H-InvDB x AHG DB
Locus view
H-InvDB_9.0 released on May 27, 2015.
Search by for Advanced Search
Home Quick guide Navi BLAST Site map Download Contact us Help
H-Inv cluster ID: HIX0006170 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Transcription cofactor vestigial-like protein 2; Vgl-2; Protein VITO1;
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0006170
Genomic location  G-integra Help Chromosome 6
Location 6q22.1
Position 117586721- 117594728
Strand +
Antisense cluster ID(s) NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:245806
KEGG GENES KEGG GENES(245806)
GeneCard GeneCardVGLL2*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000248910HIT000021733HIT000083957HIT000336225HIT000336226HIT000387838HIT000387883HIT000263468
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-8 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000248910
Accession number AJ578053.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Transcription cofactor vestigial-like protein 2; Vgl-2; Protein VITO1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q8N8G2)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol VGLL2 
HGNC aliases "vestigial like 2 (Drosophila)" 
HGNC name vestigial-like family member 2 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6
Location 6q22.1
Position 117586737- 117594725
Strand +
Gene structure 4 exons
 
TOP 1-8 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000021733
Accession number AK096878.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Transcription cofactor vestigial-like protein 2; Vgl-2; Protein VITO1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q8N8G2)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol VGLL2 
HGNC aliases "vestigial like 2 (Drosophila)" 
HGNC name vestigial-like family member 2 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6q22.1
Position 117586904- 117593832
Strand +
Gene structure 4 exons
 
TOP 1-8 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000083957
Accession number AY056583.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Transcription cofactor vestigial-like protein 2 isoform 2.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_703154)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol VGLL2 
HGNC aliases "vestigial like 2 (Drosophila)" 
HGNC name vestigial-like family member 2 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6q22.1
Position 117586721- 117594728
Strand +
Gene structure 3 exons
 
TOP 1-8 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000336225
Accession number BC100798.2
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Transcription cofactor vestigial-like protein 2 isoform 2.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_703154)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol VGLL2 
HGNC aliases "vestigial like 2 (Drosophila)" 
HGNC name vestigial-like family member 2 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6q22.1
Position 117586754- 117594160
Strand +
Gene structure 3 exons
 
TOP 1-8 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000336226
Accession number BC100799.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Transcription cofactor vestigial-like protein 2 isoform 2.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_703154)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol VGLL2 
HGNC aliases "vestigial like 2 (Drosophila)" 
HGNC name vestigial-like family member 2 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6
Location 6q22.1
Position 117586754- 117594160
Strand +
Gene structure 3 exons
 
TOP 1-8 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000387838
Accession number BC118545.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Transcription cofactor vestigial-like protein 2 isoform 2.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_703154)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol VGLL2 
HGNC aliases "vestigial like 2 (Drosophila)" 
HGNC name vestigial-like family member 2 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6q22.1
Position 117586754- 117594160
Strand +
Gene structure 3 exons
 
TOP 1-8 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000387883
Accession number BC118622.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Transcription cofactor vestigial-like protein 2 isoform 2.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_703154)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol VGLL2 
HGNC aliases "vestigial like 2 (Drosophila)" 
HGNC name vestigial-like family member 2 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6q22.1
Position 117586754- 117594160
Strand +
Gene structure 3 exons
 
TOP 1-8 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000263468
Accession number BC069316.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Transcription cofactor vestigial-like protein 2 isoform 2.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_703154)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol VGLL2 
HGNC aliases "vestigial like 2 (Drosophila)" 
HGNC name vestigial-like family member 2 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6q22.1
Position 117586844- 117593735
Strand +
Gene structure 3 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms Internal AS; 
Position of alternative splicing isoforms Cassette; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000248910Splicing isoformHIT000336226
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0006170
Representative H-Inv ID Representative H-Inv IDHIT000248910
Accession number AJ578053.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Transcription cofactor vestigial-like protein 2; Vgl-2; Protein VITO1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q8N8G2)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol VGLL2 
HGNC aliases "vestigial like 2 (Drosophila)" 
HGNC name vestigial-like family member 2 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000096250
No. of interaction 1
Interaction partner(s) HIP000360727
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:245806
KEGG GENES KEGG GENES(245806)
GeneCard GeneCardVGLL2*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Gene familyGene family;  Similarity Search ToolSimilarity search tool TACTTACT
Gene expression information   H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 236352_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 236352_at; 
HG-U133_Plus_2 236352_at; 
HG-U95 56082_at; 
HG-U95A NA
HG-U95B 56082_at; 
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2922941;  2922942;  2922943;  2922947;  2922951;  2922952;  2922953;  2922954;  2971258; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P410709; 
Whole Human Genome Oligo Microarray:PGID247 A_32_P106376;  A_32_P459849; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator