H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Inv cluster ID: HIX0005813 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: SRSF protein kinase 1; EC=2.7.11.1; SFRS protein kinase 1; Serine/arginine-rich protein-specific kinase 1; SR-protein-specific kinase 1;
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0005813
Genomic location  G-integra Help Chromosome 6
Location 6p21.31
Position 35800743- 35889119
Strand -
Antisense cluster ID(s) HIX0005812 overlap at CDSs (all)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:6732
KEGG GENES KEGG GENES(6732)
GeneCard GeneCardSRPK1*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000052013HIT000057344HIT000057310HIT000024810HIT000425074HIT000494215HIT000431578HIT000247193HIT000217919
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-9 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000052013
Accession number BC038292.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition SRSF protein kinase 1; EC=2.7.11.1; SFRS protein kinase 1; Serine/arginine-rich protein-specific kinase 1; SR-protein-specific kinase 1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q96SB4)  [Identity/coverage = 99.847%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SRPK1 
HGNC aliases "SFRS protein kinase 1" 
HGNC name SRSF protein kinase 1 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6
Location 6p21.31
Position 35800811- 35888922
Strand -
Gene structure 16 exons
 
TOP 1-9 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000057344
Accession number BX648697.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to SRSF protein kinase 1; EC=2.7.11.1; SFRS protein kinase 1; Serine/arginine-rich protein-specific kinase 1; SR-protein-specific kinase 1;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q96SB4)  [Identity/coverage = 99.693%/99.39%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SRPK1 
HGNC aliases "SFRS protein kinase 1" 
HGNC name SRSF protein kinase 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6
Location 6p21.31
Position 35800811- 35888818
Strand -
Gene structure 16 exons
 
TOP 1-9 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000057310
Accession number BX648663.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to SRSF protein kinase 1; EC=2.7.11.1; SFRS protein kinase 1; Serine/arginine-rich protein-specific kinase 1; SR-protein-specific kinase 1;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q96SB4)  [Identity/coverage = 99.693%/99.39%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SRPK1 
HGNC aliases "SFRS protein kinase 1" 
HGNC name SRSF protein kinase 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.31
Position 35800811- 35888817
Strand -
Gene structure 16 exons
 
TOP 1-9 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000024810
Accession number AL117648.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical short protein.
Similarity category  Help Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Gene symbol/name HGNC symbol SRPK1 
HGNC aliases "SFRS protein kinase 1" 
HGNC name SRSF protein kinase 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.31
Position 35800811- 35801790
Strand -
Gene structure 1 exons
 
TOP 1-9 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000425074
Accession number AK292277.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition SRSF protein kinase 1; EC=2.7.11.1; SFRS protein kinase 1; Serine/arginine-rich protein-specific kinase 1; SR-protein-specific kinase 1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q96SB4)  [Identity/coverage = 99.847%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SRPK1 
HGNC aliases "SFRS protein kinase 1" 
HGNC name SRSF protein kinase 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.31
Position 35802653- 35888902
Strand -
Gene structure 16 exons
 
TOP 1-9 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000494215
Accession number AK299591.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to SRSF protein kinase 3 isoform 3.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001164232)  [Identity/coverage = 67.729%/94.18%] to Homo sapiens protein.
Gene symbol/name HGNC symbol SRPK1 
HGNC aliases "SFRS protein kinase 1" 
HGNC name SRSF protein kinase 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6
Location 6p21.31
Position 35802819- 35888917
Strand -
Gene structure 16 exons
 
TOP 1-9 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000431578
Accession number AK312712.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition SRSF protein kinase 1; EC=2.7.11.1; SFRS protein kinase 1; Serine/arginine-rich protein-specific kinase 1; SR-protein-specific kinase 1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q96SB4)  [Identity/coverage = 99.847%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SRPK1 
HGNC aliases "SFRS protein kinase 1" 
HGNC name SRSF protein kinase 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.31
Position 35803081- 35888849
Strand -
Gene structure 16 exons
 
