H-InvDB x AHG DB
Protein view
H-InvDB_9.0 released on May 27, 2015.
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H-Inv protein ID: HIP000354713 Last modified: 27-May-2015
Definition: Similar to Interferon regulatory factor 2-binding protein 2; IRF-2-binding protein 2; IRF-2BP2;
[Summery][Full]
[Protein Info][Member][Motif] 
provide location, ID and descriptions of functional motifs (InterPro)[Function] 
provide human-curated functional definition, similarity
category and related evidences;  Gene name; 
HUGO gene symbols; GO term; EC number; pathway information (KEGG)[PTM][Subcellular loc.] 
provide subcellular localization prediction by WolfPSORT, Target P, SOSUI, TMHMM and PTS1[Protein Structure][Evolutionary info.] 
provide orthologs relationships, phylogenic trees and sequence alignments[Polymorphism/repeat] 
provide polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Protein information
HIP ID HIP000354713
Length 264
Codon Adaptation Index (CAI). 0.778
Database links RefSeq NA
UniProt NA
CCDS NA
Original transcript information
Representative H-Inv transcript ID Transcript view HIT000428445
H-Inv cluster ID Locus view HIX0023152
Predicted CDS 3..797 ; 264[aa] ; Orientation:+3 ;
Genomic location Chromosome 1
Location 1q42.3
CDS position 234742203-234743860
Strand -
Accession number AK309579.1
CAGE tag ID NA
EST ID NA
Clone Number KIDNE2013103
Experimental resources NBRC: NITE Biological Resource Center NBRC     Antibody: searching human antibodies at "BIO-kaimono.com" Antibody (IRF2BP2) ;   Catalog: searching experimental product catalogs at "BIO-kaimono.com" Catalog (IRF2BP2) ;
Length of cDNA 1477[bp] (No. of exon:2)[A:382 T:400 G:340 C:355] ;
Database links RefSeq NA
Ensembl NA
Entrez Gene NA
KEGG GENES NA
GeneCard GeneCard IRF2BP2 ;
etc H-GOLD Human-Gene diversity Of Life-style related Diseases ;
Protein view


Coresponding transcript member (s)
No.1
H-Inv IDTranscript view HIT000428445
H-Inv cluster IDLocus view HIX0023152
Accession numberAK309579.1
CAGE tag IDNA
EST IDNA
Coding potential Help Protein coding
DefinitionSimilar to Interferon regulatory factor 2-binding protein 2; IRF-2-binding protein 2; IRF-2BP2;
Similarity category HelpSimilar to known protein(Category II).
Similar to known protein (Q7Z5L9) [Identity/coverage = 97.154%/41.91%] to Homo sapiens (Human). protein.
Transcript feature Help Representative H-Inv IDRepresentative transcript;
Genomic Location G-integra Help Chromosome1
Location1q42.3
CDS position234742203-234743860
Strand-
Gene structure2 exons

Protein function information
H-Inv protein ID HIP000354713
Representative H-Inv transcript ID Transcript view HIT000428445
H-Inv cluster ID Locus view HIX0023152
Definition Similar to Interferon regulatory factor 2-binding protein 2; IRF-2-binding protein 2; IRF-2BP2;
Similarity category Help Similar to known protein(Category II).
Similar to known protein (Q7Z5L9) [Identity/coverage = 97.154%/41.91%] to Homo sapiens (Human). protein.
Gene family/group H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
EC number NA
KEGG metabolic pathway NA
Protein-protein interaction (PPI) PPI viewer No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
UniProt NA
CCDS NA
Gene symbol/name HGNC symbol IRF2BP2
HGNC aliases NA
HGNC name interferon regulatory factor 2 binding protein 2;
Related H-InvDB links G-integraG-integra ; PPI viewer PPI view ; TACT TACT ;

Glycosylation
GPDB (GlycoProtDB)
GPDB
ID NA
Protein name NA
Organism NA
Length(aa) NA

Subcellular localization information
WoLF PSORT nuclear;
Target P Not predicted
SOSUI soluble protein
TMHMM soluble protein
PTS1 Not targeted
Related H-InvDB links LIFEdb LIFEdb; 
JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP) GTOP Last modified : 27-May-2015
Start End PDB_ID E-value Identity Coverage SCOP_ID
106 185 2cs3A1 2e-37 90.0 80/80 g.44.1.3
Related H-InvDB links GTOP GTOP

Translation polymorphism (SNP) and microsatellite (STR) information

Single Nucleotide Polymorphism (SNP) and indel VaryGene
Location Variation dbSNP ID Strand CDS/UTR Translation
8..8 T/C rs73112057 - CDS Synonymous[Cys2Cys]
116..116 A/G rs188834929 - CDS Synonymous[Pro38Pro]
141..141 C/T rs149663387 - CDS Nonsynonymous[Pro47Ser]
152..152 C/T rs1059429 - CDS Synonymous[Asn50Asn]
171..171 C/T rs201012807 - CDS Synonymous[Leu57Leu]
188..188 G/A rs14739 - CDS Synonymous[Glu62Glu]
213..213 A/C rs138385624 - CDS Nonsynonymous[Thr71Pro]
352..352 C/T rs148917444 - CDS Nonsynonymous[Ala117Val]
367..367 A/G rs201835390 - CDS Nonsynonymous[Asn122Ser]
371..371 G/C rs201712832 - CDS Nonsynonymous[Gln123His]
409..409 C/T rs150262546 - CDS Nonsynonymous[Pro136Leu]
423..423 A/G rs146614418 - CDS Nonsynonymous[Met141Val]
443..443 C/T rs7543281 - CDS Synonymous[Gly147Gly]
543..543 C/T rs142062357 - CDS Synonymous[Leu181Leu]
599..599 G/A rs144158289 - CDS Synonymous[Pro199Pro]
719..719 C/A rs199881130 - CDS Synonymous[Val239Val]
759..759 G/A rs200873613 - CDS Nonsynonymous[Ala253Thr]
Microsatellite (Short Tandem Repeat, STR)
LocationVariationStrand
No data available
Related H-InvDB links
VaryGeneVaryGene ;