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,738 - 1,378,827 (41,090)
query : 1 - 1,628 (1,628/1,628)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003532 : Short hematopoietin receptor, family 2, conserved site
IPR003961 : Fibronectin type III
IPR015321 : Interleukin-6 receptor alpha, binding
GO :
0004896 : Molecular Function : cytokine receptor activity
0005515 : Molecular Function : protein binding
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 5, cyto 4, mito_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000222660_04
(
U93096
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,738 - 1,378,827 (41,090)
query : 1 - 1,410 (1,410/1,410)
9 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.998)3'
coverage = 1.000
InterPro :
IPR003532 : Short hematopoietin receptor, family 2, conserved site
IPR003961 : Fibronectin type III
IPR015321 : Interleukin-6 receptor alpha, binding
GO :
0004896 : Molecular Function : cytokine receptor activity
0005515 : Molecular Function : protein binding
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000309573_02 (
ENST00000355432
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,738 - 1,378,827 (41,090)
query : 1 - 1,628 (1,628/1,628)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 5, cyto 4, mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000309894_04 (
ENST00000355805
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,738 - 1,378,827 (41,090)
query : 1 - 1,410 (1,410/1,410)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000321625_02
(
X17648
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,738 - 1,378,827 (41,090)
query : 1 - 1,807 (1,807/1,807)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003532 : Short hematopoietin receptor, family 2, conserved site
IPR003961 : Fibronectin type III
IPR015321 : Interleukin-6 receptor alpha, binding
GO :
0004896 : Molecular Function : cytokine receptor activity
0005515 : Molecular Function : protein binding
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 9, E.R. 6, mito 5.5, extr_plas 5.5,
mito_pero 5.5, pero 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000590527_02 (
ENST00000486791
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,337,738 - 1,378,827 (41,090)
query : 1 - 1,671 (1,671/1,671)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto 3, nucl 2, mito 2, mito_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000317891_02 (
NM_172247
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,351,571 - 1,378,828 (27,258)
query : 1 - 1,588 (1,588/1,590)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, nucl 3, cyto 3, cyto_nucl 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000561980_02 (
NM_001161530
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform c precursor.)
genome : 1,351,571 - 1,378,828 (27,258)
query : 1 - 1,787 (1,787/1,789)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 9, E.R. 6, extr_plas 6, mito 5.5, mito_pero 5.5,
pero 4.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000515469_02 (
ENST00000417535
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform c precursor.)
genome : 1,351,571 - 1,378,828 (27,258)
query : 1 - 1,787 (1,787/1,787)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 9, E.R. 6, extr_plas 6, mito 5.5, mito_pero 5.5,
pero 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000196286_02
(
M73832
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,351,579 - 1,378,531 (26,953)
query : 1 - 1,283 (1,283/1,283)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003532 : Short hematopoietin receptor, family 2, conserved site
IPR003961 : Fibronectin type III
IPR015321 : Interleukin-6 receptor alpha, binding
GO :
0004896 : Molecular Function : cytokine receptor activity
0005515 : Molecular Function : protein binding
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, nucl 3, cyto 3, cyto_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000362778_02 (
ENST00000381500
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,351,579 - 1,378,531 (26,953)
query : 1 - 1,283 (1,283/1,283)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, nucl 3, cyto 3, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000468608_02
(
DQ841258
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform c precursor.)
genome : 1,351,597 - 1,378,372 (26,776)
query : 1 - 1,305 (1,305/1,305)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003532 : Short hematopoietin receptor, family 2, conserved site
IPR003961 : Fibronectin type III
IPR015321 : Interleukin-6 receptor alpha, binding
GO :
0004896 : Molecular Function : cytokine receptor activity
0005515 : Molecular Function : protein binding
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 9, E.R. 6, extr_plas 6, mito 5.5, mito_pero 5.5,
pero 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000321946_02
(
X54935
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,351,597 - 1,374,394 (22,798)
query : 1 - 1,002 (1,002/1,002)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003532 : Short hematopoietin receptor, family 2, conserved site
IPR003961 : Fibronectin type III
IPR015321 : Interleukin-6 receptor alpha, binding
GO :
0004896 : Molecular Function : cytokine receptor activity
0005515 : Molecular Function : protein binding
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, nucl 3, cyto 3, cyto_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000582064_02 (
ENST00000477940
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,354,545 - 1,357,533 (2,989)
query : 1 - 391 (391/391)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, mito 6, cyto 5.5, nucl 4, cyto_pero 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000582370_02 (
ENST00000478256
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,357,491 - 1,357,998 (508)
query : 1 - 392 (392/392)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 6.5, cyto_nucl 5.83333,
mito_nucl 5.83333, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000579510_02 (
ENST00000475259
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,359,346 - 1,378,815 (19,470)
query : 1 - 476 (476/476)
6 exons
identity = 0.994
5'(1.000;1.000;1.000;1.000;0.923;0.989)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, nucl 13, cyto 13, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0260997
HIT000693045_02 (
ENST00000581137
)
(Non-protein coding transcript.)