TOP 1-9 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000247193
Accession number AJ318054.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to SRSF protein kinase 2; EC=2.7.11.1; SFRS protein kinase 2; Serine/arginine-rich protein-specific kinase 2; SR-protein-specific kinase 2; Contains: SRSF protein kinase 2 N-terminal; Contains: SRSF protein kinase 2 C-terminal;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (O54781)  [Identity/coverage = 65.354%/98.97%] to Mus musculus (Mouse). protein.
Gene symbol/name HGNC symbol SRPK1 
HGNC aliases "SFRS protein kinase 1" 
HGNC name SRSF protein kinase 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6
Location 6p21.31
Position 35800811- 35888842
Strand -
Gene structure 15 exons
 
TOP 1-9 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000217919
Accession number U09564.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition SRSF protein kinase 1; EC=2.7.11.1; SFRS protein kinase 1; Serine/arginine-rich protein-specific kinase 1; SR-protein-specific kinase 1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q96SB4)  [Identity/coverage = 99.695%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SRPK1 
HGNC aliases "SFRS protein kinase 1" 
HGNC name SRSF protein kinase 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6p21.31
Position 35800811- 35888307
Strand -
Gene structure 15 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Internal acceptor site;  Internal donor site;  Retained intron; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000052013Splicing isoformHIT000057344Splicing isoformHIT000247193Splicing isoformHIT000494215
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0005813
Representative H-Inv ID Representative H-Inv IDHIT000052013
Accession number BC038292.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition SRSF protein kinase 1; EC=2.7.11.1; SFRS protein kinase 1; Serine/arginine-rich protein-specific kinase 1; SR-protein-specific kinase 1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q96SB4)  [Identity/coverage = 99.847%/100.0%] to Homo sapiens (Human). protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol SRPK1 
HGNC aliases "SFRS protein kinase 1" 
HGNC name SRSF protein kinase 1 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000049955
No. of interaction 11
Interaction partner(s) HIP000035393HIP000036836HIP000036836HIP000041907HIP000058310HIP000065299HIP000080428HIP000085548HIP000090460HIP000104773HIP000347257
BIND NA
DIP 112501E;  114973E;  77525E;  77626E; 
MINT MINT-50794;  MINT-50939;  MINT-7228149;  MINT-7228207;  MINT-7228438;  MINT-7228452;  MINT-7228466;  MINT-7228500;  MINT-8143252;  MINT-8143270; 
HPRD 00536;  00589;  01617;  01688;  01871;  01872;  02401;  02488;  02887;  02888;  02948;  03184;  04205;  04280;  04386;  04530;  04720;  05639;  05895;  06388;  06424;  07341;  09052;  09054;  10064;  10441;  18043; 
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:6732
KEGG GENES KEGG GENES(6732)
GeneCard GeneCardSRPK1*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Gene familyGene family;  Similarity Search ToolSimilarity search tool TACTTACT
Gene expression information   H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsA211202; 
Affymetrix
GeneChip
HG-Focus 202199_s_at; 
HG-U133 202199_s_at;  202200_s_at; 
HG-U133A 202199_s_at;  202200_s_at; 
HG-U133A_2 202199_s_at;  202200_s_at; 
HG-U133B NA
HG-U133_Plus_2 202199_s_at;  202200_s_at; 
HG-U95 1031_at; 
HG-U95A 1031_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2770719;  2904847;  2904848;  2904849;  2904857;  2951676;  2951677;  2951684;  2951687;  2951695;  2951697;  2951698;  2951700;  2951701;  2951702;  2951703;  2951704;  2951705;  2951707;  2951709;  2951712;  2951714;  2951715;  2951716;  2951723;  2951726;  3793170; 
HuGeneFL U09564_at; 
Agilent Human 1A Oligo Microarray:PGID215 A_23_P19543; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P19543; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator