bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
O.latipes
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSORLT00000017065
Representative transcript
genome : 7,268,337 - 7,278,205 (9,869)
query : 1 - 3,183 (3,183/3,183)
19 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSORLT00000017177
Representative transcript
genome : 7,281,196 - 7,290,980 (9,785)
query : 1 - 3,598 (3,598/3,598)
23 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.996;1.000;1.000;1.000;0.977;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000384784
Pan
sp. (Chimpanzee) : XR_023240
Pongo
sp. (Orangutan) : ENSPPYT00000000176
Macaca
sp. (Macaque) : AB171818
Mus
sp. (Mouse) : AK169326
Rattus
sp. (Rat) : BC085765
Canis
sp. (Dog) : XM_858704
Equus
sp. (Horse) : XM_001491457
Bos
sp. (Cow) : D90073
Monodelphis
sp. (Opossum) : ENSMODT00000007685
Gallus
sp. (Chicken) : X52690
Danio
sp. (Zebrafish) : BC100001
Tetraodon
sp. (Tetraodon) : GSTENT00030380001
Takifugu
sp. (Fugu) : SINFRUT00000181211
H.sapiens
(Human) : pHIT000112951
H.sapiens
(Human) : pHIT000112954
ENSORLT00000017188
Representative transcript
genome : 7,283,164 - 7,284,283 (1,120)
query : 1 - 948 (948/948)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSORLT00000017190
genome : 7,283,214 - 7,284,235 (1,022)
query : 1 - 948 (948/948)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSORLT00000017238
Representative transcript
genome : 7,293,008 - 7,301,034 (8,027)
query : 1 - 1,657 (1,657/1,657)
15 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000098082
Pan
sp. (Chimpanzee) : XM_525073
Pongo
sp. (Orangutan) : ENSPPYT00000000177
Macaca
sp. (Macaque) : AB168419
Mus
sp. (Mouse) : AK089989
Rattus
sp. (Rat) : XM_001067807
Canis
sp. (Dog) : XM_849606
Equus
sp. (Horse) : XM_001491325
Bos
sp. (Cow) : XR_028331
Monodelphis
sp. (Opossum) : XM_001376905
Gallus
sp. (Chicken) : AJ719426
Danio
sp. (Zebrafish) : BC124703
Danio
sp. (Zebrafish) : XM_001332951
Tetraodon
sp. (Tetraodon) : GSTENT00030381001
Takifugu
sp. (Fugu) : SINFRUT00000144725
ENSORLT00000017240
genome : 7,293,021 - 7,301,034 (8,014)
query : 1 - 1,530 (1,530/1,530)
14 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
scaffold26_contig20268
7278088-7280321 W +
10
7280322-7280331 N
scaffold26_contig20269
7280332-7281930 W +
50
7281931-7281980 N
scaffold26_contig20270
7281981-7283296 W +
10
7283297-7283306 N
scaffold26_contig20271
7283307-7287988 W +
10
7287989-7287998 N
scaffold26_contig20272
7287999-7294087 W +
AT_rich
(TGGA)n
(TAGA)n
AT_rich
SINE_TE
(TAAA)n