H-InvDB_9.0 released on May 27, 2015. Search by Keyword H-Inv ID (HIT) H-Inv cluster ID (HIX) H-Inv protein ID (HIP) H-Inv gene family/group (HIF) Accession number Chromosome number Chromosome band Definition* Data source ID --- CCDS ID dbSNP ID (rs number) EC number Ensembl ID EntrezGene ID FR ID FR Accession number GO ID GO name* HGNC gene symbol HGNC gene name* InterPro ID InterPro name* OMIM ID OMIM title* Pathway ID Pathway name* RefSeq (gene) ID RefSeq (protein) ID SCOP ID UniProt for Advanced Search

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H-Inv protein ID:	HIP000085983	Last modified:	27-May-2015
Definition:	Signal recognition particle 9 kDa protein; SRP9;

Select FormatXML fileFlat fileProtein sequence fasta

Protein information HIP ID HIP000085983 Length 86 Codon Adaptation Index (CAI). 0.697 Database links RefSeq NA UniProt P49458 ; CCDS P49458; Original transcript information Representative H-Inv transcript ID HIT000393325 H-Inv cluster ID HIX0001635 Predicted CDS 58..318 ; 86[aa] ; Orientation:+1 ; Genomic location Chromosome 1 Location 1q42.12 CDS position 225965586-225978168 Strand + Accession number BC008443.1 CAGE tag ID NA EST ID NA Clone Number HLS_IMAGE_32257 Experimental resources NBRC     Antibody (SRP9) ;   Catalog (SRP9) ; Length of cDNA 971[bp] (No. of exon:4)[A:302 T:308 G:202 C:159] ; Database links RefSeq NA Ensembl NA Entrez Gene NA KEGG GENES NA GeneCard SRP9 ; etc Human-Gene diversity Of Life-style related Diseases ;

MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFHSQLMRLMVAKEARNVTMETE*

Coresponding transcript member (s)

No.		1
H-Inv ID		HIT000033795
H-Inv cluster ID		HIX0001635
Accession number		BC008443.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding
Definition		Signal recognition particle 9 kDa protein; SRP9;
Similarity category		Identical to known human protein(Category I).
		Identical to known human protein (P49458) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature		NA
Genomic Location	Chromosome	1
	Location	1q42.12
	CDS position	225965531-225978164
	Strand	+
Gene structure		3 exons

No.		2
H-Inv ID		HIT000036999
H-Inv cluster ID		HIX0001635
Accession number		BC015094.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding
Definition		Signal recognition particle 9 kDa protein; SRP9;
Similarity category		Identical to known human protein(Category I).
		Identical to known human protein (P49458) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature		NA
Genomic Location	Chromosome	1
	Location	1q42.12
	CDS position	225965548-225978167
	Strand	+
Gene structure		3 exons

No.		3
H-Inv ID		HIT000039527
H-Inv cluster ID		HIX0001635
Accession number		BC022415.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding
Definition		Signal recognition particle 9 kDa protein; SRP9;
Similarity category		Identical to known human protein(Category I).
		Identical to known human protein (P49458) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature		NA
Genomic Location	Chromosome	1
	Location	1q42.12
	CDS position	225965551-225978161
	Strand	+
Gene structure		3 exons

No.		4
H-Inv ID		HIT000065816
H-Inv cluster ID		HIX0001635
Accession number		AF070649.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding
Definition		Signal recognition particle 9 kDa protein; SRP9;
Similarity category		Identical to known human protein(Category I).
		Identical to known human protein (P49458) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature		NA
Genomic Location	Chromosome	1
	Location	1q42.12
	CDS position	225965536-225978168
	Strand	+
Gene structure		3 exons

No.		5
H-Inv ID		HIT000218579
H-Inv cluster ID		HIX0001635
Accession number		U20998.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding
Definition		Signal recognition particle 9 kDa protein; SRP9;
Similarity category		Identical to known human protein(Category I).
		Identical to known human protein (P49458) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature		Splicing isoform;
Genomic Location	Chromosome	1
	Location	1q42.12
	CDS position	225965539-225978161
	Strand	+
Gene structure		3 exons

No.		6
H-Inv ID		HIT000262377
H-Inv cluster ID		HIX0001635
Accession number		BC066957.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding
Definition		Signal recognition particle 9 kDa protein; SRP9;
Similarity category		Identical to known human protein(Category I).
		Identical to known human protein (P49458) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature		NA
Genomic Location	Chromosome	1
	Location	1q42.12
	CDS position	225965528-225978159
	Strand	+
Gene structure		3 exons

No.		7
H-Inv ID		HIT000393325
H-Inv cluster ID		HIX0001635
Accession number		DQ786272.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding
Definition		Signal recognition particle 9 kDa protein; SRP9;
Similarity category		Identical to known human protein(Category I).
		Identical to known human protein (P49458) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature		Representative transcript; Splicing isoform;
Genomic Location	Chromosome	1
	Location	1q42.12
	CDS position	225965586-225978168
	Strand	+
Gene structure		4 exons

No.		8
H-Inv ID		HIT000422392
H-Inv cluster ID		HIX0001635
Accession number		AK289595.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding
Definition		Signal recognition particle 9 kDa protein; SRP9;
Similarity category		Identical to known human protein(Category I).
		Identical to known human protein (P49458) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Transcript feature		NA
Genomic Location	Chromosome	1
	Location	1q42.12
	CDS position	225965550-225977293
	Strand	+
Gene structure		3 exons

Motif information in predicted CDS

	a.a. length	InterPro	Name
	85	IPR008832	Signal recognition particle, SRP9 subunit [Family]
	85	IPR009018	Signal recognition particle, SRP9/SRP14 subunit [Domain]
	75	IPR009018	Signal recognition particle, SRP9/SRP14 subunit [Domain]

Protein function information

H-Inv protein ID		HIP000085983
Representative H-Inv transcript ID		HIT000393325
H-Inv cluster ID		HIX0001635
Definition		Signal recognition particle 9 kDa protein; SRP9;
Similarity category		Identical to known human protein(Category I).
		Identical to known human protein (P49458) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene family/group	H-Inv gene family/group ID	NA
	Gene family/group name	NA
	Evidence motif (InterPro) ID	NA
EC number		NA
KEGG metabolic pathway		NA
Protein-protein interaction (PPI)	No. of interaction	2
	Interaction partner(s)	HIP000033231; HIP000096070;
	BIND	90144; 90145;
	DIP	11015E; 113899E; 116014E;
	MINT	NA
	HPRD	01818; 02831; 03144; 10064;
	IntAct	NA
Database links	RefSeq	NA
	UniProt	P49458 ;
	CCDS	P49458;
Gene symbol/name	HGNC symbol	SRP9
	HGNC aliases	"signal recognition particle 9kD";
	HGNC name	signal recognition particle 9kDa;
Related H-InvDB links		G-integra ; PPI view ; TACT ;

Glycosylation GPDB (GlycoProtDB) ID NA Protein name NA Organism NA Length(aa) NA

Subcellular localization information WoLF PSORT cytosol; Target P Other SOSUI soluble protein TMHMM soluble protein PTS1 Not targeted Related H-InvDB links LIFEdb;  JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP)

Last modified : 27-May-2015

Start End PDB_ID E-value Identity Coverage SCOP_ID 4 81 1914A1 8e-30 92.3 78/100 d.49.1.1

Related H-InvDB links GTOP

Evolutionary information

Relationship	Species	Accession number	MGI	Links
Orthology	Gallus sp. (Chicken)	AJ721047		G-integra
Orthology	Mus sp. (Mouse)	BC039648	MGI:1350930	G-integra
Orthology	Danio sp. (Zebrafish)	BC049522		G-integra
Orthology	Tetraodon sp. (Tetraodon)	CR680254		G-integra
Orthology	Bos sp. (Cow)	ENSBTAT00000047382		G-integra
Orthology	Equus sp. (Horse)	ENSECAT00000023763		G-integra
Orthology	Macaca sp. (Macaque)	ENSMMUT00000045368		G-integra
Orthology	Pongo sp. (Orangutan)	ENSPPYT00000000188		G-integra
Orthology	Takifugu sp. (Fugu)	SINFRUT00000158938		G-integra
Orthology	Rattus sp. (Rat)	XM_001063287		G-integra
Orthology	Pan sp. (Chimpanzee)	XM_001137987		G-integra
Orthology	Monodelphis sp. (Opossum)	XM_001368151		G-integra
Orthology	Canis sp. (Dog)	XM_849646		G-integra

Phylogenetic tree [View by ATV]	TNeighbor-joining (phb)
Related H-InvDB links	Evola;  dN/dS;

Translation polymorphism (SNP) and microsatellite (STR) information

Single Nucleotide Polymorphism (SNP) and indel Location Variation dbSNP ID Strand CDS/UTR Translation 93..93 C/T rs200191596 + CDS Synonymous[Arg12Arg] 114..114 C/T rs148080629 + CDS Synonymous[Leu19Leu] 150..150 T/C rs142361213 + CDS Synonymous[Tyr31Tyr] 164..164 G/A rs61849056 + CDS Nonsynonymous[Gly36Glu] 174..174 T/C rs143580849 + CDS Synonymous[Cys39Cys] 189..189 T/C rs138611908 + CDS Synonymous[Asp44Asp] 196..196 G/C rs201380978 + CDS Nonsynonymous[Val47Leu] 292..292 C/T rs199511703 + CDS Nonsynonymous[Arg79Cys] 296..296 A/G rs201568819 + CDS Nonsynonymous[Asn80Ser] 306..306 G/A rs149323412 + CDS Nonsynonymous[Met83Ile] Microsatellite (Short Tandem Repeat, STR) Location Variation Strand No data available Related H-InvDB links VaryGene ;