H-InvDB x AHG DB
Protein view
H-InvDB_9.0 released on May 27, 2015.
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H-Inv protein ID: HIP000025199 Last modified: 27-May-2015
Definition: U5 small nuclear ribonucleoprotein 200 kDa helicase; EC=3.6.4.13; Activating signal cointegrator 1 complex subunit 3-like 1; BRR2 homolog; U5 snRNP-specific 200 kDa protein; U5-200KD;
[Summery][Full]
[Protein Info][Member][Motif] 
provide location, ID and descriptions of functional motifs (InterPro)[Function] 
provide human-curated functional definition, similarity
category and related evidences;  Gene name; 
HUGO gene symbols; GO term; EC number; pathway information (KEGG)[PTM][Subcellular loc.] 
provide subcellular localization prediction by WolfPSORT, Target P, SOSUI, TMHMM and PTS1[Protein Structure][Evolutionary info.] 
provide orthologs relationships, phylogenic trees and sequence alignments[Polymorphism/repeat] 
provide polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Motif information in predicted CDS
ORF

length(2137),orf(79:6489)
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGT
RMGDKAQRTKPQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGI
IYKPKTKETRETYEVLLSFIQAALGDQPRDILCGAADEVLAVLKNEKLRD
KERRKEIDLLLGQTDDTRYHVLVNLGKKITDYGGDKEIQNMDDNIDETYG
VNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTLSANLVASGEL
MSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKM
EADPELSKFLYQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGG
EALAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPAL
KPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLL
LCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE
MVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIG
LSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKR
FQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGL
FLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDL
FADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDIL
QMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLD
QRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQT
YNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKE
SIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFEIVL
NRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPF
ERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEH
LITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTE
LLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGA
PTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDR
LNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINL
FVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAI
TKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPY
LEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSL
CWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEG
RCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQD
AVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIIS
NAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLS
RMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVT
QAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLT
DSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGP
VIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD*
a.a.
length
InterPro Name
length(257), motif(410:666) 257IPR027417P-loop containing nucleoside triphosphate hydrolase [Domain]
length(183), motif(472:654) 183IPR027417P-loop containing nucleoside triphosphate hydrolase [Domain]
length(214), motif(477:690) 214IPR014001Helicase superfamily 1/2, ATP-binding domain [Domain]
length(177), motif(483:659) 177IPR011545DEAD/DEAH box helicase domain [Domain]
length(184), motif(490:673) 184IPR014001Helicase superfamily 1/2, ATP-binding domain [Domain]
length(186), motif(495:680) 186IPR003593AAA+ ATPase domain [Domain]
length(213), motif(676:888) 213IPR027417P-loop containing nucleoside triphosphate hydrolase [Domain]
length(238), motif(684:921) 238IPR001650Helicase, C-terminal [Domain]
length(194), motif(706:899) 194IPR027417P-loop containing nucleoside triphosphate hydrolase [Domain]
length(93), motif(768:860) 93IPR001650Helicase, C-terminal [Domain]
length(80), motif(780:859) 80IPR001650Helicase, C-terminal [Domain]
length(310), motif(978:1287) 310IPR004179Sec63 domain [Domain]
length(306), motif(981:1286) 306IPR004179Sec63 domain [Domain]
length(305), motif(982:1286) 305IPR004179Sec63 domain [Domain]
length(292), motif(1214:1505) 292IPR027417P-loop containing nucleoside triphosphate hydrolase [Domain]
length(204), motif(1323:1526) 204IPR027417P-loop containing nucleoside triphosphate hydrolase [Domain]
length(205), motif(1324:1528) 205IPR014001Helicase superfamily 1/2, ATP-binding domain [Domain]
length(180), motif(1330:1509) 180IPR011545DEAD/DEAH box helicase domain [Domain]
length(176), motif(1337:1512) 176IPR014001Helicase superfamily 1/2, ATP-binding domain [Domain]
length(192), motif(1342:1533) 192IPR003593AAA+ ATPase domain [Domain]
length(210), motif(1514:1723) 210IPR027417P-loop containing nucleoside triphosphate hydrolase [Domain]
length(209), motif(1545:1753) 209IPR001650Helicase, C-terminal [Domain]
length(170), motif(1547:1716) 170IPR027417P-loop containing nucleoside triphosphate hydrolase [Domain]
length(89), motif(1607:1695) 89IPR001650Helicase, C-terminal [Domain]
length(50), motif(1617:1666) 50IPR001650Helicase, C-terminal [Domain]
length(317), motif(1809:2125) 317IPR004179Sec63 domain [Domain]
length(313), motif(1812:2124) 313IPR004179Sec63 domain [Domain]
length(119), motif(2015:2133) 119IPR000008C2 domain [Domain]
length(113), motif(2016:2128) 113IPR014756Immunoglobulin E-set [Domain]