H-InvDB x AHG DB
Protein view
H-InvDB_9.0 released on May 27, 2015.
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H-Inv protein ID: HIP000021507 Last modified: 27-May-2015
Definition: Similar to Integrin alpha-6; CD49 antigen-like family member F; VLA-6; AltName: CD_antigen=CD49f; Contains: Integrin alpha-6 heavy chain; Contains: Integrin alpha-6 light chain; Precursor;
[Summery][Full]
[Protein Info][Member][Motif] 
provide location, ID and descriptions of functional motifs (InterPro)[Function] 
provide human-curated functional definition, similarity
category and related evidences;  Gene name; 
HUGO gene symbols; GO term; EC number; pathway information (KEGG)[PTM][Subcellular loc.] 
provide subcellular localization prediction by WolfPSORT, Target P, SOSUI, TMHMM and PTS1[Protein Structure][Evolutionary info.] 
provide orthologs relationships, phylogenic trees and sequence alignments[Polymorphism/repeat] 
provide polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Protein information
HIP ID HIP000021507
Length 1073
Codon Adaptation Index (CAI). 0.717
Database links RefSeq NA
UniProt NA
CCDS NA
Original transcript information
Representative H-Inv transcript ID Transcript view HIT000321841
H-Inv cluster ID Locus view HIX0023932
Predicted CDS 147..3368 ; 1073[aa] ; Orientation:+3 ;
Genomic location Chromosome 2
Location 2q31.1
CDS position 173292370-173371010
Strand +
Accession number X53586.1
CAGE tag ID NA
EST ID NA
Clone Number 26.44, 26.1-7
Experimental resources NBRC: NITE Biological Resource Center NBRC      
Length of cDNA 5629[bp] (No. of exon:26)[A:1666 T:1582 G:1284 C:1097] ;
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:3655 ;
KEGG GENES KEGG GENES(3655) ;
GeneCard GeneCard NA
etc H-GOLD Human-Gene diversity Of Life-style related Diseases ;
Protein view


Coresponding transcript member (s)
No.1
H-Inv IDTranscript view HIT000321841
H-Inv cluster IDLocus view HIX0023932
Accession numberX53586.1
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionSimilar to Integrin alpha-6; CD49 antigen-like family member F; VLA-6; AltName: CD_antigen=CD49f; Contains: Integrin alpha-6 heavy chain; Contains: Integrin alpha-6 light chain; Precursor;
Similarity category HelpSimilar to known protein(Category II).
Similar to known protein (P23229) [Identity/coverage = 99.725%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help Representative H-Inv IDRepresentative transcript; Splicing isoformSplicing isoform;
Genomic Location G-integra Help Chromosome2
Location2q31.1
CDS position173292370-173371010
Strand+
Gene structure26 exons

Motif information in predicted CDS
ORF

length(1074),orf(147:3368)
MAAAGQLCLLYLSAGLLSRLGAAFNLDTREDNVIRKYGDPGSLFGFSLAM
HWQLQPEDKRLLLVGAPRGEALPLQRANRTGGLYSCDITARGPCTRIEFD
NDADPTSESKEDQWMGVTVQSQGPGGKVVTCAHRYEKRQHVNTKQESRDI
FGRCYVLSQNLRIEDDMDGGDWSFCDGRLRGHEKFGSCQQGVAATFTKDF
HYIVFGAPGTYNWKGIVRVEQKNNTFFDMNIFEDGPYEVGGETEHDESLV
PVPANSYLGFSLDSGKGIVSKDEITFVSGAPRANHSGAVVLLKRDMKSAH
LLPEHIFDGEGLASSFGYDVAVVDLNKDGWQDIVIGAPQYFDRDGEVGGA
VYVYMNQQGRWNNVKPIRLNGTKDSMFGIAVKNIGDINQDGYPDIAVGAP
YDDLGKVFIYHGSANGINTKPTQVLKGISPYFGYSIAGNMDLDRNSYPDV
AVGSLSDSVTIFRSRPVINIQKTITVTPNRIDLRQKTACGAPSGICLQVK
SCFEYTANPAGYNPSISIVGTLEAEKERRKSGLSSRVQFRNQGSEPKYTQ
ELTLKRQKQKVCMEETLWLQDNIRDKLRPIPITASVEIQEPSSRRRVNSL
PEVLPILNSDEPKTAHIDVHFLKEGCGDDNVCNSNLKLEYKFCTREGNQD
KFSYLPIQKGVPELVLKDQKDIALEITVTNSPSNPRNPTKDGDDAHEAKL
IATFPDTLTYSAYRELRAFPEKQLSCVANQNGSQADCELGNPFKRNSNVT
FYLVLSTTEVTFDTPYLDINLKLETTSNQDNLAPITAKAKVVIELLLSVS
GVAKPSQVYFGGTVVGEQAMKSEDEVGSLIEYEFRVINLGKPLTNLGTAT
LNIQWPKEISNGKWLLYLVKVESKGLEKVTCEPQKEINSLNLTESHNSRK
KREITEKQIDDNRKFSLFAERKYQTLNCSVNVNCVNIRCPLRGLDSKASL
ILRSRLWNSTFLEEYSKLNYLDILMRAFIDVTAAAENIRLPNAGTQVRVT
VFPSKTVAQYSGVPWWIILVAILAGILMLALLVFILWKCGFFKRNKKDHY
DATYHKAEIHAQPSDKERLTSDA*
a.a.
length
InterPro Name
length(66), motif(30:95) 66IPR013519Integrin alpha beta-propellor [Repeat]
length(62), motif(40:101) 62IPR013519Integrin alpha beta-propellor [Repeat]
length(66), motif(101:166) 66IPR013519Integrin alpha beta-propellor [Repeat]
length(54), motif(176:229) 54IPR013519Integrin alpha beta-propellor [Repeat]
length(57), motif(244:300) 57IPR013519Integrin alpha beta-propellor [Repeat]
length(50), motif(254:303) 50IPR013519Integrin alpha beta-propellor [Repeat]
length(13), motif(255:267) 13IPR000413Integrin alpha chain [Family]
length(12), motif(275:286) 12IPR000413Integrin alpha chain [Family]
length(63), motif(301:363) 63IPR013519Integrin alpha beta-propellor [Repeat]
length(21), motif(309:329) 21IPR000413Integrin alpha chain [Family]
length(57), motif(312:368) 57IPR013519Integrin alpha beta-propellor [Repeat]
length(56), motif(364:419) 56IPR013519Integrin alpha beta-propellor [Repeat]
length(54), motif(373:426) 54IPR013519Integrin alpha beta-propellor [Repeat]
length(25), motif(376:400) 25IPR000413Integrin alpha chain [Family]
length(60), motif(420:479) 60IPR013519Integrin alpha beta-propellor [Repeat]
length(56), motif(428:483) 56IPR013519Integrin alpha beta-propellor [Repeat]
length(22), motif(432:453) 22IPR000413Integrin alpha chain [Family]
length(20), motif(458:477) 20IPR000413Integrin alpha chain [Family]
length(476), motif(464:939) 476IPR013649Integrin alpha-2 [Domain]
length(14), motif(575:588) 14IPR000413Integrin alpha chain [Family]
length(20), motif(1025:1044) 20IPR000413Integrin alpha chain [Family]
length(8), motif(1037:1044) 8IPR018184Integrin alpha chain, C-terminal cytoplasmic region, conserved site [Conserved_site]
length(14), motif(1038:1051) 14IPR018184Integrin alpha chain, C-terminal cytoplasmic region, conserved site [Conserved_site]

Protein function information
H-Inv protein ID HIP000021507
Representative H-Inv transcript ID Transcript view HIT000321841
H-Inv cluster ID Locus view HIX0023932
Definition Similar to Integrin alpha-6; CD49 antigen-like family member F; VLA-6; AltName: CD_antigen=CD49f; Contains: Integrin alpha-6 heavy chain; Contains: Integrin alpha-6 light chain; Precursor;
Similarity category Help Similar to known protein(Category II).
Similar to known protein (P23229) [Identity/coverage = 99.725%/100.0%] to Homo sapiens (Human). protein.
Gene family/group H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
EC number NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer No. of interaction 12
Interaction partner(s) HIP000029097; HIP000029955; HIP000029955; HIP000068941; HIP000070198; HIP000080650; HIP000102365; HIP000102365; HIP000166291; HIP000166291; HIP000169506; HIP000169506;
BIND 24515; 24516; 24801;
DIP NA
MINT NA
HPRD 00150; 00223; 00252; 00628; 00946; 01038; 01121; 01430; 01501; 03150; 03180; 03763; 04091; 05462; 08985; 09004;
IntAct NA
Database links RefSeq NA
UniProt NA
CCDS NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Related H-InvDB links G-integraG-integra ; PPI viewer PPI view ; TACT TACT ;

Glycosylation
GPDB (GlycoProtDB)
GPDB
ID NA
Protein name NA
Organism NA
Length(aa) NA

Subcellular localization information
WoLF PSORT peroxisome;
Target P signal peptide
SOSUI membrane protein
TMHMM membrane protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP) GTOP Last modified : 27-May-2015
Start End PDB_ID E-value Identity Coverage SCOP_ID
26 465 1jv2A4 5e-68 31.6 414/438 b.69.8.1
466 628 1jv2A1 8e-34 25.3 154/160 b.1.15.1
629 786 1jv2A2 1e-21 21.4 131/100 b.1.15.1
793 1004 1jv2A3 6e-38 25.3 182/190 b.1.15.1
Related H-InvDB links GTOP GTOP

Evolutionary information
Relationship Species Accession number MGI Links
Orthology Danio sp. (Zebrafish) BC090458 G-integraG-integra
Orthology Equus sp. (Horse) ENSECAT00000006140 G-integraG-integra
Orthology Mus sp. (Mouse) ENSMUST00000028522 G-integraG-integra
Orthology Oryzias sp. (Medaka) ENSORLT00000018009 G-integraG-integra
Orthology Oryzias sp. (Medaka) ENSORLT00000021756 G-integraG-integra
Orthology Pongo sp. (Orangutan) ENSPPYT00000015026 G-integraG-integra
Orthology Tetraodon sp. (Tetraodon) GSTENT00020949001 G-integraG-integra
Orthology Tetraodon sp. (Tetraodon) GSTENT00029239001 G-integraG-integra
Orthology Tetraodon sp. (Tetraodon) GSTENT00031433001 G-integraG-integra
Orthology Bos sp. (Cow) NM_001109981 G-integraG-integra
Orthology Takifugu sp. (Fugu) SINFRUT00000180156 G-integraG-integra
Orthology Takifugu sp. (Fugu) SINFRUT00000180745 G-integraG-integra
Orthology Gallus sp. (Chicken) X56559 G-integraG-integra
Orthology Rattus sp. (Rat) XM_001059408 G-integraG-integra
Orthology Monodelphis sp. (Opossum) XM_001368083 G-integraG-integra
Orthology Danio sp. (Zebrafish) XM_001922966 G-integraG-integra
Orthology Pan sp. (Chimpanzee) XM_515909 G-integraG-integra
Orthology Canis sp. (Dog) XM_855851 G-integraG-integra
Phylogenetic tree [View by ATV] TNeighbor-joining (phb) 
Related H-InvDB links EvolaEvola dN/dS

