bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
M.mulatta
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_001088134
genome : 143,055,327 - 143,380,477 (325,151)
query : 1 - 10,447 (10,447/10,447)
38 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000011723
genome : 143,055,413 - 143,377,239 (321,827)
query : 1 - 7,260 (7,260/7,260)
35 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000045419
genome : 143,055,413 - 143,377,239 (321,827)
query : 1 - 7,383 (7,383/7,383)
37 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000012087
genome : 143,055,954 - 143,376,325 (320,372)
query : 1 - 5,994 (5,994/5,994)
37 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000012088
genome : 143,056,061 - 143,376,325 (320,265)
query : 1 - 5,539 (5,539/5,539)
35 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000012089
genome : 143,282,266 - 143,375,703 (93,438)
query : 1 - 2,952 (2,952/2,952)
21 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
AB179174
Representative transcript
genome : 143,304,889 - 143,376,212 (71,324)
query : 1 - 2,550 (2,550/2,572)
17 exons
identity = 0.997
5'(1.000;0.983)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000500360
Pan
sp. (Chimpanzee) : XR_020222
Pongo
sp. (Orangutan) : ENSPPYT00000000169
Mus
sp. (Mouse) : AK138649
Rattus
sp. (Rat) : AF021935
Canis
sp. (Dog) : XM_858531
Equus
sp. (Horse) : XM_001490044
Bos
sp. (Cow) : ENSBTAT00000029173
Monodelphis
sp. (Opossum) : XM_001368345
Gallus
sp. (Chicken) : CR523827
Danio
sp. (Zebrafish) : BC155804
Danio
sp. (Zebrafish) : XM_691225
Oryzias
sp. (Medaka) : ENSORLT00000020132
Tetraodon
sp. (Tetraodon) : GSTENT00018476001
Takifugu
sp. (Fugu) : SINFRUT00000181336
XM_001089241
Representative transcript
genome : 143,383,267 - 143,429,900 (46,634)
query : 1 - 3,011 (3,011/3,011)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000032262
Pan
sp. (Chimpanzee) : XM_514248
Pongo
sp. (Orangutan) : ENSPPYT00000000170
Mus
sp. (Mouse) : AK014605
Rattus
sp. (Rat) : BC091388
Canis
sp. (Dog) : XM_537230
Equus
sp. (Horse) : XM_001491544
Bos
sp. (Cow) : BC114164
Monodelphis
sp. (Opossum) : ENSMODT00000036706
Gallus
sp. (Chicken) : XM_415040
Danio
sp. (Zebrafish) : BC076083
Danio
sp. (Zebrafish) : XM_693745
Oryzias
sp. (Medaka) : ENSORLT00000021446
Tetraodon
sp. (Tetraodon) : CR678242
Takifugu
sp. (Fugu) : SINFRUT00000143815
XM_001089359
genome : 143,383,267 - 143,428,994 (45,728)
query : 1 - 2,798 (2,798/2,798)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001089469
genome : 143,383,267 - 143,428,994 (45,728)
query : 1 - 2,939 (2,939/2,939)
15 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.953;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001089596
genome : 143,383,267 - 143,428,994 (45,728)
query : 1 - 2,921 (2,921/2,921)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001089020
genome : 143,383,267 - 143,428,945 (45,679)
query : 1 - 2,741 (2,741/2,741)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001088570
genome : 143,383,267 - 143,428,937 (45,671)
query : 1 - 2,200 (2,200/2,200)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001088794
genome : 143,383,267 - 143,428,937 (45,671)
query : 1 - 2,641 (2,641/2,641)
15 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.936;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001088907
genome : 143,383,267 - 143,428,933 (45,667)
query : 1 - 2,658 (2,658/2,658)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001089134
genome : 143,383,267 - 143,428,852 (45,586)
query : 1 - 2,960 (2,960/2,960)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001088678
genome : 143,383,267 - 143,392,964 (9,698)
query : 1 - 2,140 (2,140/2,140)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000012079
genome : 143,383,269 - 143,428,943 (45,675)
query : 1 - 2,868 (2,868/2,868)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000248403
(
AJ518975
)
genome : 143,056,061 - 143,375,703 (319,643)
query : 1 - 5,160 (5,160/5,160)
36 exons
identity = 0.987
5'(0.981;0.985)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000046339
(
AK126466
)
genome : 143,383,267 - 143,463,427 (80,161)
query : 1 - 5,524 (5,524/5,524)
19 exons
identity = 0.903
3'(0.940;0.977;1.000;0.963;0.965;0.989;0.976;
0.943;0.965;0.967;0.933;0.955;0.951;0.952;
0.912)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000017651
(
AK092784
)
genome : 143,383,267 - 143,428,937 (45,671)
query : 4 - 2,647 (2,644/2,647)
15 exons
identity = 0.948
3'(0.937;0.977;1.000;0.972;0.965;0.989;0.976;
0.943;0.965;0.967;0.933;0.955;0.967;0.886;
0.925)5'
coverage = 0.999
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000015361
(
AK090494
)
genome : 143,383,268 - 143,428,933 (45,666)
query : 1 - 2,660 (2,660/2,660)
15 exons
identity = 0.951
3'(0.939;0.977;1.000;0.972;0.965;0.989;0.976;
0.943;0.965;0.967;0.933;0.955;0.957;0.926;
0.922)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000046073
(
AK126200
)
genome : 143,383,269 - 143,428,937 (45,669)
query : 1 - 3,611 (3,611/3,611)
8 exons
identity = 0.936
3'(0.939;0.966;1.000;0.963;0.931;0.930;0.933;
0.925)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
pHIT000003512
genome : 143,422,886 - 143,426,004 (3,119)
query : 1 - 159 (159/159)
2 exons
identity = 0.913
5'(0.907;0.916)3'
coverage = 1.000
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig
143366583-143446582 F +