bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.troglodytes
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_001142009
Representative transcript
genome : 207,525,559 - 207,551,827 (26,269)
query : 1 - 1,757 (1,757/1,757)
14 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000425096
Pongo
sp. (Orangutan) : CR858231
Macaca
sp. (Macaque) : XM_001087264
Mus
sp. (Mouse) : AK148111
Rattus
sp. (Rat) : X99267
Equus
sp. (Horse) : XM_001489714
Bos
sp. (Cow) : BC112811
Monodelphis
sp. (Opossum) : ENSMODT00000007728
Gallus
sp. (Chicken) : AY486554
Danio
sp. (Zebrafish) : AF178539
Tetraodon
sp. (Tetraodon) : CR647350
Takifugu
sp. (Fugu) : SINFRUT00000172776
XM_514247
genome : 207,525,603 - 207,551,882 (26,280)
query : 1 - 1,895 (1,895/1,895)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000003752
genome : 207,530,485 - 207,551,574 (21,090)
query : 1 - 1,421 (1,421/1,421)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000003753
genome : 207,530,491 - 207,551,574 (21,084)
query : 1 - 1,316 (1,316/1,316)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000058137
genome : 207,535,522 - 207,551,679 (16,158)
query : 1 - 1,551 (1,551/1,551)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000032787
(
BC006365
)
genome : 207,526,255 - 207,552,117 (25,863)
query : 1 - 2,486 (2,486/2,508)
13 exons
identity = 0.948
5'(0.706;0.981;0.986;0.993;1.000;0.995;1.000;
0.988)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig185.215
207530693-207542153 W +
612
207542154-207542765 N
Contig185.216
207542766-207546692 W +
L1ME4a
MIR
AluSx
FLAM_C
AluJo
L2
L3b
MIR
MIR3
AluJo
AluJb
FLAM_A
L2
AluSg
MIRb
L2
L2