genome : 1,360,648 - 1,360,721 (74)
query : 1 - 74 (74/74)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260997)
HIX0260996
HIT000692598_02 (
ENST00000580687
)
(Non-protein coding transcript.)
genome : 1,360,987 - 1,361,060 (74)
query : 1 - 74 (74/74)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260996)
HIX0260993
HIT000690637_02 (
ENST00000578699
)
(Non-protein coding transcript.)
genome : 1,362,508 - 1,362,582 (75)
query : 1 - 75 (75/75)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260993)
HIX0159621
HIT000659820_02 (
NR_037461
)
(Non-protein coding transcript.)
genome : 1,362,811 - 1,362,885 (75)
query : 1 - 75 (75/75)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000692184_02 (
ENST00000580266
)
(Non-protein coding transcript.)
genome : 1,362,811 - 1,362,885 (75)
query : 1 - 75 (75/75)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000694928_02 (
ENST00000583047
)
(Non-protein coding transcript.)
genome : 1,363,025 - 1,363,099 (75)
query : 1 - 75 (75/75)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000595200_02 (
ENST00000491683
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha; GM-CSF-R-alpha; GMCSFR-alpha; GMR-alpha; CDw116; AltName: CD_antigen=CD116; Precursor;)
genome : 1,363,118 - 1,364,471 (1,354)
query : 1 - 389 (389/389)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 10, cyto 9.5, extr 8, cyto_nucl 7, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0159621
HIT000601388_02 (
ENST00000498153
)
(Granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform c precursor.)
genome : 1,363,221 - 1,378,827 (15,607)
query : 1 - 1,114 (1,114/1,114)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 15, nucl 7, pero 4, plas 3, cyto_pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159621)
HIX0177796
HIT000088331_04
(
BC014231
)
Representative transcript
(Hypothetical protein.)
genome : 1,381,066 - 1,382,162 (1,097)
query : 1 - 1,097 (1,097/1,120)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, nucl 13, cyto 10, extr 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177796)
HIX0260991
HIT000689846_02 (
ENST00000577896
)
(Hypothetical protein.)
genome : 1,387,739 - 1,388,052 (314)
query : 1 - 314 (314/314)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260991)
HIX0177608
HIT000051392_04
(
BC035407
)
Representative transcript
(Interleukin-3 receptor subunit alpha; IL-3 receptor subunit alpha; IL-3R subunit alpha; IL-3R-alpha; IL-3RA; AltName: CD_antigen=CD123; Precursor;)
genome : 1,405,509 - 1,451,577 (46,069)
query : 1 - 1,705 (1,705/1,760)
12 exons
identity = 0.999
5'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003532 : Short hematopoietin receptor, family 2, conserved site
IPR003961 : Fibronectin type III
IPR015321 : Interleukin-6 receptor alpha, binding
GO :
0004896 : Molecular Function : cytokine receptor activity
0005515 : Molecular Function : protein binding
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 17.5, extr_plas 11.5, E.R. 6, extr 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177608)
HIX0177608
HIT000199100_04 (
NM_002183
)
(Interleukin-3 receptor subunit alpha; IL-3 receptor subunit alpha; IL-3R subunit alpha; IL-3R-alpha; IL-3RA; AltName: CD_antigen=CD123; Precursor;)
genome : 1,405,509 - 1,451,582 (46,074)
query : 1 - 1,710 (1,710/1,713)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.998
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 17.5, extr_plas 11.5, E.R. 6, extr 4.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177608)
HIX0177608
HIT000724578_02 (
NM_001267713
)
(Interleukin-3 receptor subunit alpha isoform 2 precursor.)
genome : 1,405,509 - 1,451,582 (46,074)
query : 1 - 1,476 (1,476/1,479)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 0.998
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 18, extr 9, cysk_plas 9, cyto_plas 9
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177608)
HIX0177608
HIT000127004_04 (
ENST00000331035
)
(Interleukin-3 receptor subunit alpha; IL-3 receptor subunit alpha; IL-3R subunit alpha; IL-3R-alpha; IL-3RA; AltName: CD_antigen=CD123; Precursor;)
genome : 1,405,509 - 1,451,578 (46,070)
query : 1 - 1,706 (1,706/1,706)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 17.5, extr_plas 11.5, E.R. 6, extr 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177608)
HIX0177608
HIT000423365_04
(
AK290568
)
(Interleukin-3 receptor subunit alpha; IL-3 receptor subunit alpha; IL-3R subunit alpha; IL-3R-alpha; IL-3RA; AltName: CD_antigen=CD123; Precursor;)
genome : 1,405,679 - 1,451,576 (45,898)
query : 1 - 1,534 (1,534/1,536)
12 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.993)3'
coverage = 0.999
InterPro :
IPR003532 : Short hematopoietin receptor, family 2, conserved site
IPR003961 : Fibronectin type III
IPR015321 : Interleukin-6 receptor alpha, binding
GO :
0004896 : Molecular Function : cytokine receptor activity
0005515 : Molecular Function : protein binding
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 17.5, extr_plas 11.5, E.R. 6, extr 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177608)
HIX0177608
HIT000530691_02 (
ENST00000432757
)
(Interleukin-3 receptor subunit alpha isoform 2 precursor.)
genome : 1,405,689 - 1,425,224 (19,536)
query : 1 - 662 (662/662)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177608)
HIX0177608
HIT000196340_04
(
M74782
)
(Interleukin-3 receptor subunit alpha; IL-3 receptor subunit alpha; IL-3R subunit alpha; IL-3R-alpha; IL-3RA; AltName: CD_antigen=CD123; Precursor;)
genome : 1,405,712 - 1,451,535 (45,824)
query : 1 - 1,460 (1,460/1,460)
12 exons
identity = 0.999
5'(0.991;1.000;0.992;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003532 : Short hematopoietin receptor, family 2, conserved site
IPR003961 : Fibronectin type III
IPR015321 : Interleukin-6 receptor alpha, binding
GO :
0004896 : Molecular Function : cytokine receptor activity
0005515 : Molecular Function : protein binding
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 17.5, extr_plas 11.5, E.R. 6, extr 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177608)
HIX0177608
HIT000362747_04 (
ENST00000381469
)
(Interleukin-3 receptor subunit alpha isoform 2 precursor.)
genome : 1,410,659 - 1,451,358 (40,700)
query : 1 - 903 (903/903)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 18, extr 9, cysk_plas 9, cyto_plas 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177608)
HIX0177608
HIT000558724_02
(
FJ550347
)
(Interleukin-3 receptor subunit alpha isoform 2 precursor.)
genome : 1,410,659 - 1,451,358 (40,700)
query : 1 - 903 (903/903)
9 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.991;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003532 : Short hematopoietin receptor, family 2, conserved site
IPR003961 : Fibronectin type III
IPR015321 : Interleukin-6 receptor alpha, binding
GO :
0004896 : Molecular Function : cytokine receptor activity
0005515 : Molecular Function : protein binding
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 18, extr 9, cysk_plas 9, cyto_plas 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177608)
HIX0177604
HIT000033933_04
(
BC008737
)
Representative transcript
(Adenine nucleotide translocator 1 family protein.)
genome : 1,455,049 - 1,460,981 (5,933)
query : 1 - 1,422 (1,422/1,457)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002067 : Mitochondrial carrier protein
IPR002113 : Adenine nucleotide translocator 1
IPR018108 : Mitochondrial substrate/solute carrier
IPR023395 : Mitochondrial carrier domain
GO :
0005215 : Molecular Function : transporter activity
0005743 : Cellular Component : mitochondrial inner membrane
0006810 : Biological Process : transport
0055085 : Biological Process : transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, mito 13, extr 2, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177604)
HIX0177604
HIT000198576_04 (
NM_001636
)
(Adenine nucleotide translocator 1 family protein.)
genome : 1,455,045 - 1,461,039 (5,995)
query : 1 - 1,484 (1,484/1,502)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, mito 13, extr 2, nucl 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177604)
HIX0177604
HIT000036852_04
(
BC014775
)
(Adenine nucleotide translocator 1 family protein.)
genome : 1,455,045 - 1,460,994 (5,950)
query : 1 - 1,437 (1,437/1,455)
4 exons
identity = 0.997
3'(0.997;0.993;0.998;1.000)5'
coverage = 0.999
InterPro :
IPR002067 : Mitochondrial carrier protein
IPR002113 : Adenine nucleotide translocator 1
IPR018108 : Mitochondrial substrate/solute carrier
IPR023395 : Mitochondrial carrier domain
GO :
0005215 : Molecular Function : transporter activity
0005743 : Cellular Component : mitochondrial inner membrane
0006810 : Biological Process : transport
0055085 : Biological Process : transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, mito 12, extr 2, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177604)
HIX0177604
HIT000041389_04
(
BC031912
)
(Adenine nucleotide translocator 1 family protein.)
genome : 1,455,045 - 1,460,939 (5,895)
query : 1 - 1,384 (1,384/1,399)
4 exons
identity = 0.999
3'(1.000;1.000;0.998;1.000)5'
coverage = 0.999
InterPro :
IPR002067 : Mitochondrial carrier protein
IPR002113 : Adenine nucleotide translocator 1
IPR018108 : Mitochondrial substrate/solute carrier
IPR023395 : Mitochondrial carrier domain
GO :
0005215 : Molecular Function : transporter activity
0005743 : Cellular Component : mitochondrial inner membrane
0006810 : Biological Process : transport
0055085 : Biological Process : transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, mito 13, extr 2, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177604)
HIX0177604
HIT000362679_04 (
ENST00000381401
)
(Adenine nucleotide translocator 1 family protein.)
genome : 1,455,045 - 1,461,617 (6,573)
query : 1 - 2,062 (2,062/2,062)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, mito 13, extr 2, nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177604)
HIX0177604
HIT000033489_04
(
BC007850
)
(Adenine nucleotide translocator 1 family protein.)
genome : 1,455,143 - 1,460,993 (5,851)
query : 1 - 1,340 (1,340/1,357)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002067 : Mitochondrial carrier protein
IPR002113 : Adenine nucleotide translocator 1
IPR018108 : Mitochondrial substrate/solute carrier
IPR023395 : Mitochondrial carrier domain
GO :
0005215 : Molecular Function : transporter activity
0005743 : Cellular Component : mitochondrial inner membrane
0006810 : Biological Process : transport
0055085 : Biological Process : transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, mito 13, extr 2, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177604)
HIX0177604
HIT000088073_04
(
BC013256
)
(Adenine nucleotide translocator 1 family protein.)
genome : 1,455,143 - 1,460,993 (5,851)
query : 1 - 1,340 (1,340/1,355)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002067 : Mitochondrial carrier protein
IPR002113 : Adenine nucleotide translocator 1
IPR018108 : Mitochondrial substrate/solute carrier
IPR023395 : Mitochondrial carrier domain
GO :
0005215 : Molecular Function : transporter activity
0005743 : Cellular Component : mitochondrial inner membrane
0006810 : Biological Process : transport
0055085 : Biological Process : transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, mito 13, extr 2, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177604)
HIX0177604
HIT000093924_04
(
BC035469
)
(Adenine nucleotide translocator 1 family protein.)
genome : 1,455,143 - 1,460,993 (5,851)
query : 1 - 1,340 (1,340/1,355)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002067 : Mitochondrial carrier protein
IPR002113 : Adenine nucleotide translocator 1
IPR018108 : Mitochondrial substrate/solute carrier
IPR023395 : Mitochondrial carrier domain
GO :
0005215 : Molecular Function : transporter activity
0005743 : Cellular Component : mitochondrial inner membrane
0006810 : Biological Process : transport
0055085 : Biological Process : transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, mito 13, extr 2, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177604)
HIX0177604
HIT000033126_04
(
BC007295
)
(Adenine nucleotide translocator 1 family protein.)
genome : 1,455,154 - 1,460,954 (5,801)
query : 1 - 1,290 (1,290/1,308)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR002067 : Mitochondrial carrier protein
IPR002113 : Adenine nucleotide translocator 1
IPR018108 : Mitochondrial substrate/solute carrier
IPR023395 : Mitochondrial carrier domain
GO :
0005215 : Molecular Function : transporter activity
0005743 : Cellular Component : mitochondrial inner membrane
0006810 : Biological Process : transport
0055085 : Biological Process : transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, mito 13, extr 2, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177604)
HIX0177604
HIT000083073_04
(
AY007135
)
(Adenine nucleotide translocator 1 family protein.)
genome : 1,455,143 - 1,460,991 (5,849)
query : 1 - 1,338 (1,338/1,344)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 0.996
InterPro :
IPR002067 : Mitochondrial carrier protein
IPR002113 : Adenine nucleotide translocator 1
IPR018108 : Mitochondrial substrate/solute carrier
IPR023395 : Mitochondrial carrier domain
GO :
0005215 : Molecular Function : transporter activity
0005743 : Cellular Component : mitochondrial inner membrane
0006810 : Biological Process : transport
0055085 : Biological Process : transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, mito 13, extr 2, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177604)
HIX0177604
HIT000329757_04
(
AB209822
)
(Adenine nucleotide translocator 1 family protein.)
genome : 1,455,139 - 1,460,994 (5,856)
query : 1 - 1,345 (1,345/1,345)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002067 : Mitochondrial carrier protein
IPR002113 : Adenine nucleotide translocator 1
IPR018108 : Mitochondrial substrate/solute carrier
IPR023395 : Mitochondrial carrier domain
GO :
0005215 : Molecular Function : transporter activity
0005743 : Cellular Component : mitochondrial inner membrane
0006810 : Biological Process : transport
0055085 : Biological Process : transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, mito 13, extr 2, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177604)
HIX0260961
HIT000191183_04
(
J03592
)
Representative transcript
(Adenine nucleotide translocator 1 family protein.)
