H-InvDB x AHG DB
Protein view
H-InvDB_9.0 released on May 27, 2015.
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H-Inv protein ID: HIP000033192 Last modified: 27-May-2015
Definition: Histone H3.3;
[Summery][Full]
[Protein Info][Member][Motif] 
provide location, ID and descriptions of functional motifs (InterPro)[Function] 
provide human-curated functional definition, similarity
category and related evidences;  Gene name; 
HUGO gene symbols; GO term; EC number; pathway information (KEGG)[PTM][Subcellular loc.] 
provide subcellular localization prediction by WolfPSORT, Target P, SOSUI, TMHMM and PTS1[Protein Structure][Evolutionary info.] 
provide orthologs relationships, phylogenic trees and sequence alignments[Polymorphism/repeat] 
provide polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Protein information
HIP ID HIP000033192
Length 136
Codon Adaptation Index (CAI). 0.799
Database links RefSeq NA
UniProt P84243 ;
CCDS P84243;
Original transcript information
Representative H-Inv transcript ID Transcript view HIT000054194
H-Inv cluster ID Locus view HIX0014187
Predicted CDS 135..545 ; 136[aa] ; Orientation:+3 ;
Genomic location Chromosome 17
Location 17q25.1
CDS position 73772516-73775860
Strand -
Accession number BC001124.2
CAGE tag ID NA
EST ID NA
Clone Number DKFZp686C2282
Experimental resources NBRC: NITE Biological Resource Center NBRC   HGPD: Human Gene and Protein Database HGPD   Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (H3F3B) ;   Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (H3F3B) ;
Length of cDNA 2878[bp] (No. of exon:4)[A:911 T:802 G:649 C:516] ;
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:3021 ;
KEGG GENES KEGG GENES(3021) ;
GeneCard GeneCard H3F3B ;
etc H-GOLD Human-Gene diversity Of Life-style related Diseases ;
Protein view


Coresponding transcript member (s)
No.1
H-Inv IDTranscript view HIT000030154
H-Inv cluster IDLocus view HIX0014187
Accession numberBC001124.2
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionHistone H3.3;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (P84243) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help NA
Genomic Location G-integra Help Chromosome17
Location17q25.1
CDS position73774331-73775844
Strand-
Gene structure4 exons
No.2
H-Inv IDTranscript view HIT000032877
H-Inv cluster IDLocus view HIX0014187
Accession numberBC006497.2
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionHistone H3.3;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (P84243) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help NA
Genomic Location G-integra Help Chromosome17
Location17q25.1
CDS position73774102-73775844
Strand-
Gene structure4 exons
No.3
H-Inv IDTranscript view HIT000035969
H-Inv cluster IDLocus view HIX0014187
Accession numberBC012813.2
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionHistone H3.3;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (P84243) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help NA
Genomic Location G-integra Help Chromosome17
Location17q25.1
CDS position73774102-73775844
Strand-
Gene structure4 exons
No.4
H-Inv IDTranscript view HIT000038047
H-Inv cluster IDLocus view HIX0014187
Accession numberBC017558.1
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionHistone H3.3;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (P84243) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help NA
Genomic Location G-integra Help Chromosome17
Location17q25.1
CDS position73774104-73775848
Strand-
Gene structure4 exons
No.5
H-Inv IDTranscript view HIT000040748
H-Inv cluster IDLocus view HIX0001642
Accession numberBC029405.1
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionHistone H3.3;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (P84243) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help Splicing isoformSplicing isoform;
Genomic Location G-integra Help Chromosome1
Location1q42.12
CDS position226250426-226259415
Strand+
Gene structure4 exons
No.6
H-Inv IDTranscript view HIT000050043
H-Inv cluster IDLocus view HIX0014187
Accession numberAK130772.1
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionHistone H3.3;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (P84243) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help NA
Genomic Location G-integra Help Chromosome17
Location17q25.1
CDS position73773523-73775860
Strand-
Gene structure4 exons
No.7
H-Inv IDTranscript view HIT000052107
H-Inv cluster IDLocus view HIX0024209
Accession numberBC038989.1
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionHistone H3.3;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (P84243) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help NA
Genomic Location G-integra Help Chromosome2
Location2q31.1
CDS position175584617-175585568
Strand+
Gene structure1 exons
No.8
H-Inv IDTranscript view HIT000054194
H-Inv cluster IDLocus view HIX0014187
Accession numberBX537379.1
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionHistone H3.3;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (P84243) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help Representative H-Inv IDRepresentative transcript; Splicing isoformSplicing isoform;
Genomic Location G-integra Help Chromosome17
Location17q25.1
CDS position73772516-73775860
Strand-
Gene structure4 exons
No.9
H-Inv IDTranscript view HIT000055927
H-Inv cluster IDLocus view HIX0014187
Accession numberBX647280.1
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionHistone H3.3;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (P84243) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help NA
Genomic Location G-integra Help Chromosome17
Location17q25.1
CDS position73773541-73775859
Strand-
Gene structure4 exons
No.10
H-Inv IDTranscript view HIT000074274
H-Inv cluster IDLocus view HIX0014187
Accession numberAF218029.1
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionHistone H3.3;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (P84243) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help NA
Genomic Location G-integra Help Chromosome17
Location17q25.1
CDS position73773522-73775840
Strand-
Gene structure4 exons
No.11
H-Inv IDTranscript view HIT000194111
H-Inv cluster IDLocus view HIX0001642
Accession numberM11353.1
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionHistone H3.3;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (P84243) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help Splicing isoformSplicing isoform;
Genomic Location G-integra Help Chromosome1
Location1q42.12
CDS position226251678-226259702
Strand+
Gene structure3 exons
No.12
H-Inv IDTranscript view HIT000194112
H-Inv cluster IDLocus view HIX0001642
Accession numberM11354.1
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionHistone H3.3;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (P84243) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help Representative H-Inv IDRepresentative transcript; Splicing isoformSplicing isoform;
Genomic Location G-integra Help Chromosome1
Location1q42.12
CDS position226250427-226259702
Strand+
Gene structure4 exons
No.13
H-Inv IDTranscript view HIT000262322
H-Inv cluster IDLocus view HIX0024209
Accession numberBC066901.1
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionHistone H3.3;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (P84243) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help NA
Genomic Location G-integra Help Chromosome2
Location2q31.1
CDS position175584532-175585568
Strand+
Gene structure1 exons
No.14
H-Inv IDTranscript view HIT000262725
H-Inv cluster IDLocus view HIX0024209
Accession numberBC067757.1
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionHistone H3.3;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (P84243) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help Representative H-Inv IDRepresentative transcript;
Genomic Location G-integra Help Chromosome2
Location2q31.1
CDS position175584528-175585568
Strand+
Gene structure1 exons
No.15
H-Inv IDTranscript view HIT000265934
H-Inv cluster IDLocus view HIX0024209
Accession numberBC081560.1
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionHistone H3.3;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (P84243) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help NA
Genomic Location G-integra Help Chromosome2
Location2q31.1
CDS position175584535-175585568
Strand+
Gene structure1 exons
No.16
H-Inv IDTranscript view HIT000335240
H-Inv cluster IDLocus view HIX0001642
Accession numberBC095447.1
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionHistone H3.3;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (P84243) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help NA
Genomic Location G-integra Help Chromosome1
Location1q42.12
CDS position226250426-226259494
Strand+
Gene structure4 exons
No.17
H-Inv IDTranscript view HIT000339105
H-Inv cluster IDLocus view HIX0014187
Accession numberBC108701.1
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionHistone H3.3;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (P84243) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help NA
Genomic Location G-integra Help Chromosome17
Location17q25.1
CDS position73774104-73775823
Strand-
Gene structure4 exons
No.18
H-Inv IDTranscript view HIT000430771
H-Inv cluster IDLocus view HIX0001642
Accession numberAK311905.1
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionHistone H3.3;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (P84243) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help NA
Genomic Location G-integra Help Chromosome1
Location1q42.12
CDS position226250408-226259180
Strand+
Gene structure4 exons

Motif information in predicted CDS
ORF

length(137),orf(135:545)
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA*
a.a.
length
InterPro Name
length(136), motif(1:136) 136IPR000164Histone H3/CENP-A [Family]
length(132), motif(2:133) 132IPR009072Histone-fold [Domain]
length(133), motif(2:134) 133IPR009072Histone-fold [Domain]
length(15), motif(3:17) 15IPR000164Histone H3/CENP-A [Family]
length(7), motif(15:21) 7IPR000164Histone H3/CENP-A [Family]
length(15), motif(17:31) 15IPR000164Histone H3/CENP-A [Family]
length(22), motif(34:55) 22IPR000164Histone H3/CENP-A [Family]
length(103), motif(34:136) 103IPR000164Histone H3/CENP-A [Family]
length(18), motif(58:75) 18IPR000164Histone H3/CENP-A [Family]
length(75), motif(58:132) 75IPR007125Histone core [Domain]
length(9), motif(67:75) 9IPR000164Histone H3/CENP-A [Family]
length(19), motif(80:98) 19IPR000164Histone H3/CENP-A [Family]
length(17), motif(98:114) 17IPR000164Histone H3/CENP-A [Family]
length(22), motif(114:135) 22IPR000164Histone H3/CENP-A [Family]

