H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Inv cluster ID: HIX0003928 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Transformer-2 protein homolog beta isoform 2.
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0003928
Genomic location  G-integra Help Chromosome 3
Location 3q27.2
Position 185632356- 185655924
Strand -
Antisense cluster ID(s) NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:6434
KEGG GENES KEGG GENES(6434)
GeneCard GeneCardTRA2B*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000023021HIT000029395HIT000029636HIT000032507HIT000045483HIT000221036HIT000220685HIT000495742HIT000434498HIT000306255HIT000329143HIT000427133
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-10 11-12 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000023021
Accession number AK098191.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Transformer-2 protein homolog beta isoform 2.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001230808)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol TRA2B 
HGNC aliases "splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila)" 
HGNC name transformer 2 beta homolog (Drosophila) 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 3
Location 3q27.2
Position 185634537- 185655818
Strand -
Gene structure 9 exons
 
TOP 1-10 11-12 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000029395
Accession number BC000160.2
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Transformer-2 protein homolog beta; TRA-2 beta; TRA2-beta; hTRA2-beta; Splicing factor, arginine/serine-rich 10; Transformer-2 protein homolog B;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P62995)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol TRA2B 
HGNC aliases "splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila)" 
HGNC name transformer 2 beta homolog (Drosophila) 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 3
Location 3q27.2
Position 185635116- 185655791
Strand -
Gene structure 9 exons
 
TOP 1-10 11-12 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000029636
Accession number BC000451.2
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Transformer-2 protein homolog beta; TRA-2 beta; TRA2-beta; hTRA2-beta; Splicing factor, arginine/serine-rich 10; Transformer-2 protein homolog B;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P62995)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol TRA2B 
HGNC aliases "splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila)" 
HGNC name transformer 2 beta homolog (Drosophila) 
Transcript feature NA
Genomic location  G-integra Chromosome 3
Location 3q27.2
Position 185635116- 185655790
Strand -
Gene structure 9 exons
 
TOP 1-10 11-12 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000032507
Accession number BC005898.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Transformer-2 protein homolog beta; TRA-2 beta; TRA2-beta; hTRA2-beta; Splicing factor, arginine/serine-rich 10; Transformer-2 protein homolog B;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P62995)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol TRA2B 
HGNC aliases "splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila)" 
HGNC name transformer 2 beta homolog (Drosophila) 
Transcript feature NA
Genomic location  G-integra Chromosome 3
Location 3q27.2
Position 185635116- 185655775
Strand -
Gene structure 9 exons
 
TOP 1-10 11-12 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000045483
Accession number AK125610.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Transformer-2 protein homolog beta; TRA-2 beta; TRA2-beta; hTRA2-beta; Splicing factor, arginine/serine-rich 10; Transformer-2 protein homolog B;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P62995)  [Identity/coverage = 100.0%/61.46%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol TRA2B 
HGNC aliases "splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila)" 
HGNC name transformer 2 beta homolog (Drosophila) 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 3
Location 3q27.2
Position 185635117- 185643052
Strand -
Gene structure 6 exons
 
TOP 1-10 11-12 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000221036
Accession number U68063.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Transformer-2 protein homolog beta; TRA-2 beta; TRA2-beta; hTRA2-beta; Splicing factor, arginine/serine-rich 10; Transformer-2 protein homolog B;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P62995)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol TRA2B 
HGNC aliases "splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila)" 
HGNC name transformer 2 beta homolog (Drosophila) 
Transcript feature NA
Genomic location  G-integra Chromosome 3
Location 3q27.2
Position 185634536- 185655771
Strand -
Gene structure 9 exons
 
TOP 1-10 11-12 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000220685
Accession number U61267.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Transformer-2 protein homolog beta; TRA-2 beta; TRA2-beta; hTRA2-beta; Splicing factor, arginine/serine-rich 10; Transformer-2 protein homolog B;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P62995)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol TRA2B 
HGNC aliases "splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila)" 
HGNC name transformer 2 beta homolog (Drosophila) 
Transcript feature NA
Genomic location  G-integra Chromosome 3
Location 3q27.2
Position 185634536- 185655756
Strand -
Gene structure 9 exons
 