Translation polymorphism (SNP) and microsatellite (STR) information

Single Nucleotide Polymorphism (SNP) and indel VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
156..156 G/A rs201418157 + CDS Nonsynonymous[Ala4Thr]
158..158 C/G rs201026395 + CDS Synonymous[Ala4Ala]
165..165 C/T rs76775089 + CDS Synonymous[Leu7Leu]
201..201 C/T rs150472149 + CDS Nonsynonymous[Arg19Trp]
206..206 C/T rs140763977 + CDS Synonymous[Leu20Leu]
294..294 A/G rs138572695 + CDS Nonsynonymous[Met50Val]
347..347 G/A rs143545213 + CDS Synonymous[Pro67Pro]
348..348 C/T rs188528648 + CDS Nonsynonymous[Arg68Cys]
386..386 G/A rs200193154 + CDS Synonymous[Thr80Thr]
404..404 C/T rs200919733 + CDS Synonymous[Cys86Cys]
418..418 G/A rs200823590 + CDS Nonsynonymous[Arg91Gln]
458..458 C/T rs141735531 + CDS Synonymous[Asp104Asp]
574..574 C/T rs199977185 + CDS Nonsynonymous[Thr143Met]
575..575 G/A rs140628012 + CDS Synonymous[Thr143Thr]
612..612 G/A rs200944396 + CDS Nonsynonymous[Val156Ile]
664..664 G/C rs147253357 + CDS Nonsynonymous[Ser173Thr]
905..905 T/G rs200561616 + CDS Synonymous[Pro253Pro]
1068..1068 G/A rs145641588 + CDS Nonsynonymous[Asp308Asn]
1078..1078 G/A rs149809522 + CDS Nonsynonymous[Gly311Asp]
1106^1107 -/GGGGGGG rs150613003 + CDS
1114..1114 T/A rs148547864 + CDS Nonsynonymous[Val323Glu]
1144..1144 T/C rs200187345 + CDS Nonsynonymous[Ile333Thr]
1194..1194 G/T rs201037158 + CDS Nonsynonymous[Ala350Ser]
1197..1197 G/C rs146630825 + CDS Nonsynonymous[Val351Leu]
1245..1245 A/G rs201246910 + CDS Nonsynonymous[Ile367Val]
1284..1284 G/A rs11895564 + CDS Nonsynonymous[Ala380Thr]
1304..1304 T/C rs150310434 + CDS Synonymous[Asp386Asp]
1348..1348 A/G rs200217971 + CDS Nonsynonymous[Tyr401Cys]
1363..1363 A/G rs149501876 + CDS Nonsynonymous[Lys406Arg]
1437..1437 T/C rs1130988 + CDS Nonsynonymous[Tyr431His]
1520..1520 A/G rs138908657 + CDS Synonymous[Ser458Ser]
1578..1578 C/T rs147243269 + CDS Nonsynonymous[Pro478Ser]
1593..1593 C/T rs201826336 + CDS Nonsynonymous[Leu483Phe]
1597..1597 G/A rs200082047 + CDS Nonsynonymous[Arg484His]
1625..1625 T/A rs141416496 + CDS Nonsynonymous[Ser493Arg]
1634..1634 C/G rs200560853 + CDS Nonsynonymous[Cys496Trp]
1663..1663 C/T rs139324320 + CDS Nonsynonymous[Thr506Ile]
1890..1890 A/G rs16860530 + CDS Nonsynonymous[Ile582Val]
1898..1898 C/T rs143857602 + CDS Synonymous[Ala584Ala]
1946..1946 T/C rs113598978 + CDS Synonymous[Leu600Leu]
1996..1996 T/C rs148815652 + CDS Nonsynonymous[Ile617Thr]
2080..2080 G/A rs190444302 + CDS Nonsynonymous[Arg645Gln]
2089..2089 A/C rs200970506 + CDS Nonsynonymous[Asn648Thr]
2114..2114 A/G rs191117279 + CDS Synonymous[Pro656Pro]
2142..2142 C/T rs201384421 + CDS Synonymous[Leu666Leu]
2169..2169 G/A rs13002726 + CDS Nonsynonymous[Glu675Lys]
2219..2219 T/C rs113927986 + CDS Synonymous[Asp691Asp]
2222..2222 C/T rs150954056 + CDS Synonymous[Gly692Gly]
2228..2228 C/T rs2293649 - CDS Synonymous[Asp694Asp]
2255..2255 G/A rs141344340 + CDS Synonymous[Thr703Thr]
2282..2282 A/T rs2293648 + CDS Synonymous[Ala712Ala]
2309..2309 G/T rs200765179 + CDS Nonsynonymous[Glu721Asp]
2315..2315 G/A rs149917878 + CDS Synonymous[Gln723Gln]
2323..2323 G/A rs142894108 + CDS Nonsynonymous[Cys726Tyr]
2363..2363 C/T rs200285874 + CDS Synonymous[Leu739Leu]
2393..2393 C/G rs61748247 + CDS Synonymous[Val749Val]
2442..2442 T/G rs2737085 + CDS Nonsynonymous[Tyr766Asp]
2471..2471 A/T rs142056561 + CDS Synonymous[Thr775Thr]
2539..2539 C/T rs201430068 + CDS Nonsynonymous[Ser798Leu]
2584..2584 C/G rs144265145 + CDS Nonsynonymous[Thr813Arg]
2677..2677 C/T rs200289610 + CDS Nonsynonymous[Thr844Ile]
2684..2684 C/T rs181814375 + CDS Synonymous[Leu846Leu]
2797..2797 A/G rs61757096 + CDS Nonsynonymous[Gln884Arg]
2807..2807 A/G rs140907663 + CDS Nonsynonymous[Ile887Met]
2850..2850 C/T rs199587983 + CDS Nonsynonymous[Arg902Trp]
2874..2874 G/A rs61737182 + CDS Nonsynonymous[Asp910Asn]
2926..2926 A/G rs111722287 + CDS Nonsynonymous[Asn927Ser]
2934..2934 G/A rs10209072 + CDS Nonsynonymous[Val930Met]
2940..2940 G/T rs201502347 + CDS Nonsynonymous[Val932Leu]
2955..2955 A/G rs190209064 + CDS Nonsynonymous[Ile937Val]
2965..2965 C/T rs138874769 + CDS Nonsynonymous[Pro940Leu]
2966..2966 G/A rs34599583 - CDS Synonymous[Pro940Pro]
3004..3004 G/A rs150695902 + CDS Nonsynonymous[Arg953His]
3008..3008 G/C rs61757097 + CDS Synonymous[Ser954Ser]
3019..3019 A/G rs113510867 + CDS Nonsynonymous[Asn958Ser]
3081..3081 A/C rs201738305 + CDS Nonsynonymous[Ile979Leu]
3120..3120 A/G rs188064664 + CDS Nonsynonymous[Asn992Asp]
3152..3152 T/C rs139596061 + CDS Synonymous[Phe1002Phe]
3249..3249 A/G rs145028778 + CDS Nonsynonymous[Ile1035Val]
3278..3278 A/G rs143159110 + CDS Synonymous[Arg1044Arg]
3368..3368 G/A rs16860616 + CDS Synonymous_atSTOP[*1074*]
Microsatellite (Short Tandem Repeat, STR)
LocationVariationStrand
No data available
Related H-InvDB links
VaryGeneVaryGene ;