genome : 1,455,168 - 1,458,623 (3,456)
query : 1 - 1,113 (1,113/1,116)
3 exons
identity = 0.996
5'(1.000;1.000;0.992)3'
coverage = 0.997
InterPro :
IPR002067 : Mitochondrial carrier protein
IPR002113 : Adenine nucleotide translocator 1
IPR018108 : Mitochondrial substrate/solute carrier
IPR023395 : Mitochondrial carrier domain
GO :
0005215 : Molecular Function : transporter activity
0005743 : Cellular Component : mitochondrial inner membrane
0006810 : Biological Process : transport
0055085 : Biological Process : transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 26.5, cyto_nucl 15, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260961)
HIX0177604
HIT000034089_04
(
BC008935
)
(Adenine nucleotide translocator 1 family protein.)
genome : 1,455,321 - 1,460,986 (5,666)
query : 1 - 1,155 (1,155/1,184)
4 exons
identity = 0.999
3'(0.997;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002067 : Mitochondrial carrier protein
IPR002113 : Adenine nucleotide translocator 1
IPR018108 : Mitochondrial substrate/solute carrier
IPR023395 : Mitochondrial carrier domain
GO :
0005215 : Molecular Function : transporter activity
0005743 : Cellular Component : mitochondrial inner membrane
0006810 : Biological Process : transport
0055085 : Biological Process : transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, mito 13, extr 2, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177604)
HIX0177604
HIT000431202_04
(
AK312336
)
(Adenine nucleotide translocator 1 family protein.)
genome : 1,455,495 - 1,461,006 (5,512)
query : 1 - 1,001 (1,001/1,001)
4 exons
identity = 0.999
3'(1.000;1.000;0.998;1.000)5'
coverage = 1.000
InterPro :
IPR002067 : Mitochondrial carrier protein
IPR002113 : Adenine nucleotide translocator 1
IPR018108 : Mitochondrial substrate/solute carrier
IPR023395 : Mitochondrial carrier domain
GO :
0005215 : Molecular Function : transporter activity
0005743 : Cellular Component : mitochondrial inner membrane
0006810 : Biological Process : transport
0055085 : Biological Process : transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, mito 13, extr 2, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177604)
HIX0177604
HIT000268250_04
(
CR457400
)
(Adenine nucleotide translocator 1 family protein.)
genome : 1,455,495 - 1,460,902 (5,408)
query : 1 - 897 (897/897)
4 exons
identity = 0.999
3'(0.994;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002067 : Mitochondrial carrier protein
IPR002113 : Adenine nucleotide translocator 1
IPR018108 : Mitochondrial substrate/solute carrier
IPR023395 : Mitochondrial carrier domain
GO :
0005215 : Molecular Function : transporter activity
0005743 : Cellular Component : mitochondrial inner membrane
0006810 : Biological Process : transport
0055085 : Biological Process : transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, mito 13, extr 2, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177604)
HIX0177604
HIT000579423_02 (
ENST00000475167
)
(Adenine nucleotide translocator 1 family protein.)
genome : 1,456,204 - 1,460,996 (4,793)
query : 1 - 900 (900/900)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 15, nucl 6, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177604)
HIX0177604
HIT000587892_02 (
ENST00000484026
)
(Adenine nucleotide translocator 1 family protein.)
genome : 1,456,238 - 1,460,981 (4,744)
query : 1 - 854 (854/854)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 14.5, nucl 5, mito 4, extr 3,
mito_pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177604)
HIX0177751
HIT000532872_02 (
ENST00000434938
)
(Non-protein coding transcript.)
genome : 1,465,320 - 1,467,851 (2,532)
query : 1 - 356 (356/356)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177751)
HIX0177751
HIT000528169_02 (
ENST00000430235
)
(Non-protein coding transcript.)
genome : 1,465,918 - 1,468,295 (2,378)
query : 1 - 370 (370/370)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177751)
HIX0177590
HIT000562908_02 (
NR_026711
)
(Hypothetical protein.)
genome : 1,469,424 - 1,484,314 (14,891)
query : 1 - 2,319 (2,319/2,319)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 18, cyto 8
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177590)
HIX0159613
HIT000562907_02 (
NR_026710
)
(Hypothetical protein.)
genome : 1,469,424 - 1,482,479 (13,056)
query : 1 - 1,789 (1,789/1,789)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159613)
HIX0177590
HIT000541863_02 (
ENST00000443929
)
(N-acetylserotonin O-methyltransferase-like protein; ASMTL;)
genome : 1,470,662 - 1,472,386 (1,725)
query : 1 - 574 (574/574)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177590)
HIX0177590
HIT000523674_02 (
ENST00000425740
)
(N-acetylserotonin O-methyltransferase-like protein; ASMTL;)
genome : 1,470,704 - 1,482,808 (12,105)
query : 1 - 840 (840/840)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177590)
HIX0177590
HIT000006666_04
(
AK023392
)
Representative transcript
(Hypothetical protein.)