TOP 1-10 11-12 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000495742
Accession number AK301118.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Transformer-2 protein homolog beta isoform 2.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001230808)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol TRA2B 
HGNC aliases "splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila)" 
HGNC name transformer 2 beta homolog (Drosophila) 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 3
Location 3q27.2
Position 185635308- 185655774
Strand -
Gene structure 8 exons
 
TOP 1-10 11-12 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000434498
Accession number AK315632.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Transformer-2 protein homolog beta; TRA-2 beta; TRA2-beta; hTRA2-beta; Splicing factor, arginine/serine-rich 10; Transformer-2 protein homolog B;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P62995)  [Identity/coverage = 99.653%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol TRA2B 
HGNC aliases "splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila)" 
HGNC name transformer 2 beta homolog (Drosophila) 
Transcript feature NA
Genomic location  G-integra Chromosome 3
Location 3q27.2
Position 185636151- 185655908
Strand -
Gene structure 8 exons
 
TOP 1-10 11-12 LAST 
Locus member number 10
H-Inv ID Transcript viewHIT000306255
Accession number CR749214.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Transformer-2 protein homolog beta isoform 2.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001230808)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol TRA2B 
HGNC aliases "splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila)" 
HGNC name transformer 2 beta homolog (Drosophila) 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 3
Location 3q27.2
Position 185634543- 185646861
Strand -
Gene structure 8 exons
 
TOP 1-10 11-12 LAST 
Locus member number 11
H-Inv ID Transcript viewHIT000329143
Accession number AB209208.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Transformer-2 protein homolog beta; TRA-2 beta; TRA2-beta; hTRA2-beta; Splicing factor, arginine/serine-rich 10; Transformer-2 protein homolog B;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P62995)  [Identity/coverage = 100.0%/95.83%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol TRA2B 
HGNC aliases "splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila)" 
HGNC name transformer 2 beta homolog (Drosophila) 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 3
Location 3q27.2
Position 185635117- 185655208
Strand -
Gene structure 10 exons
 
TOP 1-10 11-12 LAST 
Locus member number 12
H-Inv ID Transcript viewHIT000427133
Accession number AK308267.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Transformer-2 protein homolog beta isoform 2.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001230808)  [Identity/coverage = 99.27%/72.87%] to Homo sapiens protein.
Gene symbol/name HGNC symbol TRA2B 
HGNC aliases "splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila)" 
HGNC name transformer 2 beta homolog (Drosophila) 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 3
Location 3q27.2
Position 185635292- 185655802
Strand -
Gene structure 6 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Cassette;  Internal acceptor site;  Internal donor site; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000329143Splicing isoformHIT000427133Splicing isoformHIT000306255Splicing isoformHIT000029395Splicing isoformHIT000045483Splicing isoformHIT000023021Splicing isoformHIT000495742
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0003928
Representative H-Inv ID Representative H-Inv IDHIT000023021
Accession number AK098191.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Transformer-2 protein homolog beta isoform 2.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001230808)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol TRA2B 
HGNC aliases "splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila)" 
HGNC name transformer 2 beta homolog (Drosophila) 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000096770
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:6434
KEGG GENES KEGG GENES(6434)
GeneCard GeneCardTRA2B*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Gene familyGene family;  Similarity Search ToolSimilarity search tool TACTTACT
Gene expression information   H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsA120105; 
Affymetrix
GeneChip
HG-Focus 200893_at; 
HG-U133 200892_s_at;  200893_at;  210180_s_at; 
HG-U133A 200892_s_at;  200893_at;  210180_s_at; 
HG-U133A_2 200892_s_at;  200893_at;  210180_s_at; 
HG-U133B NA
HG-U133_Plus_2 200892_s_at;  200893_at;  210180_s_at; 
HG-U95 140_s_at; 
HG-U95A 140_s_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2656368;  2656378;  2709077;  2709078;  2709079;  2709081;  2709084;  2709086;  2709087;  2709089;  2709091;  2709092;  2709096;  2709112;  2709113;  2709114;  2709115; 
HuGeneFL U68063_at; 
Agilent Human 1A Oligo Microarray:PGID215 A_23_P212639; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P212639; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator