bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.troglodytes
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_524864
Representative transcript
genome : 129,952,182 - 130,005,119 (52,938)
query : 1 - 4,697 (4,697/4,697)
24 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000042224
Pongo
sp. (Orangutan) : ENSPPYT00000001070
Macaca
sp. (Macaque) : XM_001106711
Mus
sp. (Mouse) : AK132202
Rattus
sp. (Rat) : ENSRNOT00000028709
Canis
sp. (Dog) : XM_540304
Equus
sp. (Horse) : XM_001490912
Bos
sp. (Cow) : BC140570
Monodelphis
sp. (Opossum) : ENSMODT00000023890
Gallus
sp. (Chicken) : D26324
Danio
sp. (Zebrafish) : BC124601
Oryzias
sp. (Medaka) : ENSORLT00000013296
Tetraodon
sp. (Tetraodon) : GSTENT00015370001
Takifugu
sp. (Fugu) : SINFRUT00000156000
ENSPTRT00000002349
genome : 129,967,678 - 130,004,661 (36,984)
query : 1 - 3,887 (3,887/3,887)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000058756
genome : 129,967,689 - 129,985,251 (17,563)
query : 1 - 1,191 (1,191/1,191)
8 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;0.992)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000058755
genome : 129,967,689 - 129,984,087 (16,399)
query : 1 - 750 (750/750)
6 exons
identity = 0.999
5'(1.000;1.000;1.000;0.987)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_524865
Representative transcript
genome : 130,000,586 - 130,015,146 (14,561)
query : 1 - 2,021 (2,021/2,021)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000084343
Pongo
sp. (Orangutan) : CR857801
Macaca
sp. (Macaque) : XM_001106777
Mus
sp. (Mouse) : AK050161
Rattus
sp. (Rat) : BC101876
Canis
sp. (Dog) : XM_540305
Equus
sp. (Horse) : ENSECAT00000019618
Bos
sp. (Cow) : BC103330
Monodelphis
sp. (Opossum) : XM_001365863
Gallus
sp. (Chicken) : ENSGALT00000000553
Danio
sp. (Zebrafish) : ENSDART00000025385
Danio
sp. (Zebrafish) : XM_689438
Oryzias
sp. (Medaka) : ENSORLT00000013179
Oryzias
sp. (Medaka) : ENSORLT00000017430
Tetraodon
sp. (Tetraodon) : GSTENT00015368001
Takifugu
sp. (Fugu) : SINFRUT00000131467
ENSPTRT00000002350
genome : 130,005,489 - 130,015,131 (9,643)
query : 1 - 2,148 (2,148/2,148)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000042983
genome : 130,005,489 - 130,015,131 (9,643)
query : 1 - 2,322 (2,322/2,322)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000002351
genome : 130,005,489 - 130,012,198 (6,710)
query : 1 - 2,159 (2,159/2,159)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000042224
(
D31891
)
genome : 129,966,418 - 130,005,032 (38,615)
query : 1 - 4,333 (4,333/4,333)
22 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;0.990;1.000;
0.994;1.000;0.994;1.000;1.000;1.000;0.931;
1.000;1.000;1.000;1.000;0.996)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000019930
(
AK095075
)
genome : 130,001,325 - 130,005,032 (3,708)
query : 1 - 2,321 (2,321/2,321)
5 exons
identity = 0.989
5'(0.981;1.000;0.990;1.000;0.996)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000084343
(
AY091458
)
genome : 130,005,564 - 130,015,116 (9,553)
query : 1 - 2,235 (2,235/2,250)
11 exons
identity = 0.990
3'(0.983;1.000;0.991;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.981)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000003579
(
AK001105
)
genome : 130,005,565 - 130,015,128 (9,564)
query : 10 - 2,083 (2,074/2,083)
10 exons
identity = 0.992
3'(0.987;1.000;0.991;1.000;1.000;1.000;1.000;
1.000;1.000;0.986)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig245.117
129980001-129993772 W +
687
129993773-129994459 N
Contig245.118
129994460-129995467 W +
1307
129995468-129996774 N
Contig245.119
129996775-129998847 W +
65
129998848-129998912 N
Contig245.120
129998913-130002247 W +
215
130002248-130002462 N
Contig245.121
130002463-130015152 W +
752
130015153-130015904 N
Contig245.122
130015905-130020000 W +