H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Inv cluster ID: HIX0006262 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0006262
Genomic location  G-integra Help Chromosome 6
Location 6q24.1
Position 142468367- 142542085
Strand +
Antisense cluster ID(s) NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:51534
KEGG GENES KEGG GENES(51534)
GeneCard GeneCardVTA1*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000032536HIT000039612HIT000032969HIT000050009HIT000002526HIT000025280HIT000002005HIT000075794HIT000064894HIT000247795HIT000268057HIT000071167HIT000083031HIT000496000HIT000088050
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-10 11-15 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000032536
Accession number BC005937.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q9NP79)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol VTA1 
HGNC aliases "chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)" 
HGNC name vesicle (multivesicular body) trafficking 1 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6
Location 6q24.1
Position 142468416- 142540738
Strand +
Gene structure 9 exons
 
TOP 1-10 11-15 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000039612
Accession number BC022536.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q9NP79)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol VTA1 
HGNC aliases "chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)" 
HGNC name vesicle (multivesicular body) trafficking 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6q24.1
Position 142468400- 142541909
Strand +
Gene structure 8 exons
 
TOP 1-10 11-15 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000032969
Accession number BC006989.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q9NP79)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol VTA1 
HGNC aliases "chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)" 
HGNC name vesicle (multivesicular body) trafficking 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6q24.1
Position 142468400- 142540737
Strand +
Gene structure 8 exons
 
TOP 1-10 11-15 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000050009
Accession number AK130738.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q9NP79)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol VTA1 
HGNC aliases "chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)" 
HGNC name vesicle (multivesicular body) trafficking 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6q24.1
Position 142468407- 142540739
Strand +
Gene structure 8 exons
 
TOP 1-10 11-15 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000002526
Accession number AK000051.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q9NP79)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol VTA1 
HGNC aliases "chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)" 
HGNC name vesicle (multivesicular body) trafficking 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6q24.1
Position 142468410- 142540740
Strand +
Gene structure 8 exons
 
TOP 1-10 11-15 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000025280
Accession number AL136684.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q9NP79)  [Identity/coverage = 99.674%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol VTA1 
HGNC aliases "chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)" 
HGNC name vesicle (multivesicular body) trafficking 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6q24.1
Position 142468406- 142541913
Strand +
Gene structure 8 exons
 
TOP 1-10 11-15 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000002005
Accession number AF151062.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Gene symbol/name HGNC symbol VTA1 
HGNC aliases "chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)" 
HGNC name vesicle (multivesicular body) trafficking 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6q24.1
Position 142468396- 142540740
Strand +
Gene structure 8 exons
 
TOP 1-10 11-15 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000075794
Accession number AF271994.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q9NP79)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol VTA1 
HGNC aliases "chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)" 
HGNC name vesicle (multivesicular body) trafficking 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6q24.1
Position 142468410- 142542084
Strand +
Gene structure 8 exons
 
TOP 1-10 11-15 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000064894
Accession number AF060225.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9NP79)  [Identity/coverage = 99.674%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol VTA1 
HGNC aliases "chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)" 
HGNC name vesicle (multivesicular body) trafficking 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6
Location 6q24.1
Position 142468410- 142541000
Strand +
Gene structure 8 exons
 
TOP 1-10 11-15 LAST 
Locus member number 10
H-Inv ID Transcript viewHIT000247795
Accession number AJ420507.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9NP79)  [Identity/coverage = 100.0%/99.67%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol VTA1 
HGNC aliases "chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)" 
HGNC name vesicle (multivesicular body) trafficking 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6q24.1
Position 142468427- 142540741
Strand +
Gene structure 8 exons
 
TOP 1-10 11-15 LAST 
Locus member number 11
H-Inv ID Transcript viewHIT000268057
Accession number CR457207.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q9NP79)  [Identity/coverage = 99.674%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol VTA1 
HGNC aliases "chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)" 
HGNC name vesicle (multivesicular body) trafficking 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6q24.1
Position 142468425- 142539776
Strand +
Gene structure 8 exons
 
TOP 1-10 11-15 LAST 
Locus member number 12
H-Inv ID Transcript viewHIT000071167
Accession number AF141341.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9NP79)  [Identity/coverage = 98.885%/87.62%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol VTA1 
HGNC aliases "chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)" 
HGNC name vesicle (multivesicular body) trafficking 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6q24.1
Position 142468423- 142539663
Strand +
Gene structure 8 exons
 
TOP 1-10 11-15 LAST 
Locus member number 13
H-Inv ID Transcript viewHIT000083031
Accession number AY007093.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9NP79)  [Identity/coverage = 100.0%/81.43%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol VTA1 
HGNC aliases "chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)" 
HGNC name vesicle (multivesicular body) trafficking 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6q24.1
Position 142487423- 142540730
Strand +
Gene structure 7 exons
 
TOP 1-10 11-15 LAST 
Locus member number 14
H-Inv ID Transcript viewHIT000496000
Accession number AK301376.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9NP79)  [Identity/coverage = 84.861%/81.76%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol VTA1 
HGNC aliases "chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)" 
HGNC name vesicle (multivesicular body) trafficking 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6
Location 6q24.1
Position 142468400- 142540388
Strand +
Gene structure 6 exons
 
TOP 1-10 11-15 LAST 
Locus member number 15
H-Inv ID Transcript viewHIT000088050
Accession number BC013217.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9NP79)  [Identity/coverage = 100.0%/47.56%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol VTA1 
HGNC aliases "chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)" 
HGNC name vesicle (multivesicular body) trafficking 1 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6q24.1
Position 142510633- 142540740
Strand +
Gene structure 4 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Cassette;  Retained intron; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000064894Splicing isoformHIT000496000Splicing isoformHIT000032536
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0006262
Representative H-Inv ID Representative H-Inv IDHIT000032536
Accession number BC005937.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Vacuolar protein sorting-associated protein VTA1 homolog; Dopamine-responsive gene 1 protein; DRG-1; LYST-interacting protein 5; LIP5; SKD1-binding protein 1; SBP1;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q9NP79)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol VTA1 
HGNC aliases "chromosome 6 open reading frame 55", "Vps20-associated 1 homolog (S. cerevisiae)" 
HGNC name vesicle (multivesicular body) trafficking 1 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000164030
No. of interaction 24
Interaction partner(s) HIP000000407HIP000004842HIP000021383HIP000035377HIP000036910HIP000036910HIP000043069HIP000043069HIP000045449HIP000060676HIP000066395HIP000066395HIP000071861HIP000074284HIP000092088HIP000095507HIP000098822HIP000103563HIP000104377HIP000107437HIP000112589HIP000144654HIP000144654HIP000183325
BIND NA
DIP 115492E;  137026E;  137031E; 
MINT MINT-66058;  MINT-66288;  MINT-66512;  MINT-66613;  MINT-66633;  MINT-66658;  MINT-66686;  MINT-67258;  MINT-67363;  MINT-67365;  MINT-67386;  MINT-67404;  MINT-67850; 
HPRD 00447;  01326;  01589;  01994;  02281;  02291;  03833;  05375;  05418;  06002;  06921;  11762;  12339;  13248;  13263;  13925;  14368; 
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:51534
KEGG GENES KEGG GENES(51534)
GeneCard GeneCardVTA1*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Gene familyGene family;  Similarity Search ToolSimilarity search tool TACTTACT
Gene expression information   H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsA050824;  AGhsA211119; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 223021_x_at;  224437_s_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 223021_x_at;  224437_s_at; 
HG-U133_Plus_2 223021_x_at;  224437_s_at; 
HG-U95 51786_at;  65802_f_at;  65803_s_at;  65804_r_at; 
HG-U95A NA
HG-U95B NA
HG-U95C 51786_at;  65802_f_at;  65803_s_at;  65804_r_at; 
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2928399;  2928400;  2928402;  2928403;  2928404;  2928412;  2928413;  2928415;  2928425;  2928426;  2928429;  2928430;  2928431; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P42368; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P42368; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator