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H-InvDB_8.3 released on March 26, 2013.
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H-Inv cluster ID: HIX0005813 Created date: 26-Mar-2013 Last modified: 26-Mar-2013
Definition: Serine/threonine-protein kinase SRPK1; EC=2.7.11.1; SFRS protein kinase 1; Serine/arginine-rich protein-specific kinase 1; SR-protein-specific kinase 1;
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0005813
Genomic location  G-integra Help Chromosome 6
Location 6p21.31
Position 35800811- 35889119
Strand -
Antisense cluster ID(s) HIX0005812 overlap at CDSs (all)
Database links RefSeq NR_034069
Ensembl ENST00000508473ENST00000361690ENST00000373822ENST00000373821ENST00000423325ENST00000507909ENST00000510290ENST00000346162ENST00000505885ENST00000513367ENST00000512445ENST00000373825ENST00000507292ENST00000502969
Entrez Gene Entrez Gene ID:6732
KEGG GENES KEGG GENES(6732)
GeneCard GeneCardSRPK1*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000052013HIT000057344HIT000057310HIT000024810HIT000425074HIT000494215HIT000431578HIT000247193HIT000217919HIT000272338HIT000271755
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-10 11-11 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000052013
Accession number BC038292.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Serine/threonine-protein kinase SRPK1; EC=2.7.11.1; SFRS protein kinase 1; Serine/arginine-rich protein-specific kinase 1; SR-protein-specific kinase 1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q96SB4)  [Identity/coverage = 99.695%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SRPK1 
HGNC aliases "SFRS protein kinase 1" 
HGNC name SRSF protein kinase 1 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6
Location 6p21.31
Position 35800811- 35888922
Strand -
Gene structure 16 exons
 
TOP 1-10 11-11 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000057344
Accession number BX648697.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Serine/threonine-protein kinase SRPK1; EC=2.7.11.1; SFRS protein kinase 1; Serine/arginine-rich protein-specific kinase 1; SR-protein-specific kinase 1;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q96SB4)  [Identity/coverage = 99.693%/99.39%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SRPK1 
HGNC aliases "SFRS protein kinase 1" 
HGNC name SRSF protein kinase 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6
Location 6p21.31
Position 35800811- 35888818
Strand -
Gene structure 16 exons
 
TOP 1-10 11-11 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000057310
Accession number BX648663.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Serine/threonine-protein kinase SRPK1; EC=2.7.11.1; SFRS protein kinase 1; Serine/arginine-rich protein-specific kinase 1; SR-protein-specific kinase 1;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q96SB4)  [Identity/coverage = 99.693%/99.39%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SRPK1 
HGNC aliases "SFRS protein kinase 1" 
HGNC name SRSF protein kinase 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.31
Position 35800811- 35888817
Strand -
Gene structure 16 exons
 
TOP 1-10 11-11 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000024810
Accession number AL117648.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical short protein.
Similarity category  Help Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.31
Position 35800811- 35801790
Strand -
Gene structure 1 exons
 
TOP 1-10 11-11 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000425074
Accession number AK292277.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Serine/threonine-protein kinase SRPK1; EC=2.7.11.1; SFRS protein kinase 1; Serine/arginine-rich protein-specific kinase 1; SR-protein-specific kinase 1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q96SB4)  [Identity/coverage = 99.695%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SRPK1 
HGNC aliases "SFRS protein kinase 1" 
HGNC name SRSF protein kinase 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.31
Position 35802653- 35888902
Strand -
Gene structure 16 exons
 
TOP 1-10 11-11 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000494215
Accession number AK299591.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Serine/threonine-protein kinase SRPK1; EC=2.7.11.1; SFRS protein kinase 1; Serine/arginine-rich protein-specific kinase 1; SR-protein-specific kinase 1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q96SB4)  [Identity/coverage = 99.847%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SRPK1 
HGNC aliases "SFRS protein kinase 1" 
HGNC name SRSF protein kinase 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6
Location 6p21.31
Position 35802819- 35888917
Strand -
Gene structure 16 exons
 
TOP 1-10 11-11 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000431578
Accession number AK312712.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Serine/threonine-protein kinase SRPK1; EC=2.7.11.1; SFRS protein kinase 1; Serine/arginine-rich protein-specific kinase 1; SR-protein-specific kinase 1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q96SB4)  [Identity/coverage = 99.695%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SRPK1 
HGNC aliases "SFRS protein kinase 1" 
HGNC name SRSF protein kinase 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.31
Position 35803081- 35888849
Strand -
Gene structure 16 exons
 
TOP 1-10 11-11 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000247193
Accession number AJ318054.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Serine/threonine-protein kinase SRPK1; EC=2.7.11.1; SFRS protein kinase 1; Serine/arginine-rich protein-specific kinase 1; SR-protein-specific kinase 1;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q96SB4)  [Identity/coverage = 99.693%/99.39%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SRPK1 
HGNC aliases "SFRS protein kinase 1" 
HGNC name SRSF protein kinase 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6
Location 6p21.31
Position 35800811- 35888842
Strand -
Gene structure 15 exons
 
TOP 1-10 11-11 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000217919
Accession number U09564.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Serine/threonine-protein kinase SRPK1; EC=2.7.11.1; SFRS protein kinase 1; Serine/arginine-rich protein-specific kinase 1; SR-protein-specific kinase 1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q96SB4)  [Identity/coverage = 99.695%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SRPK1 
HGNC aliases "SFRS protein kinase 1" 
HGNC name SRSF protein kinase 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.31
Position 35800811- 35888307
Strand -
Gene structure 15 exons
 
