bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.troglodytes
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XR_023722
Representative transcript
genome : 210,014,144 - 210,092,231 (78,088)
query : 1 - 5,133 (5,133/5,133)
34 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000035891
Pongo
sp. (Orangutan) : CR859327
Macaca
sp. (Macaque) : XR_009727
Mus
sp. (Mouse) : AK027919
Rattus
sp. (Rat) : BC061974
Canis
sp. (Dog) : XM_843847
Equus
sp. (Horse) : XM_001497713
Bos
sp. (Cow) : BC134665
Gallus
sp. (Chicken) : ENSGALT00000018064
Tetraodon
sp. (Tetraodon) : CR679698
Takifugu
sp. (Fugu) : SINFRUT00000145954
H.sapiens
(Human) : HIT000433297
Pongo
sp. (Orangutan) : ENSPPYT00000000137
Mus
sp. (Mouse) : AK029317
Canis
sp. (Dog) : XM_536351
Equus
sp. (Horse) : XM_001497676
Bos
sp. (Cow) : BC123538
Monodelphis
sp. (Opossum) : XM_001369235
Gallus
sp. (Chicken) : XM_419576
Danio
sp. (Zebrafish) : ENSDART00000100721
Oryzias
sp. (Medaka) : ENSORLT00000000183
Takifugu
sp. (Fugu) : SINFRUT00000159511
ENSPTRT00000003823
genome : 210,014,146 - 210,017,179 (3,034)
query : 1 - 1,388 (1,388/1,388)
8 exons
identity = 0.992
3'(1.000;1.000;1.000;1.000;0.959;0.938;1.000;
1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000003824
genome : 210,014,147 - 210,017,181 (3,035)
query : 1 - 1,491 (1,491/1,491)
8 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.996;1.000;1.000;
1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000058114
genome : 210,014,260 - 210,017,177 (2,918)
query : 1 - 1,269 (1,269/1,269)
8 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;0.992;0.990;1.000;
1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000058112
genome : 210,014,397 - 210,016,200 (1,804)
query : 1 - 768 (768/768)
6 exons
identity = 0.999
3'(1.000;1.000;1.000;0.996;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000058113
genome : 210,014,397 - 210,016,200 (1,804)
query : 1 - 864 (864/864)
6 exons
identity = 0.988
3'(1.000;1.000;1.000;0.945;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000035891
(
BC012597
)
genome : 210,014,147 - 210,017,177 (3,031)
query : 5 - 1,491 (1,487/1,694)
8 exons
identity = 0.995
3'(0.997;0.995;0.995;0.988;0.992;0.984;1.000;
1.000)5'
coverage = 0.997
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000021757
(
AK096902
)
genome : 210,014,148 - 210,017,177 (3,030)
query : 1 - 1,381 (1,381/1,381)
8 exons
identity = 0.991
3'(0.997;0.995;0.995;0.988;0.983;0.971;0.993;
0.978)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig150.19
209980001-209982940 W +
767
209982941-209983707 N
Contig150.20
209983708-209993039 W +
243
209993040-209993282 N
Contig150.21
209993283-209994526 W +
2018
209994527-209996544 N
Contig150.22
209996545-209998298 W +
10
209998299-209998308 N
Contig150.23
209998309-209999718 W +
171
209999719-209999889 N
Contig150.24
209999890-210004024 W +
148
210004025-210004172 N
Contig150.25
210004173-210007678 W +
1218
210007679-210008896 N
Contig150.26
210008897-210015711 W +
30
210015712-210015741 N
Contig150.27
210015742-210020000 W +