H-InvDB_9.0 released on May 27, 2015.
Search by
Keyword
H-Inv ID (HIT)
H-Inv cluster ID (HIX)
H-Inv protein ID (HIP)
H-Inv gene family/group (HIF)
Accession number
Chromosome number
Chromosome band
Definition*
Data source ID
---
CCDS ID
dbSNP ID (rs number)
EC number
Ensembl ID
EntrezGene ID
FR ID
FR Accession number
GO ID
GO name*
HGNC gene symbol
HGNC gene name*
InterPro ID
InterPro name*
OMIM ID
OMIM title*
Pathway ID
Pathway name*
RefSeq (gene) ID
RefSeq (protein) ID
SCOP ID
UniProt
for
Advanced Search
Home
Quick guide
Navi
BLAST
Site map
Download
Contact us
Help
H-Inv cluster ID:
HIX0006262
Created date:
26-Mar-2013
Last modified:
27-May-2015
Definition:
Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Select format
Flat file
XML file
Gene structure
H-Inv cluster ID
HIX0006262
Genomic location
Chromosome
6
Location
6q24.1
Position
142468367- 142542085
Strand
+
Antisense cluster ID(s)
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:51534
;
KEGG GENES
KEGG GENES(51534)
;
GeneCard
VTA1
;
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Cluster member H-Inv ID(s)
HIT000032536
;
HIT000039612
;
HIT000032969
;
HIT000050009
;
HIT000002526
;
HIT000025280
;
HIT000002005
;
HIT000075794
;
HIT000064894
;
HIT000247795
;
HIT000268057
;
HIT000071167
;
HIT000083031
;
HIT000496000
;
HIT000088050
;
Additional cluster member candidate(s)
NA
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome multiple alignment
;
ORF multiple alignment
;
TOP
1-10
11-15
LAST
Cluster member (s)
Locus member number
1
H-Inv ID
HIT000032536
Accession number
BC005937.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category
Category: Identical to known human protein(Category I).
Identical to known human protein (
Q9NP79
) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name
HGNC symbol
VTA1
HGNC aliases
"chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)"
HGNC name
vesicle (multivesicular body) trafficking 1
Transcript feature
Representative transcript;
Splicing isoform
Genomic location
Chromosome
6
Location
6q24.1
Position
142468416- 142540738
Strand
+
Gene structure
9 exons
TOP
1-10
11-15
LAST
Locus member number
2
H-Inv ID
HIT000039612
Accession number
BC022536.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category
Category: Identical to known human protein(Category I).
Identical to known human protein (
Q9NP79
) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name
HGNC symbol
VTA1
HGNC aliases
"chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)"
HGNC name
vesicle (multivesicular body) trafficking 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6q24.1
Position
142468400- 142541909
Strand
+
Gene structure
8 exons
TOP
1-10
11-15
LAST
Locus member number
3
H-Inv ID
HIT000032969
Accession number
BC006989.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category
Category: Identical to known human protein(Category I).
Identical to known human protein (
Q9NP79
) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name
HGNC symbol
VTA1
HGNC aliases
"chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)"
HGNC name
vesicle (multivesicular body) trafficking 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6q24.1
Position
142468400- 142540737
Strand
+
Gene structure
8 exons
TOP
1-10
11-15
LAST
Locus member number
4
H-Inv ID
HIT000050009
Accession number
AK130738.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category
Category: Identical to known human protein(Category I).
Identical to known human protein (
Q9NP79
) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name
HGNC symbol
VTA1
HGNC aliases
"chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)"
HGNC name
vesicle (multivesicular body) trafficking 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6q24.1
Position
142468407- 142540739
Strand
+
Gene structure
8 exons
TOP
1-10
11-15
LAST
Locus member number
5
H-Inv ID
HIT000002526
Accession number
AK000051.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category
Category: Identical to known human protein(Category I).
Identical to known human protein (
Q9NP79
) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name
HGNC symbol
VTA1
HGNC aliases
"chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)"
HGNC name
vesicle (multivesicular body) trafficking 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6q24.1
Position
142468410- 142540740
Strand
+
Gene structure
8 exons
TOP
1-10
11-15
LAST
Locus member number
6
H-Inv ID
HIT000025280
Accession number
AL136684.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category
Category: Identical to known human protein(Category I).