TOP 1-10 11-11 LAST 
Locus member number 10
H-Inv ID Transcript viewHIT000272338
Accession number CR593143.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Serine/threonine-protein kinase SRPK1; EC=2.7.11.1; SFRS protein kinase 1; Serine/arginine-rich protein-specific kinase 1; SR-protein-specific kinase 1;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q96SB4)  [Identity/coverage = 100.0%/99.39%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SRPK1 
HGNC aliases "SFRS protein kinase 1" 
HGNC name SRSF protein kinase 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.31
Position 35802778- 35888307
Strand -
Gene structure 15 exons
 
TOP 1-10 11-11 LAST 
Locus member number 11
H-Inv ID Transcript viewHIT000271755
Accession number CR592560.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical short protein.
Similarity category  Help Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Gene symbol/name HGNC symbol SRPK1 
HGNC aliases "SFRS protein kinase 1" 
HGNC name SRSF protein kinase 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.31
Position 35801037- 35802837
Strand -
Gene structure 1 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Internal acceptor site;  Internal donor site;  Retained intron; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000052013Splicing isoformHIT000057344Splicing isoformHIT000247193Splicing isoformHIT000494215
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0005813
Representative H-Inv ID Representative H-Inv IDHIT000052013
Accession number BC038292.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Serine/threonine-protein kinase SRPK1; EC=2.7.11.1; SFRS protein kinase 1; Serine/arginine-rich protein-specific kinase 1; SR-protein-specific kinase 1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q96SB4)  [Identity/coverage = 99.695%/100.0%] to Homo sapiens (Human). protein.
Gene family/group Gene family H-Inv gene family/group ID HIF0000091
Gene family/group name Putative Immunoglobulin E-set (IPR014756).
Evidence motif (InterPro) ID IPR014756
Gene symbol/name HGNC symbol SRPK1 
HGNC aliases "SFRS protein kinase 1" 
HGNC name SRSF protein kinase 1 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000049955
No. of interaction 30
Interaction partner(s) HIP000021416HIP000026444HIP000033252HIP000041410HIP000049955HIP000051756HIP000063135HIP000067876HIP000076451HIP000083763HIP000086429HIP000086431HIP000086819HIP000088241HIP000096509HIP000097933HIP000098091HIP000098092HIP000100812HIP000104541HIP000105077HIP000107424HIP000107515HIP000108035HIP000108710HIP000110414HIP000110731HIP000141603HIP000176142HIP000255869
BIND NA
DIP 112501E;  114973E;  77525E;  77626E; 
MINT MINT-50794;  MINT-50939;  MINT-7228149;  MINT-7228207;  MINT-7228438;  MINT-7228452;  MINT-7228466;  MINT-7228500;  MINT-8143252;  MINT-8143270; 
HPRD 00536;  00589;  01617;  01688;  01871;  01872;  02401;  02488;  02887;  02888;  02948;  03184;  04205;  04280;  04386;  04530;  04720;  05639;  05895;  06388;  06424;  07341;  09052;  09054;  10064;  10441;  15992;  18043; 
IntAct EBI-1072691;  EBI-1064616;  EBI-1061147;  EBI-1080656;  EBI-3912731;  EBI-3911361;  EBI-2878124;  EBI-539669;  EBI-539666;  EBI-593312;  EBI-593320; 
Database links RefSeq NR_034069
Ensembl ENST00000508473ENST00000361690ENST00000373822ENST00000373821ENST00000423325ENST00000507909ENST00000510290ENST00000346162ENST00000505885ENST00000513367ENST00000512445ENST00000373825ENST00000507292ENST00000502969
Entrez Gene Entrez Gene ID:6732
KEGG GENES KEGG GENES(6732)
GeneCard GeneCardSRPK1*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Putative Immunoglobulin E-set (IPR014756). Similarity Search ToolSimilarity search tool TACTTACT
Gene expression information   H-ANGEL DNAProbeLocator Last modified:26-Mar-2013
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsA211202; 
Affymetrix
GeneChip
HG-Focus 202199_s_at; 
HG-U133 202199_s_at;  202200_s_at; 
HG-U133A 202199_s_at;  202200_s_at; 
HG-U133A_2 202199_s_at;  202200_s_at; 
HG-U133B NA
HG-U133_Plus_2 202199_s_at;  202200_s_at; 
HG-U95 1031_at; 
HG-U95A 1031_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2770719;  2904847;  2904848;  2904849;  2904857;  2951676;  2951677;  2951684;  2951687;  2951695;  2951697;  2951698;  2951700;  2951701;  2951702;  2951703;  2951704;  2951705;  2951707;  2951709;  2951712;  2951714;  2951715;  2951716;  2951723;  2951726;  3793170; 
HuGeneFL U09564_at; 
Agilent Human 1A Oligo Microarray:PGID215 A_23_P19543; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P19543; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:26-Mar-2013
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  108800122550137100143400146850150270153600167250179450271250272370601086603282604519606766607017607085608244608645608710608816610212611185612671
Disease related mutation NA
Co-occurred words and phrases with this gene name in PubMed (LEGENDA) LEGENDA Gene name Entrez Gene ID:(6732); 
Disease Entrez Gene ID:(6732); 
Gene function Entrez Gene ID:(6732); 
Substance Entrez Gene ID:(6732); 
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo ViewerLEGENDALEGENDA