H-InvDB x AHG DB
Protein view
H-InvDB_9.0 released on May 27, 2015.
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H-Inv protein ID: HIP000030803 Last modified: 27-May-2015
Definition: Heterogeneous nuclear ribonucleoprotein R; hnRNP R;
[Summery][Full]
[Protein Info][Member][Motif] 
provide location, ID and descriptions of functional motifs (InterPro)[Function] 
provide human-curated functional definition, similarity
category and related evidences;  Gene name; 
HUGO gene symbols; GO term; EC number; pathway information (KEGG)[PTM][Subcellular loc.] 
provide subcellular localization prediction by WolfPSORT, Target P, SOSUI, TMHMM and PTS1[Protein Structure][Evolutionary info.] 
provide orthologs relationships, phylogenic trees and sequence alignments[Polymorphism/repeat] 
provide polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Protein information
HIP ID HIP000030803
Length 636
Codon Adaptation Index (CAI). 0.728
Database links RefSeq NA
UniProt NA
CCDS
Original transcript information
Representative H-Inv transcript ID Transcript view HIT000030422_03
H-Inv cluster ID Locus view HIX0213791
Predicted CDS 110..2020 ; 636[aa] ; Orientation:+2 ;
Genomic location Chromosome 1
Location 1p36.12
CDS position 23636276-23670803
Strand -
Accession number BC001449.2
CAGE tag ID NA
EST ID NA
Clone Number MGC:2039 IMAGE:3139052
Experimental resources NBRC: NITE Biological Resource Center NBRC      
Length of cDNA 2713[bp] (No. of exon:11)[A:834 T:703 G:688 C:488] ;
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:10236 ;
KEGG GENES KEGG GENES(10236) ;
GeneCard GeneCard NA
etc H-GOLD Human-Gene diversity Of Life-style related Diseases ;
Protein view


Coresponding transcript member (s)
No.1
H-Inv IDTranscript view HIT000030422_03
H-Inv cluster IDLocus view HIX0213791
Accession numberBC001449.2
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionHeterogeneous nuclear ribonucleoprotein R; hnRNP R;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (O43390) [Identity/coverage = 99.528%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help Representative H-Inv IDRepresentative transcript; Splicing isoformSplicing isoform;
Genomic Location G-integra Help Chromosome1
Location1p36.12
CDS position23636276-23670803
Strand-
Gene structure11 exons

Protein function information
H-Inv protein ID HIP000030803
Representative H-Inv transcript ID Transcript view HIT000030422_03
H-Inv cluster ID Locus view HIX0213791
Definition Heterogeneous nuclear ribonucleoprotein R; hnRNP R;
Similarity category Help Identical to known human protein(Category I).
Identical to known human protein (O43390) [Identity/coverage = 99.528%/100.0%] to Homo sapiens (Human). protein.
Gene family/group H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
EC number NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer No. of interaction 24
Interaction partner(s) HIP000007989; HIP000023587; HIP000024702; HIP000024702; HIP000027819; HIP000027819; HIP000030029; HIP000030029; HIP000040680; HIP000057536; HIP000060266; HIP000063360; HIP000071861; HIP000078197; HIP000078197; HIP000079240; HIP000085548; HIP000089618; HIP000092247; HIP000092247; HIP000100089; HIP000166562; HIP000168212; HIP000192131;
BIND NA
DIP 113389E; 131722E; 131894E; 131915E; 132227E; 132267E; 144760E;
MINT MINT-5205872; MINT-65366; MINT-65367; MINT-65368; MINT-7945693; MINT-8076071; MINT-8110455;
HPRD 00535; 00589; 01095; 01809; 02740; 02877; 03144; 03465; 04227; 04340; 04746; 05496; 07601; 14358; 16246;
IntAct NA
Database links RefSeq NA
UniProt
CCDS
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Related H-InvDB links G-integraG-integra ; PPI viewer PPI view ; TACT TACT ;

Glycosylation
GPDB (GlycoProtDB)
GPDB
ID NA
Protein name NA
Organism NA
Length(aa) NA

Subcellular localization information
WoLF PSORT nuclear;
Target P Other
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Evolutionary information
Relationship Species Accession number MGI Links
Orthology Mus sp. (Mouse) AK147043 MGI:3572161 G-integraG-integra
Orthology Danio sp. (Zebrafish) BC056750 G-integraG-integra
Orthology Bos sp. (Cow) BC133299 G-integraG-integra
Orthology Pongo sp. (Orangutan) CR860678 G-integraG-integra
Orthology Canis sp. (Dog) ENSCAFT00000021145 G-integraG-integra
Orthology Macaca sp. (Macaque) ENSMMUT00000015348 G-integraG-integra
Orthology Monodelphis sp. (Opossum) ENSMODT00000020522 G-integraG-integra
Orthology Oryzias sp. (Medaka) ENSORLT00000003124 G-integraG-integra
Orthology Rattus sp. (Rat) ENSRNOT00000016001 G-integraG-integra
Orthology Tetraodon sp. (Tetraodon) GSTENT00032611001 G-integraG-integra
Orthology Takifugu sp. (Fugu) SINFRUT00000157216 G-integraG-integra
Orthology Equus sp. (Horse) XM_001501425 G-integraG-integra
Orthology Pan sp. (Chimpanzee) XM_513191 G-integraG-integra
Phylogenetic tree [View by ATV] TNeighbor-joining (phb) 
Related H-InvDB links EvolaEvola dN/dS

Translation polymorphism (SNP) and microsatellite (STR) information

Single Nucleotide Polymorphism (SNP) and indel VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
222..222 T/C rs145180459 - CDS Nonsynonymous[Leu38Pro]
269..269 T/C rs112936104 - CDS Synonymous[Leu54Leu]
306..306 A/G rs111438915 - CDS Nonsynonymous[Asp66Gly]
520..520 T/C rs183334101 - CDS Synonymous[Thr137Thr]
584..584 G/A rs200996181 - CDS Nonsynonymous[Val159Met]
603..603 C/T rs142602286 - CDS Nonsynonymous[Thr165Met]
649..649 G/A rs140549444 - CDS Synonymous[Glu180Glu]
691..691 A/G rs142539327 - CDS Synonymous[Leu194Leu]
713..713 T/G rs201702161 - CDS Nonsynonymous[Ser202Ala]
742..742 C/T rs146654915 - CDS Synonymous[Ile211Ile]
745..745 C/T rs200469820 - CDS Synonymous[Thr212Thr]
755..755 A/G rs200948069 - CDS Nonsynonymous[Lys216Glu]
869..869 C/A rs77029355 - CDS Nonsynonymous[Pro254Thr]
871..871 G/A rs141121420 - CDS Synonymous[Pro254Pro]
901..901 A/G rs200114895 - CDS Synonymous[Glu264Glu]
914..914 G/A rs200798900 - CDS Nonsynonymous[Val269Ile]
1075..1075 T/C rs202044339 - CDS Synonymous[Asn322Asn]
1219..1219 C/T rs34061540 - CDS Synonymous[Leu370Leu]
1261..1261 T/- rs35216187 - CDS
1354..1354 A/G rs199598063 - CDS Synonymous[Pro415Pro]
1407..1407 C/A rs180897497 - CDS Nonsynonymous[Ala433Glu]
1433..1433 C/T rs200321081 - CDS Nonsynonymous[Pro442Ser]
1451..1451 C/T rs201334404 - CDS Nonsynonymous[Pro448Ser]
1454..1454 A/G rs201330041 - CDS Nonsynonymous[Ile449Val]
1498..1498 C/A rs201164560 - CDS AA-STOP[Tyr463*]
1513..1513 C/T rs202066167 - CDS Synonymous[Tyr468Tyr]
1683..1683 C/T rs12747047 - CDS Nonsynonymous[Pro525Leu]
1684..1684 T/C rs12729576 - CDS Synonymous[Pro525Pro]
1706..1706 T/A rs149942635 - CDS Nonsynonymous[Ser533Thr]
1716..1716 G/T rs200585538 - CDS Nonsynonymous[Gly536Val]
1718..1718 G/- rs35459559 - CDS
1793..1793 C/T rs150851244 - CDS Nonsynonymous[Arg562Cys]
1869..1869 A/G rs200983805 - CDS Nonsynonymous[Lys587Arg]
1891..1891 A/G rs201881520 - CDS Synonymous[Gln594Gln]
1915..1915 C/T rs147254283 - CDS Synonymous[Ile602Ile]
1967..1967 A/C rs662879 - CDS Nonsynonymous[Asn620His]
2013..2013 G/A rs1801929 + CDS AA-STOP[Trp635*]
Microsatellite (Short Tandem Repeat, STR)
LocationVariationStrand
No data available
Related H-InvDB links
VaryGeneVaryGene ;