Identical to known human protein (
Q9NP79
) [Identity/coverage = 99.674%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name
HGNC symbol
VTA1
HGNC aliases
"chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)"
HGNC name
vesicle (multivesicular body) trafficking 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6q24.1
Position
142468406- 142541913
Strand
+
Gene structure
8 exons
TOP
1-10
11-15
LAST
Locus member number
7
H-Inv ID
HIT000002005
Accession number
AF151062.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Conserved hypothetical protein.
Similarity category
Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Gene symbol/name
HGNC symbol
VTA1
HGNC aliases
"chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)"
HGNC name
vesicle (multivesicular body) trafficking 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6q24.1
Position
142468396- 142540740
Strand
+
Gene structure
8 exons
TOP
1-10
11-15
LAST
Locus member number
8
H-Inv ID
HIT000075794
Accession number
AF271994.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category
Category: Identical to known human protein(Category I).
Identical to known human protein (
Q9NP79
) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name
HGNC symbol
VTA1
HGNC aliases
"chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)"
HGNC name
vesicle (multivesicular body) trafficking 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6q24.1
Position
142468410- 142542084
Strand
+
Gene structure
8 exons
TOP
1-10
11-15
LAST
Locus member number
9
H-Inv ID
HIT000064894
Accession number
AF060225.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
Q9NP79
) [Identity/coverage = 99.674%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name
HGNC symbol
VTA1
HGNC aliases
"chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)"
HGNC name
vesicle (multivesicular body) trafficking 1
Transcript feature
Splicing isoform
Genomic location
Chromosome
6
Location
6q24.1
Position
142468410- 142541000
Strand
+
Gene structure
8 exons
TOP
1-10
11-15
LAST
Locus member number
10
H-Inv ID
HIT000247795
Accession number
AJ420507.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
Q9NP79
) [Identity/coverage = 100.0%/99.67%] to Homo sapiens (Human). protein.
Gene symbol/name
HGNC symbol
VTA1
HGNC aliases
"chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)"
HGNC name
vesicle (multivesicular body) trafficking 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6q24.1
Position
142468427- 142540741
Strand
+
Gene structure
8 exons
TOP
1-10
11-15
LAST
Locus member number
11
H-Inv ID
HIT000268057
Accession number
CR457207.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category
Category: Identical to known human protein(Category I).
Identical to known human protein (
Q9NP79
) [Identity/coverage = 99.674%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name
HGNC symbol
VTA1
HGNC aliases
"chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)"
HGNC name
vesicle (multivesicular body) trafficking 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6q24.1
Position
142468425- 142539776
Strand
+
Gene structure
8 exons
TOP
1-10
11-15
LAST
Locus member number
12
H-Inv ID
HIT000071167
Accession number
AF141341.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
Q9NP79
) [Identity/coverage = 98.885%/87.62%] to Homo sapiens (Human). protein.
Gene symbol/name
HGNC symbol
VTA1
HGNC aliases
"chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)"
HGNC name
vesicle (multivesicular body) trafficking 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6q24.1
Position
142468423- 142539663
Strand
+
Gene structure
8 exons
TOP
1-10
11-15
LAST
Locus member number
13
H-Inv ID
HIT000083031
Accession number
AY007093.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
Q9NP79
) [Identity/coverage = 100.0%/81.43%] to Homo sapiens (Human). protein.
Gene symbol/name
HGNC symbol
VTA1
HGNC aliases
"chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)"
HGNC name
vesicle (multivesicular body) trafficking 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6q24.1
Position
142487423- 142540730
Strand
+
Gene structure
7 exons
TOP
1-10
11-15
LAST
Locus member number
14
H-Inv ID
HIT000496000
Accession number
AK301376.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
Q9NP79
) [Identity/coverage = 84.861%/81.76%] to Homo sapiens (Human). protein.
Gene symbol/name
HGNC symbol
VTA1
HGNC aliases
"chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)"
HGNC name
vesicle (multivesicular body) trafficking 1
Transcript feature
Splicing isoform
Genomic location
Chromosome
6
Location
6q24.1
Position
142468400- 142540388
Strand
+
Gene structure
6 exons
TOP
1-10
11-15
LAST
Locus member number
15
H-Inv ID
HIT000088050
Accession number
BC013217.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Similar to Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category
Category: Similar to known protein(Category II).
