bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.troglodytes
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_001167925
genome : 129,267,423 - 129,277,667 (10,245)
query : 1 - 4,662 (4,662/4,662)
9 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_524862
genome : 129,267,423 - 129,277,667 (10,245)
query : 1 - 4,734 (4,734/4,734)
10 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001167834
genome : 129,267,423 - 129,275,335 (7,913)
query : 1 - 2,314 (2,314/2,314)
8 exons
identity = 0.992
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.982)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001167868
genome : 129,268,128 - 129,277,667 (9,540)
query : 1 - 3,907 (3,907/3,907)
9 exons
identity = 0.996
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.931;
1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001167899
genome : 129,268,128 - 129,277,667 (9,540)
query : 1 - 3,984 (3,984/3,984)
10 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.931;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000002314
genome : 129,268,391 - 129,275,333 (6,943)
query : 1 - 1,432 (1,432/1,432)
10 exons
identity = 0.993
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001168225
genome : 129,274,667 - 129,279,463 (4,797)
query : 1 - 3,131 (3,131/3,131)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001168251
genome : 129,274,667 - 129,279,463 (4,797)
query : 1 - 3,179 (3,179/3,179)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001168306
genome : 129,274,667 - 129,279,463 (4,797)
query : 1 - 3,254 (3,254/3,254)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_513772
genome : 129,274,667 - 129,279,463 (4,797)
query : 1 - 2,916 (2,916/2,916)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001168169
genome : 129,274,667 - 129,279,287 (4,621)
query : 1 - 2,907 (2,907/2,907)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000050506
genome : 129,275,680 - 129,279,254 (3,575)
query : 1 - 2,028 (2,028/2,028)
6 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000002315
genome : 129,276,387 - 129,279,267 (2,881)
query : 1 - 829 (829/829)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000002317
genome : 129,283,085 - 129,291,424 (8,340)
query : 1 - 306 (306/306)
4 exons
identity = 0.993
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000002318
genome : 129,283,085 - 129,290,263 (7,179)
query : 1 - 336 (336/336)
4 exons
identity = 0.994
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001165600
genome : 129,283,344 - 129,291,440 (8,097)
query : 1 - 439 (439/439)
5 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000058836
(
AB025904
)
genome : 129,268,087 - 129,275,334 (7,248)
query : 4 - 1,741 (1,738/1,757)
10 exons
identity = 0.985
5'(0.989;0.986;0.990;1.000;0.981;1.000;1.000;
1.000;0.992)3'
coverage = 0.998
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000038838
(
BC020590
)
genome : 129,275,662 - 129,279,253 (3,592)
query : 1 - 1,712 (1,712/1,780)
7 exons
identity = 0.998
3'(0.999;1.000;0.992;1.000;1.000;0.994;0.997)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000294282
(
CR615087
)
genome : 129,275,661 - 129,276,519 (859)
query : 1 - 859 (859/859)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000045558
(
AK125685
)
genome : 129,275,663 - 129,277,667 (2,005)
query : 1 - 2,005 (2,005/2,005)
1 exon
identity = 0.995
3'(0.995)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000011151
(
AK027879
)
genome : 129,275,726 - 129,279,233 (3,508)
query : 1 - 1,966 (1,966/1,966)
6 exons
identity = 0.997
3'(0.998;0.992;1.000;1.000;0.994;0.996)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000010148
(
AK026874
)
genome : 129,283,062 - 129,291,440 (8,379)
query : 1 - 504 (504/519)
5 exons
identity = 0.933
5'(0.986;0.989)3'
coverage = 0.994
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig245.41
129269065-129285013 W +
860
129285014-129285064 N
MIRm
AluSx
U13
AluSx
AluJb
LSU-rRNA_Hsa
L3b
AluSg
AluSx
AluY
AluSx
MIRm
MIRm
AluSx
AT_rich
L3b
THER1_MD
GA-rich
AluY
AluSq/x