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Transcript view Locus view G-integra DiseaseInfo Viewer H-ANGEL Evola PPI view Gene Family/Group Hyperlink MS |
H-Inv protein ID: | HIP000021507 | Last modified: | 27-May-2015 |
Definition: | Similar to Integrin alpha-6; CD49 antigen-like family member F; VLA-6; AltName: CD_antigen=CD49f; Contains: Integrin alpha-6 heavy chain; Contains: Integrin alpha-6 light chain; Precursor; |
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Coresponding transcript member (s) |
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No. | 1 | |
H-Inv ID | HIT000321841 | |
H-Inv cluster ID | HIX0023932 | |
Accession number | X53586.1 | |
CAGE tag ID | NA | |
EST ID | NA | |
Coding potential | Protein coding | |
Definition | Similar to Integrin alpha-6; CD49 antigen-like family member F; VLA-6; AltName: CD_antigen=CD49f; Contains: Integrin alpha-6 heavy chain; Contains: Integrin alpha-6 light chain; Precursor; | |
Similarity category | Similar to known protein(Category II). | |
Similar to known protein (P23229) [Identity/coverage = 99.725%/100.0%] to Homo sapiens (Human). protein. | ||
Transcript feature | Representative transcript; Splicing isoform; | |
Genomic Location | Chromosome | 2 |
Location | 2q31.1 | |
CDS position | 173292370-173371010 | |
Strand | + | |
Gene structure | 26 exons |
Motif information in predicted CDS |
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a.a. length |
InterPro | Name |
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66 | IPR013519 | Integrin alpha beta-propellor [Repeat] | |
62 | IPR013519 | Integrin alpha beta-propellor [Repeat] | |
66 | IPR013519 | Integrin alpha beta-propellor [Repeat] | |
54 | IPR013519 | Integrin alpha beta-propellor [Repeat] | |
57 | IPR013519 | Integrin alpha beta-propellor [Repeat] | |
50 | IPR013519 | Integrin alpha beta-propellor [Repeat] | |
13 | IPR000413 | Integrin alpha chain [Family] | |
12 | IPR000413 | Integrin alpha chain [Family] | |
63 | IPR013519 | Integrin alpha beta-propellor [Repeat] | |
21 | IPR000413 | Integrin alpha chain [Family] | |
57 | IPR013519 | Integrin alpha beta-propellor [Repeat] | |
56 | IPR013519 | Integrin alpha beta-propellor [Repeat] | |
54 | IPR013519 | Integrin alpha beta-propellor [Repeat] | |
25 | IPR000413 | Integrin alpha chain [Family] | |
60 | IPR013519 | Integrin alpha beta-propellor [Repeat] | |
56 | IPR013519 | Integrin alpha beta-propellor [Repeat] | |
22 | IPR000413 | Integrin alpha chain [Family] | |
20 | IPR000413 | Integrin alpha chain [Family] | |
476 | IPR013649 | Integrin alpha-2 [Domain] | |
14 | IPR000413 | Integrin alpha chain [Family] | |
20 | IPR000413 | Integrin alpha chain [Family] | |
8 | IPR018184 | Integrin alpha chain, C-terminal cytoplasmic region, conserved site [Conserved_site] | |
14 | IPR018184 | Integrin alpha chain, C-terminal cytoplasmic region, conserved site [Conserved_site] |
Protein function information |
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H-Inv protein ID | HIP000021507 | |
Representative H-Inv transcript ID | HIT000321841 | |
H-Inv cluster ID | HIX0023932 | |
Definition | Similar to Integrin alpha-6; CD49 antigen-like family member F; VLA-6; AltName: CD_antigen=CD49f; Contains: Integrin alpha-6 heavy chain; Contains: Integrin alpha-6 light chain; Precursor; | |
Similarity category | Similar to known protein(Category II). | |
Similar to known protein (P23229) [Identity/coverage = 99.725%/100.0%] to Homo sapiens (Human). protein. | ||
Gene family/group | H-Inv gene family/group ID | NA |
Gene family/group name | NA | |
Evidence motif (InterPro) ID | NA | |
EC number | NA | |
KEGG metabolic pathway | NA | |
Protein-protein interaction (PPI) | No. of interaction | 12 |
Interaction partner(s) | HIP000029097; HIP000029955; HIP000029955; HIP000068941; HIP000070198; HIP000080650; HIP000102365; HIP000102365; HIP000166291; HIP000166291; HIP000169506; HIP000169506; | |
BIND | 24515; 24516; 24801; | |
DIP | NA | |
MINT | NA | |
HPRD | 00150; 00223; 00252; 00628; 00946; 01038; 01121; 01430; 01501; 03150; 03180; 03763; 04091; 05462; 08985; 09004; | |
IntAct | NA | |
Database links | RefSeq | NA |
UniProt | NA | |
CCDS | NA | |
Gene symbol/name | HGNC symbol | NA |
HGNC aliases | NA | |
HGNC name | NA | |
Related H-InvDB links | G-integra ; PPI view ; TACT ; |
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Protein structure information (GTOP) | Last modified : 27-May-2015 |
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Evolutionary information |
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Relationship | Species | Accession number | MGI | Links |
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Orthology | Danio sp. (Zebrafish) | BC090458 | G-integra | |
Orthology | Equus sp. (Horse) | ENSECAT00000006140 | G-integra | |
Orthology | Mus sp. (Mouse) | ENSMUST00000028522 | G-integra | |
Orthology | Oryzias sp. (Medaka) | ENSORLT00000018009 | G-integra | |
Orthology | Oryzias sp. (Medaka) | ENSORLT00000021756 | G-integra | |
Orthology | Pongo sp. (Orangutan) | ENSPPYT00000015026 | G-integra | |
Orthology | Tetraodon sp. (Tetraodon) | GSTENT00020949001 | G-integra | |
Orthology | Tetraodon sp. (Tetraodon) | GSTENT00029239001 | G-integra | |
Orthology | Tetraodon sp. (Tetraodon) | GSTENT00031433001 | G-integra | |
Orthology | Bos sp. (Cow) | NM_001109981 | G-integra | |
Orthology | Takifugu sp. (Fugu) | SINFRUT00000180156 | G-integra | |
Orthology | Takifugu sp. (Fugu) | SINFRUT00000180745 | G-integra | |
Orthology | Gallus sp. (Chicken) | X56559 | G-integra | |
Orthology | Rattus sp. (Rat) | XM_001059408 | G-integra | |
Orthology | Monodelphis sp. (Opossum) | XM_001368083 | G-integra | |
Orthology | Danio sp. (Zebrafish) | XM_001922966 | G-integra | |
Orthology | Pan sp. (Chimpanzee) | XM_515909 | G-integra | |
Orthology | Canis sp. (Dog) | XM_855851 | G-integra |
Phylogenetic tree [View by ATV] | TNeighbor-joining (phb) |
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Related H-InvDB links | Evola; dN/dS; |
Translation polymorphism (SNP) and microsatellite (STR) information |
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