H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Inv cluster ID: HIX0002770 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Elongation factor 1-beta; EF-1-beta;
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0002770
Genomic location  G-integra Help Chromosome 2
Location 2q33.3
Position 207024309- 207027653
Strand +
Antisense cluster ID(s) NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:619569;  Entrez Gene ID:1933; 
KEGG GENES KEGG GENES(1933); 
GeneCard GeneCardSNORA41;  GeneCardEEF1B2;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Cluster member H-Inv ID(s) HIT000322412;  HIT000029434;  HIT000032094;  HIT000322403;  HIT000424707;  HIT000262755;  HIT000091739;  HIT000267675;  HIT000099999;  HIT000428962;  HIT000383010;  HIT000101179; 
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 
Mini-G Locus map Locus map

 
TOP 1-10 11-12 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000322412
Accession number X60656.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Elongation factor 1-beta; EF-1-beta;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P24534)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol EEF1B2  SNORA41 
HGNC aliases NA
HGNC name eukaryotic translation elongation factor 1 beta 2  small nucleolar RNA, H/ACA box 41 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q33.3
Position 207024334- 207027652
Strand +
Gene structure 7 exons
 
TOP 1-10 11-12 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000029434
Accession number BC000211.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Elongation factor 1-beta; EF-1-beta;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P24534)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol EEF1B2  SNORA41 
HGNC aliases NA
HGNC name eukaryotic translation elongation factor 1 beta 2  small nucleolar RNA, H/ACA box 41 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q33.3
Position 207024352- 207027652
Strand +
Gene structure 7 exons
 
TOP 1-10 11-12 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000032094
Accession number BC004931.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Elongation factor 1-beta; EF-1-beta;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P24534)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol EEF1B2  SNORA41 
HGNC aliases NA
HGNC name eukaryotic translation elongation factor 1 beta 2  small nucleolar RNA, H/ACA box 41 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q33.3
Position 207024657- 207027652
Strand +
Gene structure 6 exons
 
TOP 1-10 11-12 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000322403
Accession number X60489.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Elongation factor 1-beta; EF-1-beta;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P24534)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol EEF1B2  SNORA41 
HGNC aliases NA
HGNC name eukaryotic translation elongation factor 1 beta 2  small nucleolar RNA, H/ACA box 41 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q33.3
Position 207024469- 207027652
Strand +
Gene structure 6 exons
 
TOP 1-10 11-12 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000424707
Accession number AK291910.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Elongation factor 1-beta; EF-1-beta;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P24534)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol EEF1B2  SNORA41 
HGNC aliases NA
HGNC name eukaryotic translation elongation factor 1 beta 2  small nucleolar RNA, H/ACA box 41 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q33.3
Position 207024620- 207027651
Strand +
Gene structure 6 exons
 
TOP 1-10 11-12 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000262755
Accession number BC067787.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Elongation factor 1-beta; EF-1-beta;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P24534)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol EEF1B2  SNORA41 
HGNC aliases NA
HGNC name eukaryotic translation elongation factor 1 beta 2  small nucleolar RNA, H/ACA box 41 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q33.3
Position 207024621- 207027652
Strand +
Gene structure 6 exons
 
TOP 1-10 11-12 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000091739
Accession number BC029316.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Elongation factor 1-beta; EF-1-beta;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P24534)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol EEF1B2  SNORA41 
HGNC aliases NA
HGNC name eukaryotic translation elongation factor 1 beta 2  small nucleolar RNA, H/ACA box 41 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q33.3
Position 207024642- 207027652
Strand +
Gene structure 6 exons
 
TOP 1-10 11-12 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000267675
Accession number CR456825.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Elongation factor 1-beta; EF-1-beta;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P24534)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol EEF1B2  SNORA41 
HGNC aliases NA
HGNC name eukaryotic translation elongation factor 1 beta 2  small nucleolar RNA, H/ACA box 41 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q33.3
Position 207024704- 207027607
Strand +
Gene structure 6 exons
 
TOP 1-10 11-12 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000099999
Accession number BT007079.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Elongation factor 1-beta; EF-1-beta;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P24534)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol EEF1B2  SNORA41 
HGNC aliases NA
HGNC name eukaryotic translation elongation factor 1 beta 2  small nucleolar RNA, H/ACA box 41 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q33.3
Position 207024704- 207027606
Strand +
Gene structure 6 exons
 
TOP 1-10 11-12 LAST 
Locus member number 10
H-Inv ID Transcript viewHIT000428962
Accession number AK310096.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Elongation factor 1-beta; EF-1-beta;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P24534)  [Identity/coverage = 50.769%/57.78%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol EEF1B2  SNORA41 
HGNC aliases NA
HGNC name eukaryotic translation elongation factor 1 beta 2  small nucleolar RNA, H/ACA box 41 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q33.3
Position 207024620- 207026257
Strand +
Gene structure 3 exons
 
TOP 1-10 11-12 LAST 
Locus member number 11
H-Inv ID Transcript viewHIT000383010
Accession number AJ609464.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical short protein.
Similarity category  Help Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Gene symbol/name HGNC symbol EEF1B2  SNORA41 
HGNC aliases NA
HGNC name eukaryotic translation elongation factor 1 beta 2  small nucleolar RNA, H/ACA box 41 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q33.3
Position 207026952- 207027083
Strand +
Gene structure 1 exons
 
TOP 1-10 11-12 LAST 
Locus member number 12
H-Inv ID Transcript viewHIT000101179
Accession number D28350.1
CAGE tag ID NA
EST ID NA
Coding potential Non-protein-coding; 
Definition Non-protein-coding transcript, unclassifiable transcript.
Similarity category  Help Category: Non-protein coding transcript.
NA
Gene symbol/name HGNC symbol EEF1B2  SNORA41 
HGNC aliases NA
HGNC name eukaryotic translation elongation factor 1 beta 2  small nucleolar RNA, H/ACA box 41 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q33.3
Position 207024620- 207024709
Strand +
Gene structure 1 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Internal acceptor site;  Retained intron; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000424707;  Splicing isoformHIT000322412;  Splicing isoformHIT000428962; 
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0002770
Representative H-Inv ID Representative H-Inv IDHIT000322412
Accession number X60656.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Elongation factor 1-beta; EF-1-beta;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P24534)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol EEF1B2  SNORA41 
HGNC aliases NA
HGNC name eukaryotic translation elongation factor 1 beta 2  small nucleolar RNA, H/ACA box 41 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000056074
No. of interaction 21
Interaction partner(s) HIP000023907;  HIP000023907;  HIP000024420;  HIP000024420;  HIP000027819;  HIP000027819;  HIP000028809;  HIP000028809;  HIP000063214;  HIP000070499;  HIP000070499;  HIP000078400;  HIP000078400;  HIP000079911;  HIP000107319;  HIP000108636;  HIP000108636;  HIP000141605;  HIP000141605;  HIP000194975;  HIP000436145; 
BIND 294913; 
DIP 113269E;  113692E;  114046E;  115200E;  115329E;  115868E;  116503E;  116651E;  116878E;  117292E;  175814E;  180014E; 
MINT MINT-3297494;  MINT-63607;  MINT-64888;  MINT-67499; 
HPRD 00017;  00032;  00277;  00279;  00540;  00827;  00828;  02371;  03042;  03062;  03183;  03465;  04265;  05059;  05442;  05496;  07601;  09113;  10556;  11745;  12421;  14358;  16051;  16246; 
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:619569;  Entrez Gene ID:1933; 
KEGG GENES KEGG GENES(1933); 
GeneCard GeneCardSNORA41;  GeneCardEEF1B2;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Related H-InvDB links G-integraG-integra;  PPI viewerPPI view;  H-DBASH-DBAS;  Gene familyGene family;  Similarity Search ToolSimilarity search tool;  TACTTACT; 
Gene expression information   H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator		 AceGene NA
Affymetrix
GeneChip		 HG-Focus 200705_s_at; 
HG-U133 200705_s_at; 
HG-U133A 200705_s_at; 
HG-U133A_2 200705_s_at; 
HG-U133B NA
HG-U133_Plus_2 200705_s_at; 
HG-U95 35748_at; 
HG-U95A 35748_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2524581;  2524582;  2524586;  2524590;  2524595;  2524599;  2524600;  2596250;  2596252;  2596253;  2596254;  2596256;  2813086;  2860352;  2860353;  2860357;  3073097;  3073098;  3073099;  3073101;  3469812;  3469814;  3469817;  3594254;  3594256;  3972139;  4003082;  4003083;  4003084;  4003085;  4003086; 
HuGeneFL X60489_at; 
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 A_23_P165535;  A_32_P49616; 
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator;