H-InvDB x AHG DB
Locus view
H-InvDB_9.0 released on May 27, 2015.
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H-Inv cluster ID: HIX0004605 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to H/ACA ribonucleoprotein complex non-core subunit NAF1 isoform b.
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0004605
Genomic location  G-integra Help Chromosome 4
Location 4q32.2
Position 164030329- 164088073
Strand -
Antisense cluster ID(s) NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:92345
KEGG GENES KEGG GENES(92345)
GeneCard GeneCardNAF1*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000427467HIT000033676HIT000022206HIT000045910
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-4 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000427467
Accession number AK308601.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to H/ACA ribonucleoprotein complex non-core subunit NAF1 isoform b.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001122403)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NAF1 
HGNC aliases "nuclear assembly factor 1 homolog (S. cerevisiae)" 
HGNC name nuclear assembly factor 1 ribonucleoprotein 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 4
Location 4q32.2
Position 164047860- 164088042
Strand -
Gene structure 8 exons
 
TOP 1-4 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000033676
Accession number BC008207.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition H/ACA ribonucleoprotein complex non-core subunit NAF1; hNAF1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q96HR8)  [Identity/coverage = 99.798%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NAF1 
HGNC aliases "nuclear assembly factor 1 homolog (S. cerevisiae)" 
HGNC name nuclear assembly factor 1 ribonucleoprotein 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 4
Location 4q32.2
Position 164049824- 164088073
Strand -
Gene structure 8 exons
 
TOP 1-4 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000022206
Accession number AK097352.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to H/ACA ribonucleoprotein complex non-core subunit NAF1 isoform b.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001122403)  [Identity/coverage = 89.504%/88.17%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NAF1 
HGNC aliases "nuclear assembly factor 1 homolog (S. cerevisiae)" 
HGNC name nuclear assembly factor 1 ribonucleoprotein 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 4
Location 4q32.2
Position 164056178- 164087983
Strand -
Gene structure 7 exons
 
TOP 1-4 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000045910
Accession number AK126037.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Gene symbol/name HGNC symbol NAF1 
HGNC aliases "nuclear assembly factor 1 homolog (S. cerevisiae)" 
HGNC name nuclear assembly factor 1 ribonucleoprotein 
Transcript feature NA
Genomic location  G-integra Chromosome 4
Location 4q32.2
Position 164030329- 164033783
Strand -
Gene structure 1 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Cassette; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000022206Splicing isoformHIT000427467Splicing isoformHIT000033676
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0004605
Representative H-Inv ID Representative H-Inv IDHIT000427467
Accession number AK308601.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to H/ACA ribonucleoprotein complex non-core subunit NAF1 isoform b.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001122403)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NAF1 
HGNC aliases "nuclear assembly factor 1 homolog (S. cerevisiae)" 
HGNC name nuclear assembly factor 1 ribonucleoprotein 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000194786
No. of interaction 1
Interaction partner(s) HIP000174003
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:92345
KEGG GENES KEGG GENES(92345)
GeneCard GeneCardNAF1*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Gene familyGene family;  Similarity Search ToolSimilarity search tool TACTTACT