bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.troglodytes
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_001140733
Representative transcript
genome : 206,865,706 - 206,869,350 (3,645)
query : 1 - 1,628 (1,628/1,651)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000340103
Pongo
sp. (Orangutan) : ENSPPYT00000000178
Macaca
sp. (Macaque) : XM_001091234
Mus
sp. (Mouse) : AF154573
Rattus
sp. (Rat) : XM_001061956
Equus
sp. (Horse) : XM_001491266
Bos
sp. (Cow) : ENSBTAT00000047295
Monodelphis
sp. (Opossum) : XM_001376893
Oryzias
sp. (Medaka) : ENSORLT00000021759
Tetraodon
sp. (Tetraodon) : GSTENT00013398001
ENSPTRT00000003743
genome : 206,865,706 - 206,868,538 (2,833)
query : 1 - 816 (816/816)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000003744
genome : 206,874,092 - 206,945,125 (71,034)
query : 1 - 2,847 (2,847/2,847)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_525073
Representative transcript
genome : 206,874,101 - 206,954,288 (80,188)
query : 1 - 3,347 (3,347/3,347)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000098082
Pongo
sp. (Orangutan) : ENSPPYT00000000177
Macaca
sp. (Macaque) : AB168419
Mus
sp. (Mouse) : AK089989
Rattus
sp. (Rat) : XM_001067807
Canis
sp. (Dog) : XM_849606
Equus
sp. (Horse) : XM_001491325
Bos
sp. (Cow) : XR_028331
Monodelphis
sp. (Opossum) : XM_001376905
Gallus
sp. (Chicken) : AJ719426
Danio
sp. (Zebrafish) : BC124703
Danio
sp. (Zebrafish) : XM_001332951
Oryzias
sp. (Medaka) : ENSORLT00000017238
Tetraodon
sp. (Tetraodon) : GSTENT00030381001
Takifugu
sp. (Fugu) : SINFRUT00000144725
ENSPTRT00000003745
genome : 206,874,101 - 206,953,980 (79,880)
query : 1 - 3,039 (3,039/3,039)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000058144
genome : 206,874,101 - 206,953,848 (79,748)
query : 1 - 3,004 (3,004/3,004)
15 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.969)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000045669
genome : 206,874,107 - 206,953,848 (79,742)
query : 1 - 2,996 (2,996/2,996)
15 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.975;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.969)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000093057
(
BC033346
)
genome : 206,827,168 - 206,839,165 (11,998)
query : 1 - 633 (633/649)
3 exons
identity = 0.995
5'(0.994)3'
coverage = 0.998
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000340103
(
BC111974
)
genome : 206,865,706 - 206,868,538 (2,833)
query : 1 - 816 (816/816)
2 exons
identity = 0.994
5'(0.993;0.994)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000045563
(
AK125690
)
genome : 206,874,106 - 206,921,714 (47,609)
query : 1 - 2,336 (2,336/2,358)
9 exons
identity = 0.995
3'(0.993;1.000;1.000;1.000;1.000;1.000;1.000;
0.993;0.980)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000098082
(
BC045625
)
genome : 206,874,106 - 206,945,125 (71,020)
query : 390 - 3,325 (2,936/3,340)
14 exons
identity = 0.996
3'(0.992;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.994;1.000;0.993;1.000;1.000;1.000)5'
coverage = 0.883
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000046050
(
AK126177
)
genome : 206,874,825 - 206,945,125 (70,301)
query : 57 - 2,170 (2,114/2,170)
13 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.994;0.992;0.993;1.000;1.000)5'
coverage = 0.974
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig185.168
206834194-206838298 W +
30
206838299-206838328 N
Contig185.169
206838329-206863399 W +
604
206863400-206864003 N
Contig185.170
206864004-206866368 W +
518
206866369-206866886 N
Contig185.171
206866887-206870445 W +
338
206870446-206870783 N
Contig185.172
206870784-206896726 W +
74
206896727-206896800 N
Contig185.173
206896801-206896983 W +
66
206896984-206897049 N
Contig185.174
206897050-206902085 W +
30
206902086-206902115 N
Contig185.175
206902116-206949267 W +
242
206949268-206949509 N
Contig185.176
206949510-206952831 W +
950
206952832-206953781 N
Contig185.177
206953782-206956131 W +
812
206956132-206956943 N
Contig185.178
206956944-206978255 W +
409
206978256-206978664 N
Contig185.179
206978665-206994193 W +