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H-InvDB_9.0 released on May 27, 2015.
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H-Inv cluster ID: HIX0002273 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: U5 small nuclear ribonucleoprotein 200 kDa helicase; EC=3.6.4.13; Activating signal cointegrator 1 complex subunit 3-like 1; BRR2 homolog; U5 snRNP-specific 200 kDa protein; U5-200KD;
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0002273
Genomic location  G-integra Help Chromosome 2
Location 2q11.2
Position 96940074- 96971307
Strand -
Antisense cluster ID(s) NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:23020
KEGG GENES KEGG GENES(23020)
GeneCard GeneCardSNRNP200*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000255549HIT000000513HIT000007665HIT000007114HIT000026906HIT000015538HIT000009936HIT000386675HIT000262102HIT000086850HIT000498089HIT000498287HIT000390685HIT000066663HIT000030395
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-10 11-15 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000255549
Accession number AY572488.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition U5 small nuclear ribonucleoprotein 200 kDa helicase; EC=3.6.4.13; Activating signal cointegrator 1 complex subunit 3-like 1; BRR2 homolog; U5 snRNP-specific 200 kDa protein; U5-200KD;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (O75643)  [Identity/coverage = 99.953%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SNRNP200 
HGNC aliases "activating signal cointegrator 1 complex subunit 3-like 1", "retinitis pigmentosa 33 (autosomal dominant)" 
HGNC name small nuclear ribonucleoprotein 200kDa (U5) 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q11.2
Position 96940470- 96971253
Strand -
Gene structure 45 exons
 
TOP 1-10 11-15 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000000513
Accession number AB018331.2
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to U5 small nuclear ribonucleoprotein 200 kDa helicase; EC=3.6.4.13; Activating signal cointegrator 1 complex subunit 3-like 1; BRR2 homolog; U5 snRNP-specific 200 kDa protein; U5-200KD;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (O75643)  [Identity/coverage = 100.0%/94.85%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SNRNP200 
HGNC aliases "activating signal cointegrator 1 complex subunit 3-like 1", "retinitis pigmentosa 33 (autosomal dominant)" 
HGNC name small nuclear ribonucleoprotein 200kDa (U5) 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q11.2
Position 96940077- 96968947
Strand -
Gene structure 43 exons
 
TOP 1-10 11-15 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000007665
Accession number AK024391.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to U5 small nuclear ribonucleoprotein 200 kDa helicase; EC=3.6.4.13; Activating signal cointegrator 1 complex subunit 3-like 1; BRR2 homolog; U5 snRNP-specific 200 kDa protein; U5-200KD;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (O75643)  [Identity/coverage = 99.786%/87.69%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SNRNP200 
HGNC aliases "activating signal cointegrator 1 complex subunit 3-like 1", "retinitis pigmentosa 33 (autosomal dominant)" 
HGNC name small nuclear ribonucleoprotein 200kDa (U5) 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q11.2
Position 96940475- 96964647
Strand -
Gene structure 39 exons
 
TOP 1-10 11-15 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000007114
Accession number AK023840.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to U5 small nuclear ribonucleoprotein 200 kDa helicase; EC=3.6.4.13; Activating signal cointegrator 1 complex subunit 3-like 1; BRR2 homolog; U5 snRNP-specific 200 kDa protein; U5-200KD;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (O75643)  [Identity/coverage = 99.351%/86.61%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SNRNP200 
HGNC aliases "activating signal cointegrator 1 complex subunit 3-like 1", "retinitis pigmentosa 33 (autosomal dominant)" 
HGNC name small nuclear ribonucleoprotein 200kDa (U5) 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q11.2
Position 96940470- 96964578
Strand -
Gene structure 39 exons
 
TOP 1-10 11-15 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000026906
Accession number AL831994.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to U5 small nuclear ribonucleoprotein 200 kDa helicase; EC=3.6.4.13; Activating signal cointegrator 1 complex subunit 3-like 1; BRR2 homolog; U5 snRNP-specific 200 kDa protein; U5-200KD;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (O75643)  [Identity/coverage = 99.658%/82.02%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SNRNP200 
HGNC aliases "activating signal cointegrator 1 complex subunit 3-like 1", "retinitis pigmentosa 33 (autosomal dominant)" 
HGNC name small nuclear ribonucleoprotein 200kDa (U5) 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q11.2
Position 96940469- 96963425
Strand -
Gene structure 36 exons
 
TOP 1-10 11-15 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000015538
Accession number AK090671.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to U5 small nuclear ribonucleoprotein 200 kDa helicase; EC=3.6.4.13; Activating signal cointegrator 1 complex subunit 3-like 1; BRR2 homolog; U5 snRNP-specific 200 kDa protein; U5-200KD;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (O75643)  [Identity/coverage = 100.0%/26.22%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SNRNP200 
HGNC aliases "activating signal cointegrator 1 complex subunit 3-like 1", "retinitis pigmentosa 33 (autosomal dominant)" 
HGNC name small nuclear ribonucleoprotein 200kDa (U5) 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q11.2
Position 96940470- 96971284
Strand -
Gene structure 15 exons
 
