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1.2 Publications related to H-InvDB

The main paper:

Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones. T. Imanishi et al. (2004) PLoS Biology 2 (6), 856-875.

Related papers:

  1. Diversity of preferred nucleotide sequences around the translation initiation codon in eukaryote genomes. Nakagawa S, et al. (2008) Nucleic Acids Research
  2. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. Yamasaki C, et al. (2008) Nucleic Acids Research (Database Issue)
  3. Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees. Matsuya A, et al. (2008) Nucleic Acids Research (Database Issue)
  4. Mapping of chimpanzee full-length cDNAs onto the human genome unveils large potential divergence of the transcriptome. Sakate R, et al. (2007) Gene 399(1): 1-10.
  5. Frequent emergence and functional resurrection of processed pseudogenes in the human and mouse genomes. Sakai H, et al. (2007) Gene 389(2) 196-203.
  6. H-DBAS: Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational. Takeda, J. et al. (2007) Nucleic Acids Research 35 (Database issue), D104-D109.
  7. Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56 419 completely sequenced and manually annotated\ full-length cDNAs. Takeda, J. et al. (2006) Nucleic Acids Research 34 (14), 3917-3928.
  8. Alternative splicing in human transcriptome: Functional and structural influence on proteins. Yura, K. et al. (2006) Gene 380 (2), 63-71.
  9. TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB, Yamasaki C. et al. (2006) Nucleic Acids Research 34 (Web Server issue) W345-W349.
  10. Investigation of protein functions through data-mining on integrated human transcriptome database, H-Invitational Database (H-InvDB). Yamasaki C. et al. (2005) Gene 364, 99-107.
  11. A web tool for comparative genomics: G-compass. Fujii Y. et al.(2005) Gene 364, 45-52.
  12. Comparative genomics of bidirectional gene pairs and its implications for the evolution of a transcriptional regulation system. Koyanagi K.O. et al. (2005) Gene 353 (2), 169-176.
  13. Large-scale analysis of human alternative protein isoforms: pattern classification and correlation with subcellular localization signals M. Nakao et al. (2005) Nucleic Acids Research 33 (8), 2355-2363.
  14. The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms. M. Tanino et al. (2005) Nucleic Acids Research 33 (Database issue), D567-D572.
Revised: December 26, 2007