bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.abelii
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSPPYT00000000169
Representative transcript
genome : 22,304,226 - 22,637,221 (332,996)
query : 1 - 5,701 (5,701/5,701)
36 exons
identity = 0.999
5'(0.993;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000500360
Pan
sp. (Chimpanzee) : XR_020222
Macaca
sp. (Macaque) : AB179174
Mus
sp. (Mouse) : AK138649
Rattus
sp. (Rat) : AF021935
Canis
sp. (Dog) : XM_858531
Equus
sp. (Horse) : XM_001490044
Bos
sp. (Cow) : ENSBTAT00000029173
Monodelphis
sp. (Opossum) : XM_001368345
Gallus
sp. (Chicken) : CR523827
Danio
sp. (Zebrafish) : BC155804
Danio
sp. (Zebrafish) : XM_691225
Oryzias
sp. (Medaka) : ENSORLT00000020132
Tetraodon
sp. (Tetraodon) : GSTENT00018476001
Takifugu
sp. (Fugu) : SINFRUT00000181336
ENSPPYT00000000170
Representative transcript
genome : 22,644,291 - 22,688,639 (44,349)
query : 1 - 2,071 (2,071/2,071)
16 exons
identity = 0.989
3'(0.993;0.978;0.867;0.982;1.000;0.889;0.981;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000032262
Pan
sp. (Chimpanzee) : XM_514248
Macaca
sp. (Macaque) : XM_001089241
Mus
sp. (Mouse) : AK014605
Rattus
sp. (Rat) : BC091388
Canis
sp. (Dog) : XM_537230
Equus
sp. (Horse) : XM_001491544
Bos
sp. (Cow) : BC114164
Monodelphis
sp. (Opossum) : ENSMODT00000036706
Gallus
sp. (Chicken) : XM_415040
Danio
sp. (Zebrafish) : BC076083
Danio
sp. (Zebrafish) : XM_693745
Oryzias
sp. (Medaka) : ENSORLT00000021446
Tetraodon
sp. (Tetraodon) : CR678242
Takifugu
sp. (Fugu) : SINFRUT00000143815
HIT000248403
(
AJ518975
)
genome : 22,304,226 - 22,636,593 (332,368)
query : 1 - 5,160 (5,160/5,160)
35 exons
identity = 0.972
5'(0.889;0.985)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000010274
(
AK027000
)
genome : 22,596,109 - 22,626,956 (30,848)
query : 2 - 2,484 (2,483/2,503)
10 exons
identity = 0.987
5'(0.981)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000046339
(
AK126466
)
genome : 22,643,469 - 22,735,085 (91,617)
query : 21 - 5,524 (5,504/5,524)
22 exons
identity = 0.953
3'(0.957;0.955;0.867;0.973;0.979;0.844;0.963;
0.988;0.993;0.965;0.967;0.987;0.985;0.981;
0.973;0.939)5'
coverage = 0.996
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000017651
(
AK092784
)
genome : 22,643,469 - 22,688,627 (45,159)
query : 4 - 2,647 (2,644/2,647)
16 exons
identity = 0.964
3'(0.954;0.955;0.867;0.982;0.979;0.844;0.963;
0.988;0.993;0.965;0.967;0.987;0.985;0.996;
0.984;0.962)5'
coverage = 0.999
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000015361
(
AK090494
)
genome : 22,643,470 - 22,688,623 (45,154)
query : 1 - 2,660 (2,660/2,660)
16 exons
identity = 0.965
3'(0.956;0.955;0.867;0.982;0.979;0.844;0.963;
0.988;0.993;0.965;0.967;0.987;0.985;0.990;
1.000;0.961)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000046073
(
AK126200
)
genome : 22,643,471 - 22,688,627 (45,157)
query : 1 - 3,611 (3,611/3,611)
10 exons
identity = 0.954
3'(0.956;0.944;0.867;0.973;0.922;0.958;0.968;
0.959;0.987;0.962)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
pHIT000003512
genome : 22,682,858 - 22,685,930 (3,073)
query : 1 - 159 (159/159)
2 exons
identity = 0.925
5'(0.980;0.902)3'
coverage = 1.000
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000439816
(
DQ573285
)
genome : 22,692,632 - 22,692,661 (30)
query : 1 - 30 (30/30)
1 exon
identity = 0.967
3'(0.967)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig595.71
22626465-22635890 W -
10
22635891-22635900 N
Contig595.70
22635901-22647283 W -
10
22647284-22647293 N
Contig595.69
22647294-22659469 W -
10
22659470-22659479 N
Contig595.68
22659480-22673801 W -
10
22673802-22673811 N
Contig595.67
22673812-22684324 W -
544
22684325-22684868 N
Contig595.66
22684869-22704609 W -
496
22704610-22705105 N
Contig595.65
22705106-22706464 W -