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H-Inv cluster ID: HIX0008131 Created date: 26-Mar-2013 Last modified: 27-May-2015 Definition: Heterogeneous nuclear ribonucleoprotein K; hnRNP K; Transformation up-regulated nuclear protein; TUNP;

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Gene structure

H-Inv cluster ID		HIX0008131
Genomic location	Chromosome	9
	Location	9q21.32
	Position	86582998- 86595569
	Strand	-
Antisense cluster ID(s)		HIX0170141	overlap at CDSs (all)
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	Entrez Gene ID:3190;
	KEGG GENES	KEGG GENES(3190);
	GeneCard	NA *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Cluster member H-Inv ID(s)		HIT000036940;  HIT000029547;  HIT000021240;  HIT000091034;  HIT000424133;  HIT000216554;  HIT000487476;  HIT000267621;  HIT000487603;  HIT000323341;  HIT000329497;  HIT000495368;  HIT000488691;  HIT000426828;  HIT000258858;
Additional cluster member candidate(s)		NA
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome multiple alignment;  ORF multiple alignment;

 

TOP 1-10 11-15 LAST

Cluster member (s)

Locus member number		1
H-Inv ID		HIT000036940
Accession number		BC014980.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Heterogeneous nuclear ribonucleoprotein K; hnRNP K; Transformation up-regulated nuclear protein; TUNP;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (P61978)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		Representative transcript;  Splicing isoform
Genomic location	Chromosome	9
	Location	9q21.32
	Position	86583824- 86595503
	Strand	-
Gene structure		16 exons

 

TOP 1-10 11-15 LAST

Locus member number		2
H-Inv ID		HIT000029547
Accession number		BC000355.2
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Heterogeneous nuclear ribonucleoprotein K isoform a.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_112553)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		NA
Genomic location	Chromosome	9
	Location	9q21.32
	Position	86583824- 86593368
	Strand	-
Gene structure		15 exons

 

TOP 1-10 11-15 LAST

Locus member number		3
H-Inv ID		HIT000021240
Accession number		AK096385.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Heterogeneous nuclear ribonucleoprotein K; hnRNP K; Transformation up-regulated nuclear protein; TUNP;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (P61978)  [Identity/coverage = 94.0%/86.39%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		Splicing isoform
Genomic location	Chromosome	9
	Location	9q21.32
	Position	86583202- 86595123
	Strand	-
Gene structure		14 exons

 

TOP 1-10 11-15 LAST

Locus member number		4
H-Inv ID		HIT000091034
Accession number		BC025321.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Heterogeneous nuclear ribonucleoprotein K; hnRNP K; Transformation up-regulated nuclear protein; TUNP;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (P61978)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		Splicing isoform
Genomic location	Chromosome	9
	Location	9q21.32
	Position	86583824- 86595105
	Strand	-
Gene structure		16 exons

 

TOP 1-10 11-15 LAST

Locus member number		5
H-Inv ID		HIT000424133
Accession number		AK291336.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Heterogeneous nuclear ribonucleoprotein K isoform a.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_112553)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		Splicing isoform
Genomic location	Chromosome	9
	Location	9q21.32
	Position	86584247- 86595519
	Strand	-
Gene structure		16 exons

 

TOP 1-10 11-15 LAST

Locus member number		6
H-Inv ID		HIT000216554
Accession number		S74678.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Heterogeneous nuclear ribonucleoprotein K; hnRNP K; Transformation up-regulated nuclear protein; TUNP;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (P61978)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		NA
Genomic location	Chromosome	9
	Location	9q21.32
	Position	86583461- 86593367
	Strand	-
Gene structure		15 exons

 

TOP 1-10 11-15 LAST

Locus member number		7
H-Inv ID		HIT000487476
Accession number		AB451263.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Heterogeneous nuclear ribonucleoprotein K isoform a.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_112553)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		NA
Genomic location	Chromosome	9
	Location	9q21.32
	Position	86584322- 86593167
	Strand	-
Gene structure		14 exons

 

TOP 1-10 11-15 LAST

Locus member number		8
H-Inv ID		HIT000267621
Accession number		CR456771.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Heterogeneous nuclear ribonucleoprotein K isoform a.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_002131)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		NA
Genomic location	Chromosome	9
	Location	9q21.32
	Position	86584322- 86593167
	Strand	-
Gene structure		14 exons

 

TOP 1-10 11-15 LAST

Locus member number		9
H-Inv ID		HIT000487603
Accession number		AB451390.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Heterogeneous nuclear ribonucleoprotein K isoform a.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_002131)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		NA
Genomic location	Chromosome	9
	Location	9q21.32
	Position	86584325- 86593167
	Strand	-
Gene structure		14 exons

 

TOP 1-10 11-15 LAST

Locus member number		10
H-Inv ID		HIT000323341
Accession number		X72727.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Heterogeneous nuclear ribonucleoprotein K isoform a.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_002131)  [Identity/coverage = 99.784%/100.0%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		NA
Genomic location	Chromosome	9
	Location	9q21.32
	Position	86583092- 86595519
	Strand	-
Gene structure		16 exons

 

TOP 1-10 11-15 LAST

Locus member number		11
H-Inv ID		HIT000329497
Accession number		AB209562.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Heterogeneous nuclear ribonucleoprotein K isoform a.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_112553)  [Identity/coverage = 99.773%/100.0%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		Splicing isoform
Genomic location	Chromosome	9
	Location	9q21.32
	Position	86583094- 86595117
	Strand	-
Gene structure		15 exons

 