genome : 1,470,814 - 1,484,319 (13,506)
query : 1 - 1,780 (1,780/1,782)
6 exons
identity = 0.969
5'(1.000;0.964;1.000;0.993;1.000;0.935)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, nucl 15, cyto 11, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177590)
HIX0177590
HIT000073303_04
(
AF193043
)
(Hypothetical protein.)
genome : 1,470,936 - 1,484,314 (13,379)
query : 1 - 930 (930/948)
4 exons
identity = 0.961
5'(0.989;0.992;0.964;0.919)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 16, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177590)
HIX0177590
HIT000518345_02 (
ENST00000420411
)
(Hypothetical protein.)
genome : 1,470,936 - 1,482,024 (11,089)
query : 1 - 697 (697/697)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 16.5, cyto 7, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177590)
HIX0177590
HIT000334969_04
(
BC093994
)
(Hypothetical protein.)
genome : 1,470,956 - 1,481,979 (11,024)
query : 1 - 630 (630/630)
3 exons
identity = 0.994
5'(0.994;1.000;0.991)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 16.5, cyto 10, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177590)
HIX0177590
HIT000501978_02
(
BC143527
)
(N-acetylserotonin O-methyltransferase-like protein; ASMTL;)
genome : 1,470,956 - 1,481,979 (11,024)
query : 1 - 664 (664/664)
3 exons
identity = 0.994
5'(0.994;1.000;0.992)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 4, cyto 4, cyto_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177590)
HIX0159613
HIT000384900_02
(
AK225770
)
Representative transcript
(N-acetylserotonin O-methyltransferase-like protein; ASMTL;)
genome : 1,472,034 - 1,521,792 (49,759)
query : 1 - 2,053 (2,053/2,101)
13 exons
identity = 0.999
3'(1.000;1.000;0.993;1.000;1.000;1.000;0.995;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001077 : O-methyltransferase, family 2
IPR003697 : Maf-like protein
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR029001 : Inosine triphosphate pyrophosphatase-like
IPR029063 : S-adenosyl-L-methionine-dependent methyltransferase
GO :
0005737 : Cellular Component : cytoplasm
0008171 : Molecular Function : O-methyltransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 26, nucl 2, cyto 2, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159613)
HIX0159613
HIT000034791_02
(
BC010089
)
(N-acetylserotonin O-methyltransferase-like protein; ASMTL;)
genome : 1,472,032 - 1,521,754 (49,723)
query : 1 - 2,017 (2,017/2,052)
13 exons
identity = 0.998
3'(1.000;1.000;0.993;0.992;1.000;1.000;0.995;
1.000;1.000;0.985;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001077 : O-methyltransferase, family 2
IPR003697 : Maf-like protein
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR029001 : Inosine triphosphate pyrophosphatase-like
IPR029063 : S-adenosyl-L-methionine-dependent methyltransferase
GO :
0005737 : Cellular Component : cytoplasm
0008171 : Molecular Function : O-methyltransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 26, nucl 2, cyto 2, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159613)
HIX0159613
HIT000030950_02
(
BC002508
)
(N-acetylserotonin O-methyltransferase-like protein; ASMTL;)
genome : 1,472,034 - 1,521,756 (49,723)
query : 1 - 2,017 (2,017/2,037)
13 exons
identity = 0.997
3'(1.000;0.992;0.993;1.000;1.000;1.000;0.992;
1.000;1.000;0.985;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001077 : O-methyltransferase, family 2
IPR003697 : Maf-like protein
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR029001 : Inosine triphosphate pyrophosphatase-like
IPR029063 : S-adenosyl-L-methionine-dependent methyltransferase
GO :
0005737 : Cellular Component : cytoplasm
0008171 : Molecular Function : O-methyltransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 26, nucl 2, cyto 2, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159613)
HIX0159613
HIT000655048_02 (
NM_001173473
)
(N-acetylserotonin O-methyltransferase-like protein; ASMTL;)
genome : 1,472,032 - 1,522,655 (50,624)
query : 1 - 2,048 (2,048/2,064)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, nucl 5, pero 4, mito 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159613)
HIX0159613
HIT000200958_02 (
NM_004192
)
(N-acetylserotonin O-methyltransferase-like protein; ASMTL;)
genome : 1,472,032 - 1,521,870 (49,839)
query : 1 - 2,133 (2,133/2,149)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 26, nucl 2, cyto 2, cyto_nucl 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159613)
HIX0159613
HIT000655049_02 (
NM_001173474
)
(N-acetylserotonin O-methyltransferase-like protein isoform 3.)
genome : 1,472,032 - 1,521,870 (49,839)
query : 1 - 2,085 (2,085/2,101)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 26, nucl 2, cyto 2, cyto_nucl 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159613)
HIX0159613
HIT000633985_02 (
ENST00000534940
)
(N-acetylserotonin O-methyltransferase-like protein; ASMTL;)
genome : 1,472,032 - 1,522,655 (50,624)
query : 1 - 2,048 (2,048/2,048)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, nucl 5, pero 4, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159613)
HIX0159613
HIT000492429_02
(
AK297805
)
(N-acetylserotonin O-methyltransferase-like protein; ASMTL;)
genome : 1,472,032 - 1,521,768 (49,737)
query : 1 - 1,966 (1,966/1,966)
12 exons
identity = 0.997
3'(1.000;0.992;0.993;1.000;1.000;1.000;0.992;
1.000;1.000;1.000;0.992;1.000)5'
coverage = 1.000
InterPro :
IPR001077 : O-methyltransferase, family 2
IPR003697 : Maf-like protein
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR029001 : Inosine triphosphate pyrophosphatase-like
IPR029063 : S-adenosyl-L-methionine-dependent methyltransferase
GO :
0005737 : Cellular Component : cytoplasm
0008171 : Molecular Function : O-methyltransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15.5, cyto_mito 11.1667, nucl 10,
cyto_nucl 8.83333, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159613)
HIX0159613
HIT000514667_02 (
ENST00000416733
)
(N-acetylserotonin O-methyltransferase-like protein; ASMTL;)
genome : 1,472,032 - 1,521,768 (49,737)
query : 1 - 1,966 (1,966/1,966)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14.5, nucl 10.5, cyto_mito 10.5,
cyto_nucl 9.33333, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159613)
HIX0159613
HIT000496468_02
(
AK301844
)
(N-acetylserotonin O-methyltransferase-like protein; ASMTL;)
genome : 1,472,034 - 1,522,649 (50,616)
query : 1 - 2,040 (2,040/2,040)
13 exons
identity = 0.998
3'(1.000;1.000;1.000;0.992;0.995;1.000;0.995;
1.000;1.000;1.000;1.000;1.000;0.993)5'
coverage = 1.000
InterPro :
IPR001077 : O-methyltransferase, family 2
IPR003697 : Maf-like protein
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR029001 : Inosine triphosphate pyrophosphatase-like
IPR029063 : S-adenosyl-L-methionine-dependent methyltransferase
GO :
0005737 : Cellular Component : cytoplasm
0008171 : Molecular Function : O-methyltransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, nucl 5, pero 4, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159613)
HIX0159613
HIT000015365_02
(
AK090498
)
(N-acetylserotonin O-methyltransferase-like protein isoform 3.)
genome : 1,472,034 - 1,521,822 (49,789)
query : 1 - 2,035 (2,035/2,035)
12 exons
identity = 0.999
3'(1.000;1.000;0.993;1.000;1.000;1.000;0.995;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001077 : O-methyltransferase, family 2
IPR003697 : Maf-like protein
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR029001 : Inosine triphosphate pyrophosphatase-like
IPR029063 : S-adenosyl-L-methionine-dependent methyltransferase
GO :
0005737 : Cellular Component : cytoplasm
0008171 : Molecular Function : O-methyltransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 26, nucl 2, cyto 2, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159613)
HIX0159613
HIT000362611_02 (
ENST00000381333
)
(N-acetylserotonin O-methyltransferase-like protein isoform 3.)
genome : 1,472,034 - 1,521,822 (49,789)
query : 1 - 2,035 (2,035/2,035)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 26, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159613)
HIX0159613
HIT000493855_02
(
AK299231
)
(N-acetylserotonin O-methyltransferase-like protein; ASMTL;)
genome : 1,472,034 - 1,521,817 (49,784)
query : 1 - 2,049 (2,049/2,049)
13 exons
identity = 0.993
3'(1.000;0.992;0.993;1.000;1.000;1.000;0.995;
1.000;1.000;1.000;1.000;1.000;0.935)5'
coverage = 1.000
InterPro :
IPR001077 : O-methyltransferase, family 2
IPR003697 : Maf-like protein
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR029001 : Inosine triphosphate pyrophosphatase-like
IPR029063 : S-adenosyl-L-methionine-dependent methyltransferase
GO :
0005737 : Cellular Component : cytoplasm
0008171 : Molecular Function : O-methyltransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto 5, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159613)
HIX0159613
HIT000003564_02
(
AK001090
)
(N-acetylserotonin O-methyltransferase-like protein; ASMTL;)
genome : 1,472,034 - 1,521,766 (49,733)
query : 1 - 2,027 (2,027/2,027)
13 exons
identity = 0.997
3'(1.000;1.000;0.986;0.992;1.000;1.000;0.995;
0.991;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 26, nucl 2, cyto 2, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159613)
HIX0159613
HIT000362595_02 (
ENST00000381317
)
(N-acetylserotonin O-methyltransferase-like protein; ASMTL;)
genome : 1,472,034 - 1,521,766 (49,733)
query : 1 - 2,027 (2,027/2,027)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 26, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159613)
HIX0177590
HIT000517671_02 (
ENST00000419737
)
(N-acetylserotonin O-methyltransferase-like protein; ASMTL;)
genome : 1,472,352 - 1,482,921 (10,570)
query : 1 - 553 (553/553)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 11, nucl 8, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177590)
HIX0177590
HIT000714090_02 (
ENST00000602357
)
(Acetylserotonin O-methyltransferase isoform 2.)
