H-InvDB x AHG DB
Protein view
H-InvDB_9.0 released on May 27, 2015.
Search by for Advanced Search
ホーム クイックガイド 検索ナビ BLAST サイトマップ データダウンロード 問い合わせ ヘルプ
H-Inv protein ID: HIP000049855 Last modified: 27-May-2015
Definition: CGG triplet repeat-binding protein 1; CGG-binding protein 1; 20 kDa CGG-binding protein; p20-CGGBP DNA-binding protein;
[Summery][Full]
[Protein Info][Member][Motif] 
provide location, ID and descriptions of functional motifs (InterPro)[Function] 
provide human-curated functional definition, similarity
category and related evidences;  Gene name; 
HUGO gene symbols; GO term; EC number; pathway information (KEGG)[PTM][Subcellular loc.] 
provide subcellular localization prediction by WolfPSORT, Target P, SOSUI, TMHMM and PTS1[Protein Structure][Evolutionary info.] 
provide orthologs relationships, phylogenic trees and sequence alignments[Polymorphism/repeat] 
provide polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Protein information
HIP ID HIP000049855
Length 167
Codon Adaptation Index (CAI). 0.733
Database links RefSeq NA
UniProt Q9UFW8 ;
CCDS Q9UFW8;
Original transcript information
Representative H-Inv transcript ID Transcript view HIT000053852
H-Inv cluster ID Locus view HIX0003480
Predicted CDS 313..816 ; 167[aa] ; Orientation:+1 ;
Genomic location Chromosome 3
Location 3p11.1
CDS position 88101100-88108048
Strand -
Accession number BC052980.1
CAGE tag ID NA
EST ID NA
Clone Number MGC:60069 IMAGE:6012191
Experimental resources NBRC: NITE Biological Resource Center NBRC     Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (CGGBP1) ;   Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (CGGBP1) ;
Length of cDNA 4403[bp] (No. of exon:3)[A:1390 T:1482 G:781 C:750] ;
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:8545 ;
KEGG GENES KEGG GENES(8545) ;
GeneCard GeneCard CGGBP1 ;
etc H-GOLD Human-Gene diversity Of Life-style related Diseases ;
Protein view


Coresponding transcript member (s)
No.1
H-Inv IDTranscript view HIT000053852
H-Inv cluster IDLocus view HIX0003480
Accession numberBC052980.1
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionCGG triplet repeat-binding protein 1; CGG-binding protein 1; 20 kDa CGG-binding protein; p20-CGGBP DNA-binding protein;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (Q9UFW8) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help Representative H-Inv IDRepresentative transcript; Splicing isoformSplicing isoform;
Genomic Location G-integra Help Chromosome3
Location3p11.1
CDS position88101100-88108048
Strand-
Gene structure3 exons
No.2
H-Inv IDTranscript view HIT000097182_03
H-Inv cluster IDLocus view HIX0003480
Accession numberBC042194.2
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionCGG triplet repeat-binding protein 1; CGG-binding protein 1; 20 kDa CGG-binding protein; p20-CGGBP DNA-binding protein;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (Q9UFW8) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help NA
Genomic Location G-integra Help Chromosome3
Location3p11.1
CDS position88101165-88106459
Strand-
Gene structure1 exons
No.3
H-Inv IDTranscript view HIT000243799
H-Inv cluster IDLocus view HIX0003480
Accession numberAJ000258.1
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionCGG triplet repeat-binding protein 1; CGG-binding protein 1; 20 kDa CGG-binding protein; p20-CGGBP DNA-binding protein;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (Q9UFW8) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help NA
Genomic Location G-integra Help Chromosome3
Location3p11.1
CDS position88104564-88107231
Strand-
Gene structure3 exons
No.4
H-Inv IDTranscript view HIT000267704
H-Inv cluster IDLocus view HIX0003480
Accession numberCR456854.1
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionCGG triplet repeat-binding protein 1; CGG-binding protein 1; 20 kDa CGG-binding protein; p20-CGGBP DNA-binding protein;
Similarity category HelpIdentical to known human protein(Category I).
Identical to known human protein (Q9UFW8) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature Help NA
Genomic Location G-integra Help Chromosome3
Location3p11.1
CDS position88104625-88105126
Strand-
Gene structure1 exons

Protein function information
H-Inv protein ID HIP000049855
Representative H-Inv transcript ID Transcript view HIT000053852
H-Inv cluster ID Locus view HIX0003480
Definition CGG triplet repeat-binding protein 1; CGG-binding protein 1; 20 kDa CGG-binding protein; p20-CGGBP DNA-binding protein;
Similarity category Help Identical to known human protein(Category I).
Identical to known human protein (Q9UFW8) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene family/group H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
EC number NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer No. of interaction 3
Interaction partner(s) HIP000033751; HIP000044667; HIP000102937;
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
UniProt Q9UFW8 ;
CCDS Q9UFW8;
Gene symbol/name HGNC symbol CGGBP1
HGNC aliases NA
HGNC name CGG triplet repeat binding protein 1;
Related H-InvDB links G-integraG-integra ; PPI viewer PPI view ; TACT TACT ;

Glycosylation
GPDB (GlycoProtDB)
GPDB
ID NA
Protein name NA
Organism NA
Length(aa) NA

Subcellular localization information
WoLF PSORT mitochondria;
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Twilight zone
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP) GTOP Last modified : 27-May-2015
Start End PDB_ID E-value Identity Coverage SCOP_ID
39 91 2vrdA1 1e-04 17.0 53/100 g.37.1.4
Related H-InvDB links GTOP GTOP

Evolutionary information
Relationship Species Accession number MGI Links
Orthology Mus sp. (Mouse) BC043097 MGI:2146370 G-integraG-integra
Orthology Equus sp. (Horse) ENSECAT00000005235 G-integraG-integra
Orthology Pongo sp. (Orangutan) ENSPPYT00000015859 G-integraG-integra
Orthology Rattus sp. (Rat) XM_001063614 G-integraG-integra
Orthology Macaca sp. (Macaque) XM_001082501 G-integraG-integra
Orthology Gallus sp. (Chicken) XM_001232948 G-integraG-integra
Orthology Monodelphis sp. (Opossum) XM_001363764 G-integraG-integra
Orthology Canis sp. (Dog) XM_535549 G-integraG-integra
Orthology Bos sp. (Cow) XM_611424 G-integraG-integra
Phylogenetic tree [View by ATV] TNeighbor-joining (phb) 
Related H-InvDB links EvolaEvola dN/dS

Translation polymorphism (SNP) and microsatellite (STR) information

Single Nucleotide Polymorphism (SNP) and indel VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
720..720 T/C rs192105333 - CDS Synonymous[Asn136Asn]
759..759 A/G rs200198760 - CDS Synonymous[Ala149Ala]
Microsatellite (Short Tandem Repeat, STR)
LocationVariationStrand
No data available
Related H-InvDB links
VaryGeneVaryGene ;