H-InvDB x AHG DB
Locus view
H-InvDB_9.0 released on May 27, 2015.
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H-Inv cluster ID: HIX0004584 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Protocadherin-23; Cadherin-27; Cadherin-like protein CDHJ; Cadherin-like protein VR8; Protein dachsous homolog 2; Protocadherin PCDHJ;
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0004584
Genomic location  G-integra Help Chromosome 4
Location 4q31.3
Position 155155527- 155412877
Strand -
Antisense cluster ID(s) HIX0205970 overlap at CDSs (all)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:54798
KEGG GENES KEGG GENES(54798)
GeneCard GeneCardDCHS2*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000252106HIT000047577HIT000501655
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-3 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000252106
Accession number AY354497.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Protocadherin-23; Cadherin-27; Cadherin-like protein CDHJ; Cadherin-like protein VR8; Protein dachsous homolog 2; Protocadherin PCDHJ;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q6V1P9)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol DCHS2 
HGNC aliases "cadherin-like 27", "dachsous 2 (Drosophila)" 
HGNC name dachsous cadherin-related 2 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 4
Location 4q31.3
Position 155155688- 155312449
Strand -
Gene structure 25 exons
 
TOP 1-3 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000047577
Accession number AK127704.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Protocadherin-23 isoform 2.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001136024)  [Identity/coverage = 99.552%/97.74%] to Homo sapiens protein.
Gene symbol/name HGNC symbol DCHS2 
HGNC aliases "cadherin-like 27", "dachsous 2 (Drosophila)" 
HGNC name dachsous cadherin-related 2 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 4
Location 4q31.3
Position 155243806- 155412868
Strand -
Gene structure 8 exons
 
TOP 1-3 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000501655
Accession number BC140919.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Protocadherin-23 isoform 2.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001136024)  [Identity/coverage = 99.342%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol DCHS2 
HGNC aliases "cadherin-like 27", "dachsous 2 (Drosophila)" 
HGNC name dachsous cadherin-related 2 
Transcript feature NA
Genomic location  G-integra Chromosome 4
Location 4q31.3
Position 155244207- 155412555
Strand -
Gene structure 8 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Cassette; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000047577Splicing isoformHIT000252106
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0004584
Representative H-Inv ID Representative H-Inv IDHIT000252106
Accession number AY354497.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Protocadherin-23; Cadherin-27; Cadherin-like protein CDHJ; Cadherin-like protein VR8; Protein dachsous homolog 2; Protocadherin PCDHJ;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q6V1P9)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol DCHS2 
HGNC aliases "cadherin-like 27", "dachsous 2 (Drosophila)" 
HGNC name dachsous cadherin-related 2 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000092655
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:54798
KEGG GENES KEGG GENES(54798)
GeneCard GeneCardDCHS2*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Gene familyGene family;  Similarity Search ToolSimilarity search tool TACTTACT
Gene expression information   H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsA221304;  AGhsC150405;  AGhsC180214; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 220373_at;  242764_at; 
HG-U133A 220373_at; 
HG-U133A_2 220373_at; 
HG-U133B 242764_at; 
HG-U133_Plus_2 220373_at;  242764_at; 
HG-U95 61884_at; 
HG-U95A NA
HG-U95B NA
HG-U95C 61884_at; 
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2748474;  2748475;  2748481;  2748492;  2790488;  2790489;  2790490;  2790491;  2790492;  2790493;  2790494;  2790495;  2790496;  2790497;  2790498;  2790499;  2790501;  2790503;  2790504;  2790506;  2790507;  2790508;  2790509;  2790510;  2790511;  2790512;  2790515;  2790516;  2790518;  2790520;  2790521;  2790522;  2790523;  2790524;  2790525;  2790528;  2790532;  2790533;  2790534;  2790536;  2790537; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P144490; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P144490;  A_24_P170569; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator