bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.abelii
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
CR861144
genome : 63,297,974 - 63,332,841 (34,868)
query : 18 - 2,560 (2,543/2,580)
13 exons
identity = 0.962
5'(1.000;1.000;1.000;1.000;1.000;0.578;1.000;
1.000;0.989;1.000;1.000;1.000;1.000)3'
coverage = 0.993
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
NM_001135485
genome : 63,297,974 - 63,332,841 (34,868)
query : 18 - 2,560 (2,543/2,580)
13 exons
identity = 0.962
5'(1.000;1.000;1.000;1.000;1.000;0.578;1.000;
1.000;0.989;1.000;1.000;1.000;1.000)3'
coverage = 0.993
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
CR861454
Representative transcript
genome : 63,297,959 - 63,333,089 (35,131)
query : 1 - 2,771 (2,771/2,875)
13 exons
identity = 0.963
5'(1.000;1.000;1.000;1.000;1.000;0.573;1.000;
1.000;0.989;1.000;1.000;1.000;0.997)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000191128
Pan
sp. (Chimpanzee) : XM_507840
Macaca
sp. (Macaque) : AB171003
Mus
sp. (Mouse) : AK167902
Rattus
sp. (Rat) : BC061759
Canis
sp. (Dog) : XM_856497
Equus
sp. (Horse) : XM_001503764
Bos
sp. (Cow) : BC105409
Monodelphis
sp. (Opossum) : XM_001365272
Gallus
sp. (Chicken) : AF108656
Danio
sp. (Zebrafish) : AF108655
Oryzias
sp. (Medaka) : ENSORLT00000014344
Tetraodon
sp. (Tetraodon) : CR686651
Takifugu
sp. (Fugu) : SINFRUT00000178536
NM_001133580
genome : 63,297,959 - 63,333,089 (35,131)
query : 1 - 2,771 (2,771/2,875)
13 exons
identity = 0.963
5'(1.000;1.000;1.000;1.000;1.000;0.573;1.000;
1.000;0.989;1.000;1.000;1.000;0.997)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
CR926102
genome : 63,298,018 - 63,332,845 (34,828)
query : 1 - 2,506 (2,506/2,525)
13 exons
identity = 0.961
5'(1.000;1.000;0.987;1.000;1.000;0.573;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPPYT00000002829
genome : 63,298,048 - 63,331,953 (33,906)
query : 1 - 1,581 (1,581/1,581)
15 exons
identity = 0.994
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.897;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPPYT00000002830
genome : 63,298,048 - 63,331,953 (33,906)
query : 1 - 1,569 (1,569/1,569)
15 exons
identity = 0.994
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.897;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPPYT00000002831
genome : 63,298,048 - 63,331,953 (33,906)
query : 1 - 723 (723/723)
8 exons
identity = 0.983
5'(1.000;1.000;0.913;0.946;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPPYT00000002832
genome : 63,318,496 - 63,331,953 (13,458)
query : 1 - 1,332 (1,332/1,332)
12 exons
identity = 0.992
5'(1.000;1.000;1.000;1.000;0.897;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPPYT00000002833
Representative transcript
genome : 63,333,493 - 63,337,105 (3,613)
query : 1 - 1,365 (1,365/1,365)
5 exons
identity = 0.997
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000014485
(
AK057878
)
genome : 63,297,998 - 63,333,090 (35,093)
query : 1 - 1,683 (1,683/1,683)
13 exons
identity = 0.918
5'(0.967;0.978;1.000;0.990;0.706;0.647;1.000;
0.990;0.984;0.987;1.000;0.991;0.905)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000049061
(
AK129790
)
genome : 63,298,018 - 63,332,837 (34,820)
query : 1 - 2,315 (2,315/2,317)
14 exons
identity = 0.943
5'(0.986;0.985;1.000;0.992;0.815;0.638;1.000;
0.990;0.973;0.987;1.000;0.991;0.973;0.973)3'
coverage = 0.999
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000100400
(
D00422
)
genome : 63,298,041 - 63,333,090 (35,050)
query : 2 - 2,734 (2,733/2,734)
13 exons
identity = 0.946
5'(0.979;0.985;1.000;0.992;0.815;0.638;1.000;
0.990;0.984;0.987;1.000;0.991;0.969)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000274162
(
CR594967
)
genome : 63,331,997 - 63,333,060 (1,064)
query : 1 - 1,068 (1,068/1,068)
1 exon
identity = 0.970
3'(0.970)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000077028
(
AF312024
)
genome : 63,334,105 - 63,740,723 (406,619)
query : 1 - 10,065 (10,065/10,065)
60 exons
identity = 0.850
3'(0.979)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig2312.8
63295431-63296933 W +
989
63296934-63297922 N
Contig2312.9
63297923-63299664 W +
147
63299665-63299811 N
Contig2312.10
63299812-63302092 W +
10
63302093-63302102 N
Contig2312.11
63302103-63310040 W +
136
63310041-63310176 N
Contig2312.12
63310177-63321277 W +
1092
63321278-63322369 N
Contig2312.13
63322370-63323675 W +
10
63323676-63323685 N
Contig2312.14
63323686-63335430 W +