Similar to known protein (
Q9NP79
) [Identity/coverage = 100.0%/47.56%] to Homo sapiens (Human). protein.
Gene symbol/name
HGNC symbol
VTA1
HGNC aliases
"chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)"
HGNC name
vesicle (multivesicular body) trafficking 1
Transcript feature
NA
Genomic location
Chromosome
6
Location
6q24.1
Position
142510633- 142540740
Strand
+
Gene structure
4 exons
Alternative splicing (AS) information
Pattern of alternative splicing isoforms
3' terminal AS; Internal AS;
Position of alternative splicing isoforms
Cassette; Retained intron;
Alternative splicing isoform H-Inv ID(s)
HIT000064894
;
HIT000496000
;
HIT000032536
;
Related H-InvDB links
H-DBAS
;
G-integra
;
cDNA-genome multiple alignment
;
ORF multiple alignment
;
Gene function information
H-Inv cluster ID
HIX0006262
Representative H-Inv ID
HIT000032536
Accession number
BC005937.1
CAGE tag ID
NA
EST ID
NA
Coding potential
Protein coding;
Definition
Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category
Category: Identical to known human protein(Category I).
Identical to known human protein (
Q9NP79
) [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene family/group
H-Inv gene family/group ID
NA
Gene family/group name
NA
Evidence motif (InterPro) ID
NA
Gene symbol/name
HGNC symbol
VTA1
HGNC aliases
"chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)"
HGNC name
vesicle (multivesicular body) trafficking 1
Protein-protein interaction (PPI)
H-Inv protein ID
HIP000164030
No. of interaction
24
Interaction partner(s)
HIP000000407
;
HIP000004842
;
HIP000021383
;
HIP000035377
;
HIP000036910
;
HIP000036910
;
HIP000043069
;
HIP000043069
;
HIP000045449
;
HIP000060676
;
HIP000066395
;
HIP000066395
;
HIP000071861
;
HIP000074284
;
HIP000092088
;
HIP000095507
;
HIP000098822
;
HIP000103563
;
HIP000104377
;
HIP000107437
;
HIP000112589
;
HIP000144654
;
HIP000144654
;
HIP000183325
;
BIND
NA
DIP
115492E; 137026E; 137031E;
MINT
MINT-66058; MINT-66288; MINT-66512; MINT-66613; MINT-66633; MINT-66658; MINT-66686; MINT-67258; MINT-67363; MINT-67365; MINT-67386; MINT-67404; MINT-67850;
HPRD
00447; 01326; 01589; 01994; 02281; 02291; 03833; 05375; 05418; 06002; 06921; 11762; 12339; 13248; 13263; 13925; 14368;
IntAct
NA
Database links
RefSeq
NA
Ensembl
NA
Entrez Gene
Entrez Gene ID:51534
;
KEGG GENES
KEGG GENES(51534)
;
GeneCard
VTA1
;
*GeneCards is provided free to academic non-profit institutions.
etc
Human-Gene diversity Of Life-style related Diseases
;
Related H-InvDB links
G-integra
;
PPI view
;
H-DBAS
;
Gene family;
Similarity search tool
;
TACT
;
Gene expression information
Last modified:27-May-2015
Tissue-specific expression
NA
Probe
information
AceGene
AGhsA050824; AGhsA211119;
Affymetrix
GeneChip
HG-Focus
NA
HG-U133
223021_x_at; 224437_s_at;
HG-U133A
NA
HG-U133A_2
NA
HG-U133B
223021_x_at; 224437_s_at;
HG-U133_Plus_2
223021_x_at; 224437_s_at;
HG-U95
51786_at; 65802_f_at; 65803_s_at; 65804_r_at;
HG-U95A
NA
HG-U95B
NA
HG-U95C
51786_at; 65802_f_at; 65803_s_at; 65804_r_at;
HG-U95D
NA
HG-U95E
NA
HG-U95Av2
NA
HuEx-1_0
2928399; 2928400; 2928402; 2928403; 2928404; 2928412; 2928413; 2928415; 2928425; 2928426; 2928429; 2928430; 2928431;
HuGeneFL
NA
Agilent
Human 1A Oligo Microarray:PGID215
A_23_P42368;
Whole Human Genome Oligo Microarray:PGID247
A_23_P42368;
Related H-InvDB links
H-ANGEL
;
DNAProbeLocator
;