bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
R.norvegicus
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSRNOT00000000696
genome : 27,595,048 - 27,621,574 (26,527)
query : 1 - 2,178 (2,178/2,178)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
M19936
genome : 27,595,048 - 27,621,574 (26,527)
query : 1 - 2,175 (2,175/2,175)
14 exons
identity = 0.995
5'(0.985;0.993;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.996;1.000;1.000;0.981;0.990)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
NM_013013
genome : 27,595,048 - 27,621,574 (26,527)
query : 1 - 2,175 (2,175/2,175)
14 exons
identity = 0.995
5'(0.985;0.993;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.996;1.000;1.000;0.981;0.990)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
S81353
genome : 27,595,048 - 27,621,089 (26,042)
query : 1 - 1,692 (1,692/1,692)
14 exons
identity = 0.996
5'(0.985;0.993;1.000;0.992;1.000;1.000;1.000;
0.992;1.000;0.996;1.000;1.000;0.981;1.000)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
S81373
genome : 27,595,051 - 27,621,136 (26,086)
query : 1 - 1,736 (1,736/1,737)
14 exons
identity = 0.997
5'(0.985;1.000;1.000;0.992;1.000;1.000;1.000;
1.000;1.000;0.996;0.987;1.000;0.991;1.000)3'
coverage = 0.999
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
BC061759
Representative transcript
genome : 27,595,065 - 27,621,907 (26,843)
query : 1 - 2,491 (2,491/2,505)
14 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.996;1.000;1.000;1.000;0.998)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000191128
Pan
sp. (Chimpanzee) : XM_507840
Pongo
sp. (Orangutan) : CR861454
Macaca
sp. (Macaque) : AB171003
Mus
sp. (Mouse) : AK167902
Canis
sp. (Dog) : XM_856497
Equus
sp. (Horse) : XM_001503764
Bos
sp. (Cow) : BC105409
Monodelphis
sp. (Opossum) : XM_001365272
Gallus
sp. (Chicken) : AF108656
Danio
sp. (Zebrafish) : AF108655
Oryzias
sp. (Medaka) : ENSORLT00000014344
Tetraodon
sp. (Tetraodon) : CR686651
Takifugu
sp. (Fugu) : SINFRUT00000178536
ENSRNOT00000057780
genome : 27,609,197 - 27,621,089 (11,893)
query : 1 - 1,635 (1,635/1,635)
13 exons
identity = 0.996
5'(1.000;1.000;1.000;1.000;1.000;0.938;0.985;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
AB053447
Representative transcript
genome : 27,622,050 - 28,016,145 (394,096)
query : 1 - 10,908 (10,908/10,927)
66 exons
identity = 0.984
3'(0.983;1.000;0.992;1.000;1.000;1.000;0.992;
1.000;1.000)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000077028
Pan
sp. (Chimpanzee) : XM_507839
Pongo
sp. (Orangutan) : ENSPPYT00000002834
Macaca
sp. (Macaque) : XR_013331
Mus
sp. (Mouse) : AJ888001
Canis
sp. (Dog) : ENSCAFT00000022666
Equus
sp. (Horse) : XM_001917698
Bos
sp. (Cow) : ENSBTAT00000028652
Monodelphis
sp. (Opossum) : XM_001365007
Gallus
sp. (Chicken) : XM_421595
Danio
sp. (Zebrafish) : ENSDART00000016602
Oryzias
sp. (Medaka) : ENSORLT00000016841
Takifugu
sp. (Fugu) : SINFRUT00000146814
NM_053644
genome : 27,622,050 - 28,016,145 (394,096)
query : 1 - 10,908 (10,908/10,927)
66 exons
identity = 0.984
3'(0.983;1.000;0.992;1.000;1.000;1.000;0.992;
1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSRNOT00000043015
genome : 27,622,668 - 27,980,157 (357,490)
query : 1 - 10,053 (10,053/10,053)
68 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSRNOT00000048029
genome : 27,622,668 - 27,980,157 (357,490)
query : 1 - 9,948 (9,948/9,948)
67 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
AABR03118127.1
27588486-27589807 W +
173
27589808-27589980 N
AABR03116938.1
27589981-27610736 W +
1284
27610737-27612020 N
AABR03116444.1
27612021-27628485 W +