bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.troglodytes
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_001150793
genome : 54,991,362 - 55,013,465 (22,104)
query : 1 - 2,132 (2,132/2,132)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_513421
genome : 54,991,362 - 55,013,465 (22,104)
query : 1 - 2,131 (2,131/2,131)
8 exons
identity = 0.999
3'(1.000;0.982;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001150662
genome : 54,991,362 - 55,013,461 (22,100)
query : 1 - 2,125 (2,125/2,125)
8 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.963;
0.998)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001150277
Representative transcript
genome : 54,991,362 - 55,013,447 (22,086)
query : 1 - 2,147 (2,147/2,147)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000076458
Pongo
sp. (Orangutan) : CR859956
Macaca
sp. (Macaque) : AB168526
Mus
sp. (Mouse) : AF116911
Rattus
sp. (Rat) : XM_001059237
Canis
sp. (Dog) : XM_536700
Equus
sp. (Horse) : XM_001488738
Bos
sp. (Cow) : BC102302
Monodelphis
sp. (Opossum) : XM_001380888
Gallus
sp. (Chicken) : AJ719736
Danio
sp. (Zebrafish) : BC155834
Tetraodon
sp. (Tetraodon) : AJ427223
Takifugu
sp. (Fugu) : SINFRUT00000143283
XM_001150600
genome : 54,991,362 - 55,013,444 (22,083)
query : 1 - 1,946 (1,946/1,946)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000001447
genome : 54,991,779 - 55,013,447 (21,669)
query : 1 - 1,694 (1,694/1,694)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000059170
genome : 54,996,610 - 55,013,403 (16,794)
query : 1 - 1,072 (1,072/1,072)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001150928
Representative transcript
genome : 55,010,790 - 55,059,576 (48,787)
query : 1 - 4,756 (4,756/4,756)
5 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000013288
Pongo
sp. (Orangutan) : ENSPPYT00000001588
Macaca
sp. (Macaque) : XM_001113562
Mus
sp. (Mouse) : AK008715
Rattus
sp. (Rat) : ENSRNOT00000048784
Canis
sp. (Dog) : XM_848147
Equus
sp. (Horse) : ENSECAT00000006894
Bos
sp. (Cow) : BC142457
Monodelphis
sp. (Opossum) : ENSMODT00000027174
Gallus
sp. (Chicken) : BX931314
Danio
sp. (Zebrafish) : XM_690995
Tetraodon
sp. (Tetraodon) : CR680665
Takifugu
sp. (Fugu) : SINFRUT00000143289
XM_001150996
genome : 55,013,570 - 55,061,763 (48,194)
query : 1 - 5,101 (5,101/5,101)
5 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000001448
genome : 55,013,599 - 55,060,789 (47,191)
query : 1 - 4,098 (4,098/4,098)
5 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001150855
genome : 55,014,114 - 55,059,576 (45,463)
query : 1 - 2,992 (2,992/2,992)
4 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000014261
(
AK057652
)
genome : 54,986,275 - 54,988,584 (2,310)
query : 1 - 1,817 (1,817/1,817)
2 exons
identity = 0.941
5'(0.988;0.911)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000076458
(
AF290615
)
genome : 54,991,767 - 55,013,436 (21,670)
query : 1 - 1,695 (1,695/1,709)
8 exons
identity = 0.996
3'(1.000;1.000;1.000;0.988;1.000;1.000;1.000;
0.989)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000043318
(
AK123445
)
genome : 54,991,764 - 55,008,008 (16,245)
query : 1 - 1,901 (1,901/1,901)
7 exons
identity = 0.993
3'(0.998;1.000;1.000;0.988;1.000;1.000;0.984)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000044840
(
AK124967
)
genome : 54,991,764 - 55,004,950 (13,187)
query : 1 - 2,486 (2,486/2,486)
5 exons
identity = 0.990
3'(0.998;1.000;1.000;0.988;0.985)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000048959
(
AK129688
)
genome : 54,993,122 - 54,994,885 (1,764)
query : 1 - 1,750 (1,750/1,750)
1 exon
identity = 0.975
3'(0.975)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000067235
(
AF086356
)
genome : 54,999,829 - 55,000,199 (371)
query : 1 - 366 (366/375)
1 exon
identity = 0.976
3'(0.976)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000010600
(
AK027328
)
genome : 55,010,137 - 55,012,752 (2,616)
query : 3 - 1,492 (1,490/1,492)
2 exons
identity = 0.986
3'(0.994;0.984)5'
coverage = 0.999
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000021343
(
AK096488
)
genome : 55,013,585 - 55,073,587 (60,003)
query : 1 - 2,538 (2,538/2,538)
5 exons
identity = 0.990
5'(0.994;1.000)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000013288
(
AK056674
)
genome : 55,013,599 - 55,060,789 (47,191)
query : 1 - 4,097 (4,097/4,097)
5 exons
identity = 0.992
5'(0.994;1.000)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig426.4
54980001-54986998 W +
571
54986999-54987569 N
Contig426.5
54987570-55016350 W +
569
55016351-55016919 N
Contig426.6
55016920-55017548 W +
1592
55017549-55019140 N
Contig426.7
55019141-55020000 W +