genome : 1,472,403 - 1,482,917 (10,515)
query : 1 - 435 (435/435)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.1.1.4
KEGG pathway :
00380 : Tryptophan metabolism (54)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 12, extr 9, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177590)
HIX0159613
HIT000568542_02 (
ENST00000463763
)
(N-acetylserotonin O-methyltransferase-like protein; ASMTL;)
genome : 1,496,620 - 1,504,284 (7,665)
query : 1 - 874 (874/874)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto 6.5, cyto_nucl 5.5, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159613)
HIX0159613
HIT000567041_02 (
ENST00000462195
)
(Hypothetical protein.)
genome : 1,500,795 - 1,504,621 (3,827)
query : 1 - 573 (573/573)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 10, cyto_nucl 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159613)
HIX0159613
HIT000579140_02 (
ENST00000474865
)
(N-acetylserotonin O-methyltransferase-like protein isoform 3.)
genome : 1,510,485 - 1,521,765 (11,281)
query : 1 - 851 (851/851)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto 5.5, extr 5, cyto_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159613)
HIX0177597
HIT000052838_04
(
BC043610
)
Representative transcript
(P2Y purinoceptor 8; P2Y8;)
genome : 1,531,469 - 1,606,000 (74,532)
query : 1 - 4,191 (4,191/4,206)
2 exons
identity = 0.999
3'(0.999)5'
coverage = 1.000
InterPro :
IPR027669 : P2Y purinoceptor 8
GO :
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
0045028 : Molecular Function : G-protein coupled purinergic nucleotide receptor activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177597)
HIX0177597
HIT000028096_04
(
AL833184
)
(Hypothetical protein.)
genome : 1,531,487 - 1,534,037 (2,551)
query : 1 - 2,549 (2,549/2,580)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, extr 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177597)
HIX0177597
HIT000317998_04 (
NM_178129
)
(P2Y purinoceptor 8; P2Y8;)
genome : 1,531,465 - 1,606,037 (74,573)
query : 1 - 4,235 (4,235/4,240)
2 exons
identity = 1.000
3'(1.000)5'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177597)
HIX0177597
HIT000087944_04
(
BC012792
)
(Hypothetical protein.)
genome : 1,531,487 - 1,533,498 (2,012)
query : 1 - 2,010 (2,010/2,034)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, extr 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177597)
HIX0177597
HIT000362575_04 (
ENST00000381297
)
(P2Y purinoceptor 8; P2Y8;)
genome : 1,531,465 - 1,606,000 (74,536)
query : 1 - 4,198 (4,198/4,198)
2 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177597)
HIX0177597
HIT000017823_04
(
AK092956
)
(Hypothetical protein.)
genome : 1,531,468 - 1,533,561 (2,094)
query : 1 - 2,092 (2,092/2,092)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, extr 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177597)
HIX0177597
HIT000565589_02 (
ENST00000460672
)
(Non-protein coding transcript.)
genome : 1,535,330 - 1,563,246 (27,917)
query : 1 - 407 (407/407)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177597)
HIX0213648
eHIT000025539 ( ESTsASS_Y_1 )
Representative transcript
(Non-protein coding transcript.)
genome : 508,408 - 509,593 (1,186)
query : 1 - 384 (384/384)
10 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213648)
ESTs used for assembly :
DB248024
10000
1-10000 N
BX640545.2
10001-44821 F +
NCBI
50000
44822-94821 N
AL954722.18
94822-132592 F +
NCBI
BX537334.4
132593-167464 F -
NCBI
BX000483.7
167465-181384 F +
NCBI
50000
181385-231384 N
AL954664.18
231385-262288 F -
NCBI
BX000476.5
262289-295528 F +
NCBI
AL732314.18
295529-512251 F +
NCBI
BX004827.19
512252-580112 F +
NCBI
AL683871.15
580113-753877 F +
NCBI
AL672311.26
753878-867875 F +
NCBI
AL672277.20
867876-997557 F +
NCBI
50000
997558-1047557 N
BX908402.3
1047558-1084113 F +
NCBI
50000
1084114-1134113 N
BX649635.3
1134114-1177822 F +
NCBI
BX901949.9
1177823-1214234 F +
NCBI
50000
1214235-1264234 N
BX908382.8
1264235-1297891 F +
NCBI
BX649553.6
1297892-1380773 F +
NCBI
BX901885.7
1380774-1415289 F +
NCBI
BX119906.16
1415290-1448955 F +
NCBI
AL683870.15
1448956-1600000 F +
NCBI