Protein function information
H-Inv protein ID HIP000033192
Representative H-Inv transcript ID Transcript view HIT000054194
H-Inv cluster ID Locus view HIX0014187
Definition Histone H3.3;
Similarity category Help Identical to known human protein(Category I).
Identical to known human protein (P84243) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene family/group H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
EC number NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer No. of interaction 1
Interaction partner(s) HIP000093951;
BIND 199712; 199713; 199985; 199986; 199987; 295238;
DIP 103287E; 103288E; 103289E; 103290E; 104118E; 177019E; 177020E;
MINT MINT-7297026; MINT-7297041; MINT-7297055; MINT-7297083; MINT-7297101; MINT-7297122; MINT-7297142; MINT-7297159; MINT-7297192; MINT-7297230; MINT-7903394; MINT-7903429; MINT-7903444; MINT-7903461; MINT-7903490; MINT-7903511; MINT-7903524; MINT-7903554; MINT-7903569; MINT-7903594; MINT-7903607; MINT-8088939; MINT-8089021; MINT-8089040; MINT-8089088;
HPRD 00146; 01224; 01818; 02055; 02534; 02559; 02583; 03025; 03245; 03490; 03668; 04078; 04206; 04357; 04424; 04459; 04538; 05021; 05131; 06780; 09417; 10144; 11807; 11876; 12234; 13006; 15100; 16088; 16459; 16460;
IntAct NA
Database links RefSeq NA
UniProt P84243 ;
CCDS P84243;
Gene symbol/name HGNC symbol H3F3B
HGNC aliases NA
HGNC name H3 histone, family 3B (H3.3B);
Related H-InvDB links G-integraG-integra ; PPI viewer PPI view ; TACT TACT ;

Glycosylation
GPDB (GlycoProtDB)
GPDB
ID NA
Protein name NA
Organism NA
Length(aa) NA

Subcellular localization information
WoLF PSORT nuclear;
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP) GTOP Last modified : 27-May-2015
Start End PDB_ID E-value Identity Coverage SCOP_ID
39 136 1aoiA 4e-24 95.9 98/98 a.22.1.1
Related H-InvDB links GTOP GTOP

Evolutionary information
Relationship Species Accession number MGI Links
Orthology Danio sp. (Zebrafish) BC045982 G-integraG-integra
Orthology Rattus sp. (Rat) BC063159 G-integraG-integra
Orthology Bos sp. (Cow) BC103071 G-integraG-integra
Orthology Tetraodon sp. (Tetraodon) CR685092 G-integraG-integra
Orthology Pongo sp. (Orangutan) CR858345 G-integraG-integra
Orthology Mus sp. (Mouse) ENSMUST00000106454 G-integraG-integra
Orthology Oryzias sp. (Medaka) ENSORLT00000010884 G-integraG-integra
Orthology Pan sp. (Chimpanzee) ENSPTRT00000017710 G-integraG-integra
Orthology Takifugu sp. (Fugu) SINFRUT00000151524 G-integraG-integra
Orthology Macaca sp. (Macaque) XM_001099829 G-integraG-integra
Orthology Monodelphis sp. (Opossum) XM_001369353 G-integraG-integra
Orthology Canis sp. (Dog) XM_853711 G-integraG-integra
Orthology Gallus sp. (Chicken) Y00392 G-integraG-integra
Phylogenetic tree [View by ATV] TNeighbor-joining (phb) 
Related H-InvDB links EvolaEvola dN/dS

Translation polymorphism (SNP) and microsatellite (STR) information

Single Nucleotide Polymorphism (SNP) and indel VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
140..140 C/T rs115278451 - CDS Synonymous[Ala2Ala]
170..170 C/T rs188695621 - CDS Synonymous[Thr12Thr]
171..171 G/A rs11547391 + CDS Nonsynonymous[Gly13Ser]
184..184 C/G rs11547395 + CDS Nonsynonymous[Pro17Arg]
199..199 C/G rs11547397 + CDS Nonsynonymous[Ala22Gly]
209..209 C/T rs201602885 - CDS Synonymous[Ala25Ala]
215..215 G/A rs144205696 - CDS Synonymous[Arg27Arg]
233..233 C/T rs61734773 - CDS Synonymous[Thr33Thr]
236..236 C/T rs147330413 - CDS Synonymous[Gly34Gly]
242..242 G/C rs200368963 - CDS Synonymous[Val36Val]
256..256 G/A rs11547396 + CDS Nonsynonymous[Arg41His]
341..341 G/T rs11547388 + CDS Nonsynonymous[Gln69His]
367..367 A/T rs11547392 + CDS Nonsynonymous[Asp78Val]
401..401 C/T rs150028698 - CDS Synonymous[Ala89Ala]
404..404 C/T rs202221480 - CDS Synonymous[Ile90Ile]
434..434 C/T rs139372371 - CDS Synonymous[Tyr100Tyr]
449..449 C/T rs150846998 - CDS Synonymous[Phe105Phe]
533..533 A/G rs143050970 - CDS Synonymous[Gly133Gly]
542..542 T/C rs199993848 - CDS Synonymous[Ala136Ala]
Microsatellite (Short Tandem Repeat, STR)
LocationVariationStrand
No data available
Related H-InvDB links
VaryGeneVaryGene ;