TOP 1-10 11-15 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000009936
Accession number AK026662.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to U5 small nuclear ribonucleoprotein 200 kDa helicase; EC=3.6.4.13; Activating signal cointegrator 1 complex subunit 3-like 1; BRR2 homolog; U5 snRNP-specific 200 kDa protein; U5-200KD;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (O75643)  [Identity/coverage = 99.819%/25.94%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SNRNP200 
HGNC aliases "activating signal cointegrator 1 complex subunit 3-like 1", "retinitis pigmentosa 33 (autosomal dominant)" 
HGNC name small nuclear ribonucleoprotein 200kDa (U5) 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q11.2
Position 96940474- 96949099
Strand -
Gene structure 12 exons
 
TOP 1-10 11-15 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000386675
Accession number BC112891.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to U5 small nuclear ribonucleoprotein 200 kDa helicase; EC=3.6.4.13; Activating signal cointegrator 1 complex subunit 3-like 1; BRR2 homolog; U5 snRNP-specific 200 kDa protein; U5-200KD;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (O75643)  [Identity/coverage = 100.0%/88.34%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SNRNP200 
HGNC aliases "activating signal cointegrator 1 complex subunit 3-like 1", "retinitis pigmentosa 33 (autosomal dominant)" 
HGNC name small nuclear ribonucleoprotein 200kDa (U5) 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q11.2
Position 96940474- 96964687
Strand -
Gene structure 39 exons
 
TOP 1-10 11-15 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000262102
Accession number BC065924.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to U5 small nuclear ribonucleoprotein 200 kDa helicase; EC=3.6.4.13; Activating signal cointegrator 1 complex subunit 3-like 1; BRR2 homolog; U5 snRNP-specific 200 kDa protein; U5-200KD;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (O75643)  [Identity/coverage = 99.89%/85.25%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SNRNP200 
HGNC aliases "activating signal cointegrator 1 complex subunit 3-like 1", "retinitis pigmentosa 33 (autosomal dominant)" 
HGNC name small nuclear ribonucleoprotein 200kDa (U5) 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q11.2
Position 96940474- 96964377
Strand -
Gene structure 38 exons
 
TOP 1-10 11-15 LAST 
Locus member number 10
H-Inv ID Transcript viewHIT000086850
Accession number BC007577.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to U5 small nuclear ribonucleoprotein 200 kDa helicase; EC=3.6.4.13; Activating signal cointegrator 1 complex subunit 3-like 1; BRR2 homolog; U5 snRNP-specific 200 kDa protein; U5-200KD;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (O75643)  [Identity/coverage = 100.0%/61.24%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SNRNP200 
HGNC aliases "activating signal cointegrator 1 complex subunit 3-like 1", "retinitis pigmentosa 33 (autosomal dominant)" 
HGNC name small nuclear ribonucleoprotein 200kDa (U5) 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q11.2
Position 96940474- 96956490
Strand -
Gene structure 27 exons
 
TOP 1-10 11-15 LAST 
Locus member number 11
H-Inv ID Transcript viewHIT000498089
Accession number AK303465.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to U5 small nuclear ribonucleoprotein 200 kDa helicase; EC=3.6.4.13; Activating signal cointegrator 1 complex subunit 3-like 1; BRR2 homolog; U5 snRNP-specific 200 kDa protein; U5-200KD;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (O75643)  [Identity/coverage = 99.846%/30.48%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SNRNP200 
HGNC aliases "activating signal cointegrator 1 complex subunit 3-like 1", "retinitis pigmentosa 33 (autosomal dominant)" 
HGNC name small nuclear ribonucleoprotein 200kDa (U5) 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q11.2
Position 96940755- 96951114
Strand -
Gene structure 17 exons
 
TOP 1-10 11-15 LAST 
Locus member number 12
H-Inv ID Transcript viewHIT000498287
Accession number AK303663.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to U5 small nuclear ribonucleoprotein 200 kDa helicase; EC=3.6.4.13; Activating signal cointegrator 1 complex subunit 3-like 1; BRR2 homolog; U5 snRNP-specific 200 kDa protein; U5-200KD;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (O75643)  [Identity/coverage = 93.333%/37.22%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SNRNP200 
HGNC aliases "activating signal cointegrator 1 complex subunit 3-like 1", "retinitis pigmentosa 33 (autosomal dominant)" 
HGNC name small nuclear ribonucleoprotein 200kDa (U5) 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q11.2
Position 96940538- 96951058
Strand -
Gene structure 16 exons
 
TOP 1-10 11-15 LAST 
Locus member number 13
H-Inv ID Transcript viewHIT000390685
Accession number BC131784.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Putative U5 small nuclear ribonucleoprotein 200 kDa helicase; EC=3.6.4.13;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9VUV9)  [Identity/coverage = 76.471%/3.17%] to Drosophila melanogaster (Fruit fly). protein.
Gene symbol/name HGNC symbol SNRNP200 
HGNC aliases "activating signal cointegrator 1 complex subunit 3-like 1", "retinitis pigmentosa 33 (autosomal dominant)" 
HGNC name small nuclear ribonucleoprotein 200kDa (U5) 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q11.2
Position 96940284- 96971232
Strand -
Gene structure 15 exons
 
TOP 1-10 11-15 LAST 
Locus member number 14
H-Inv ID Transcript viewHIT000066663
Accession number AF085356.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to U5 small nuclear ribonucleoprotein 200 kDa helicase; EC=3.6.4.13; Activating signal cointegrator 1 complex subunit 3-like 1; BRR2 homolog; U5 snRNP-specific 200 kDa protein; U5-200KD;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (O75643)  [Identity/coverage = 96.084%/35.67%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SNRNP200 
HGNC aliases "activating signal cointegrator 1 complex subunit 3-like 1", "retinitis pigmentosa 33 (autosomal dominant)" 
HGNC name small nuclear ribonucleoprotein 200kDa (U5) 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q11.2
Position 96940469- 96950461
Strand -
Gene structure 15 exons
 
TOP 1-10 11-15 LAST 
Locus member number 15
H-Inv ID Transcript viewHIT000030395
Accession number BC001417.2
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to U5 small nuclear ribonucleoprotein 200 kDa helicase; EC=3.6.4.13; Activating signal cointegrator 1 complex subunit 3-like 1; BRR2 homolog; U5 snRNP-specific 200 kDa protein; U5-200KD;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (O75643)  [Identity/coverage = 100.0%/23.13%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SNRNP200 
HGNC aliases "activating signal cointegrator 1 complex subunit 3-like 1", "retinitis pigmentosa 33 (autosomal dominant)" 
HGNC name small nuclear ribonucleoprotein 200kDa (U5) 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q11.2
Position 96940474- 96947651
Strand -
Gene structure 11 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Cassette;  Internal acceptor site;  Mutually exclusive; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000009936Splicing isoformHIT000066663Splicing isoformHIT000015538Splicing isoformHIT000498089Splicing isoformHIT000255549Splicing isoformHIT000390685
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0002273
Representative H-Inv ID Representative H-Inv IDHIT000255549
Accession number AY572488.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition U5 small nuclear ribonucleoprotein 200 kDa helicase; EC=3.6.4.13; Activating signal cointegrator 1 complex subunit 3-like 1; BRR2 homolog; U5 snRNP-specific 200 kDa protein; U5-200KD;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (O75643)  [Identity/coverage = 99.953%/100.0%] to Homo sapiens (Human). protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol SNRNP200 
HGNC aliases "activating signal cointegrator 1 complex subunit 3-like 1", "retinitis pigmentosa 33 (autosomal dominant)" 
HGNC name small nuclear ribonucleoprotein 200kDa (U5) 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000025199
No. of interaction 9
Interaction partner(s) HIP000023960HIP000023960HIP000027883HIP000051075HIP000051643HIP000066993HIP000079240HIP000095919HIP000096070
BIND NA
DIP 112369E;  112498E;  112504E;  113073E;  113525E;  114627E;  115068E;  115196E;  116888E;  117197E;  117499E;  144736E;  63648E;  77484E;  77582E; 
MINT MINT-50348;  MINT-50857;  MINT-5205638;  MINT-6488791;  MINT-7945693;  MINT-7947479; 
HPRD 00535;  00777;  01655;  01818;  02877;  03144;  03184;  04116;  04184;  04340;  04627;  05127;  05442;  05496;  05639;  06295;  06942;  07165;  07341;  07601;  08481;  12106;  14384;  16057;  16246; 
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:23020
KEGG GENES KEGG GENES(23020)
GeneCard GeneCardSNRNP200*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Gene familyGene family;  Similarity Search ToolSimilarity search tool TACTTACT
Gene expression information   H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsB130419;  AGhsB191617; 
Affymetrix
GeneChip
HG-Focus 200058_s_at; 
HG-U133 200058_s_at; 
HG-U133A 200058_s_at; 
HG-U133A_2 200058_s_at; 
HG-U133B 200058_s_at; 
HG-U133_Plus_2 200058_s_at; 
HG-U95 31593_at;  41224_at;  47994_at;  68805_f_at;  80103_at; 
HG-U95A 31593_at;  41224_at; 
HG-U95B 47994_at; 
HG-U95C NA
HG-U95D NA
HG-U95E 68805_f_at;  80103_at; 
HG-U95Av2 NA
HuEx-1_0 2494467;  2565264;  2565265;  2565266;  2565268;  2565269;  2565270;  2565271;  2565274;  2565275;  2565277;  2565279;  2565280;  2565281;  2565284;  2565286;  2565287;  2565288;  2565289;  2565291;  2565293;  2565295;  2565296;  2565297;  2565298;  2565299;  2565300;  2565301;  2565302;  2565304;  2565306;  2565307;  2565308;  2565309;  2565310;  2565312;  2565314;  2565315;  2565316;  2565317;  2565318;  2565319;  2565320;  2565321;  2565323;  2565325;  2565328;  2565329;  2565330;  2565331;  2565332;  2565333;  3731345;  3731347;  3731348;  3731350;  3731351;  3731352;  3731353;  3767056;  3767058;  3767059;  3767060; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P131626; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P131626; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator