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H-Inv cluster ID: HIX0001635 Created date: 26-Mar-2013 Last modified: 27-May-2015 Definition: Signal recognition particle 9 kDa protein; SRP9;

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Gene structure

H-Inv cluster ID		HIX0001635
Genomic location	Chromosome	1
	Location	1q42.12
	Position	225965515- 225978168
	Strand	+
Antisense cluster ID(s)		NA
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	Entrez Gene ID:6726;
	KEGG GENES	NA
	GeneCard	SRP9;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Cluster member H-Inv ID(s)		HIT000393325;  HIT000033795;  HIT000036999;  HIT000039527;  HIT000039337;  HIT000024147;  HIT000065816;  HIT000262377;  HIT000218579;  HIT000422392;  HIT000395508;  HIT000262813;  HIT000338371;  HIT000261314;  HIT000089280;
Additional cluster member candidate(s)		NA
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome multiple alignment;  ORF multiple alignment;

 

TOP 1-10 11-15 LAST

Cluster member (s)

Locus member number		1
H-Inv ID		HIT000393325
Accession number		DQ786272.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Signal recognition particle 9 kDa protein; SRP9;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (P49458)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	SRP9
	HGNC aliases	"signal recognition particle 9kD"
	HGNC name	signal recognition particle 9kDa
Transcript feature		Representative transcript;  Splicing isoform
Genomic location	Chromosome	1
	Location	1q42.12
	Position	225965586- 225978168
	Strand	+
Gene structure		4 exons

 

TOP 1-10 11-15 LAST

Locus member number		2
H-Inv ID		HIT000033795
Accession number		BC008443.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Signal recognition particle 9 kDa protein; SRP9;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (P49458)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	SRP9
	HGNC aliases	"signal recognition particle 9kD"
	HGNC name	signal recognition particle 9kDa
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1q42.12
	Position	225965531- 225978164
	Strand	+
Gene structure		3 exons

 

TOP 1-10 11-15 LAST

Locus member number		3
H-Inv ID		HIT000036999
Accession number		BC015094.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Signal recognition particle 9 kDa protein; SRP9;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (P49458)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	SRP9
	HGNC aliases	"signal recognition particle 9kD"
	HGNC name	signal recognition particle 9kDa
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1q42.12
	Position	225965548- 225978167
	Strand	+
Gene structure		3 exons

 

TOP 1-10 11-15 LAST

Locus member number		4
H-Inv ID		HIT000039527
Accession number		BC022415.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Signal recognition particle 9 kDa protein; SRP9;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (P49458)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	SRP9
	HGNC aliases	"signal recognition particle 9kD"
	HGNC name	signal recognition particle 9kDa
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1q42.12
	Position	225965551- 225978161
	Strand	+
Gene structure		3 exons

 

TOP 1-10 11-15 LAST

Locus member number		5
H-Inv ID		HIT000039337
Accession number		BC021995.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Signal recognition particle 9 kDa protein isoform 2.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_003124)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	SRP9
	HGNC aliases	"signal recognition particle 9kD"
	HGNC name	signal recognition particle 9kDa
Transcript feature		Splicing isoform
Genomic location	Chromosome	1
	Location	1q42.12
	Position	225965539- 225978168
	Strand	+
Gene structure		4 exons

 

TOP 1-10 11-15 LAST

Locus member number		6
H-Inv ID		HIT000024147
Accession number		AL050363.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Signal recognition particle 9 kDa protein isoform 2.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_003124)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	SRP9
	HGNC aliases	"signal recognition particle 9kD"
	HGNC name	signal recognition particle 9kDa
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1q42.12
	Position	225965574- 225978168
	Strand	+
Gene structure		3 exons

 

TOP 1-10 11-15 LAST

Locus member number		7
H-Inv ID		HIT000065816
Accession number		AF070649.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Signal recognition particle 9 kDa protein; SRP9;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (P49458)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	SRP9
	HGNC aliases	"signal recognition particle 9kD"
	HGNC name	signal recognition particle 9kDa
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1q42.12
	Position	225965536- 225978168
	Strand	+
Gene structure		3 exons

 

TOP 1-10 11-15 LAST

Locus member number		8
H-Inv ID		HIT000262377
Accession number		BC066957.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Signal recognition particle 9 kDa protein; SRP9;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (P49458)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	SRP9
	HGNC aliases	"signal recognition particle 9kD"
	HGNC name	signal recognition particle 9kDa
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1q42.12
	Position	225965528- 225978159
	Strand	+
Gene structure		3 exons

 

TOP 1-10 11-15 LAST

Locus member number		9
H-Inv ID		HIT000218579
Accession number		U20998.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Signal recognition particle 9 kDa protein; SRP9;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (P49458)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	SRP9
	HGNC aliases	"signal recognition particle 9kD"
	HGNC name	signal recognition particle 9kDa
Transcript feature		Splicing isoform
Genomic location	Chromosome	1
	Location	1q42.12
	Position	225965539- 225978161
	Strand	+
Gene structure		3 exons

 

TOP 1-10 11-15 LAST

Locus member number		10
H-Inv ID		HIT000422392
Accession number		AK289595.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Signal recognition particle 9 kDa protein; SRP9;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (P49458)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	SRP9
	HGNC aliases	"signal recognition particle 9kD"
	HGNC name	signal recognition particle 9kDa
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1q42.12
	Position	225965550- 225977293
	Strand	+
Gene structure		3 exons

 

TOP 1-10 11-15 LAST

Locus member number		11
H-Inv ID		HIT000395508
Accession number		EF488978.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Signal recognition particle 9 kDa protein isoform 2.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_003124)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	SRP9
	HGNC aliases	"signal recognition particle 9kD"
	HGNC name	signal recognition particle 9kDa
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1q42.12
	Position	225965531- 225978164
	Strand	+
Gene structure		4 exons

 

TOP 1-10 11-15 LAST

Locus member number		12
H-Inv ID		HIT000262813
Accession number		BC067845.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Signal recognition particle 9 kDa protein isoform 2.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_003124)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	SRP9
	HGNC aliases	"signal recognition particle 9kD"
	HGNC name	signal recognition particle 9kDa
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1q42.12
	Position	225965580- 225978164
	Strand	+
Gene structure		4 exons

 

TOP 1-10 11-15 LAST

Locus member number		13
H-Inv ID		HIT000338371
Accession number		BC106005.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Signal recognition particle 9 kDa protein isoform 2.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_003124)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	SRP9
	HGNC aliases	"signal recognition particle 9kD"
	HGNC name	signal recognition particle 9kDa
Transcript feature		Splicing isoform
Genomic location	Chromosome	1
	Location	1q42.12
	Position	225965539- 225978166
	Strand	+
Gene structure		3 exons

 

TOP 1-10 11-15 LAST

Locus member number		14
H-Inv ID		HIT000261314
Accession number		BC064351.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Signal recognition particle 9 kDa protein isoform 1.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_001123912)  [Identity/coverage = 88.889%/65.85%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	SRP9
	HGNC aliases	"signal recognition particle 9kD"
	HGNC name	signal recognition particle 9kDa
Transcript feature		Splicing isoform
Genomic location	Chromosome	1
	Location	1q42.12
	Position	225965566- 225978161
	Strand	+
Gene structure		3 exons

 

TOP 1-10 11-15 LAST

Locus member number		15
H-Inv ID		HIT000089280
Accession number		BC017414.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Signal recognition particle 9 kDa protein isoform 2.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_003124)  [Identity/coverage = 100.0%/52.33%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	SRP9
	HGNC aliases	"signal recognition particle 9kD"
	HGNC name	signal recognition particle 9kDa
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1q42.12
	Position	225976942- 225978161
	Strand	+
Gene structure		1 exons

Alternative splicing (AS) information

Pattern of alternative splicing isoforms	3' terminal AS;  Internal AS;
Position of alternative splicing isoforms	Cassette;  Internal acceptor site;  Retained intron;
Alternative splicing isoform H-Inv ID(s)	HIT000218579;  HIT000338371;  HIT000039337;  HIT000261314;  HIT000393325;
Related H-InvDB links	H-DBAS;  G-integra;  cDNA-genome multiple alignment;  ORF multiple alignment;

Gene function information

H-Inv cluster ID		HIX0001635
Representative H-Inv ID		HIT000393325
Accession number		DQ786272.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Signal recognition particle 9 kDa protein; SRP9;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (P49458)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene family/group	H-Inv gene family/group ID	NA
	Gene family/group name	NA
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	SRP9
	HGNC aliases	"signal recognition particle 9kD"
	HGNC name	signal recognition particle 9kDa
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000085983
	No. of interaction	2
	Interaction partner(s)	HIP000033231;  HIP000096070;
	BIND	90144;  90145;
	DIP	11015E;  113899E;  116014E;
	MINT	NA
	HPRD	01818;  02831;  03144;  10064;
	IntAct	NA
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	Entrez Gene ID:6726;
	KEGG GENES	NA
	GeneCard	SRP9;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Related H-InvDB links		G-integra;  PPI view;  H-DBAS;  Gene family;  Similarity search tool;  TACT;