bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.troglodytes
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_507839
Representative transcript
genome : 70,558,427 - 70,945,326 (386,900)
query : 1 - 10,783 (10,783/10,783)
67 exons
identity = 0.998
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000077028
Pongo
sp. (Orangutan) : ENSPPYT00000002834
Macaca
sp. (Macaque) : XR_013331
Mus
sp. (Mouse) : AJ888001
Rattus
sp. (Rat) : AB053447
Canis
sp. (Dog) : ENSCAFT00000022666
Equus
sp. (Horse) : XM_001917698
Bos
sp. (Cow) : ENSBTAT00000028652
Monodelphis
sp. (Opossum) : XM_001365007
Gallus
sp. (Chicken) : XM_421595
Danio
sp. (Zebrafish) : ENSDART00000016602
Oryzias
sp. (Medaka) : ENSORLT00000016841
Takifugu
sp. (Fugu) : SINFRUT00000146814
ENSPTRT00000004896
genome : 70,558,427 - 70,945,044 (386,618)
query : 1 - 10,015 (10,015/10,015)
63 exons
identity = 0.998
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001136340
Representative transcript
genome : 70,945,375 - 70,946,857 (1,483)
query : 1 - 1,146 (1,146/1,146)
2 exons
identity = 0.997
5'(0.957;0.998)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_507840
Representative transcript
genome : 70,945,676 - 70,981,941 (36,266)
query : 1 - 2,695 (2,695/2,695)
15 exons
identity = 0.996
3'(1.000;0.993;1.000;1.000;1.000;1.000;1.000;
1.000;0.924;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000191128
Pongo
sp. (Orangutan) : CR861454
Macaca
sp. (Macaque) : AB171003
Mus
sp. (Mouse) : AK167902
Rattus
sp. (Rat) : BC061759
Canis
sp. (Dog) : XM_856497
Equus
sp. (Horse) : XM_001503764
Bos
sp. (Cow) : BC105409
Monodelphis
sp. (Opossum) : XM_001365272
Gallus
sp. (Chicken) : AF108656
Danio
sp. (Zebrafish) : AF108655
Oryzias
sp. (Medaka) : ENSORLT00000014344
Tetraodon
sp. (Tetraodon) : CR686651
Takifugu
sp. (Fugu) : SINFRUT00000178536
ENSPTRT00000042363
genome : 70,945,679 - 70,981,891 (36,213)
query : 1 - 2,819 (2,819/2,819)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000046096
genome : 70,945,756 - 70,981,891 (36,136)
query : 1 - 1,784 (1,784/1,784)
14 exons
identity = 0.990
3'(0.938;0.922;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000077028
(
AF312024
)
genome : 70,558,427 - 70,944,662 (386,236)
query : 1 - 10,065 (10,065/10,065)
63 exons
identity = 0.963
5'(0.985)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000014485
(
AK057878
)
genome : 70,945,677 - 70,981,837 (36,161)
query : 1 - 1,683 (1,683/1,683)
14 exons
identity = 0.982
3'(0.957;0.915;1.000;1.000;1.000;1.000;1.000;
0.952;1.000;0.979;0.960;1.000;0.993;0.989)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000100400
(
D00422
)
genome : 70,945,677 - 70,981,794 (36,118)
query : 2 - 2,734 (2,733/2,734)
14 exons
identity = 0.988
3'(0.981;0.991;1.000;1.000;1.000;1.000;1.000;
0.909;1.000;0.995;0.992;1.000;1.000;0.979)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000274162
(
CR594967
)
genome : 70,945,707 - 70,946,774 (1,068)
query : 1 - 1,068 (1,068/1,068)
1 exon
identity = 0.982
5'(0.982)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000049061
(
AK129790
)
genome : 70,945,928 - 70,981,817 (35,890)
query : 1 - 2,317 (2,317/2,317)
15 exons
identity = 0.987
3'(1.000;0.976;0.991;1.000;1.000;0.989;1.000;
1.000;0.909;1.000;0.995;0.992;1.000;1.000;
0.986)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig310.78
70943785-70957771 W +
10
70957772-70957781 N
Contig310.79
70957782-70968405 W +
10
70968406-70968415 N
Contig310.80
70968416-70969653 W +
536
70969654-70970189 N
Contig310.81
70970190-70980022 W +
917
70980023-70980939 N
Contig310.82
70980940-70983783 W +