TOP 1-10 11-15 LAST

Locus member number		12
H-Inv ID		HIT000495368
Accession number		AK300744.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Heterogeneous nuclear ribonucleoprotein K; hnRNP K; Transformation up-regulated nuclear protein; TUNP;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (P61978)  [Identity/coverage = 99.772%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		Splicing isoform
Genomic location	Chromosome	9
	Location	9q21.32
	Position	86583897- 86595129
	Strand	-
Gene structure		15 exons

 

TOP 1-10 11-15 LAST

Locus member number		13
H-Inv ID		HIT000488691
Accession number		AK294067.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Heterogeneous nuclear ribonucleoprotein K isoform a.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_002131)  [Identity/coverage = 98.475%/100.0%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		Splicing isoform
Genomic location	Chromosome	9
	Location	9q21.32
	Position	86584167- 86595159
	Strand	-
Gene structure		15 exons

 

TOP 1-10 11-15 LAST

Locus member number		14
H-Inv ID		HIT000426828
Accession number		AK307962.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Heterogeneous nuclear ribonucleoprotein K; hnRNP K;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (Q5ZIQ3)  [Identity/coverage = 94.562%/83.14%] to Gallus gallus (Chicken). protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		NA
Genomic location	Chromosome	9
	Location	9q21.32
	Position	86585200- 86595131
	Strand	-
Gene structure		15 exons

 

TOP 1-10 11-15 LAST

Locus member number		15
H-Inv ID		HIT000258858
Accession number		AY911506.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Heterogeneous nuclear ribonucleoprotein K isoform a.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_112553)  [Identity/coverage = 99.784%/100.0%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		NA
Genomic location	Chromosome	9
	Location	9q21.32
	Position	86584161- 86593323
	Strand	-
Gene structure		15 exons

Alternative splicing (AS) information

Pattern of alternative splicing isoforms	5' terminal AS;  3' terminal AS;  Internal AS;
Position of alternative splicing isoforms	Cassette;  Internal acceptor site;  Internal donor site;  Mutually exclusive;  Retained intron;
Alternative splicing isoform H-Inv ID(s)	HIT000091034;  HIT000329497;  HIT000495368;  HIT000424133;  HIT000488691;  HIT000036940;  HIT000021240;
Related H-InvDB links	H-DBAS;  G-integra;  cDNA-genome multiple alignment;  ORF multiple alignment;

Gene function information

H-Inv cluster ID		HIX0008131
Representative H-Inv ID		HIT000036940
Accession number		BC014980.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Heterogeneous nuclear ribonucleoprotein K; hnRNP K; Transformation up-regulated nuclear protein; TUNP;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (P61978)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene family/group	H-Inv gene family/group ID	NA
	Gene family/group name	NA
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000051002
	No. of interaction	18
	Interaction partner(s)	HIP000022035;  HIP000022049;  HIP000022971;  HIP000022971;  HIP000023960;  HIP000025001;  HIP000030471;  HIP000039590;  HIP000039653;  HIP000040680;  HIP000057536;  HIP000058310;  HIP000064456;  HIP000076215;  HIP000076215;  HIP000079240;  HIP000091500;  HIP000095024;
	BIND	145824;  177285;  177286;  19219;  24463;  24472;  263126;  50116;  50117;  50266;  54906;  57935;  57936;  57937;  57938;
	DIP	102592E;  111677E;  111706E;  112072E;  144758E;  151748E;  151750E;  151752E;  175753E;  179997E;  185077E;  185374E;
	MINT	MINT-2855592;  MINT-2859739;  MINT-2859758;  MINT-2859777;  MINT-3296872;  MINT-5205854;  MINT-6803834;  MINT-6803853;  MINT-6803869;  MINT-6803896;  MINT-6803939;  MINT-6823857;  MINT-6823877;  MINT-7035260;  MINT-7035286;  MINT-7035298;  MINT-7035309;  MINT-7035323;  MINT-7035338;  MINT-7945693;  MINT-7947479;  MINT-8200625;  MINT-8200636;  MINT-8200651;  MINT-8201404;  MINT-8201427;  MINT-8201449;
	HPRD	00146;  00298;  00496;  00535;  00579;  00589;  00655;  00796;  01095;  01228;  01284;  01301;  01501;  01726;  01746;  01801;  01818;  01819;  02186;  02511;  02877;  03128;  03129;  03144;  03158;  03183;  03926;  04066;  04184;  04205;  04207;  04257;  04340;  04360;  04530;  05059;  05088;  05156;  05270;  05378;  05496;  06515;  06691;  07601;  09045;  09060;  09113;  09273;  10007;  11303;  11488;  11535;  12048;  12752;  13775;  14358;  15334;  15998;  16246;  17835;  18043;
	IntAct	NA
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	Entrez Gene ID:3190;
	KEGG GENES	KEGG GENES(3190);
	GeneCard	NA *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Related H-InvDB links		G-integra;  PPI view;  H-DBAS;  Gene family;  Similarity search tool;  TACT;

Gene expression information

Last modified:27-May-2015

Tissue-specific expression			NA
Probe information	AceGene		NA
	Affymetrix GeneChip	HG-Focus	NA
		HG-U133	200775_s_at;
		HG-U133A	200775_s_at;
		HG-U133A_2	200775_s_at;
		HG-U133B	NA
		HG-U133_Plus_2	200775_s_at;
		HG-U95	NA
		HG-U95A	NA
		HG-U95B	NA
		HG-U95C	NA
		HG-U95D	NA
		HG-U95E	NA
		HG-U95Av2	NA
		HuEx-1_0	2578076;  2578092;  2578094;  2578096;  2632703;  2632704;  2632705;  2632706;  2632707;  2632708;  2632709;  2802833;  2802834;  2874170;  3170334;  3176991;  3176994;  3177003;  3177004;  3212299;  3212300;  3212313;  3212314;  3212315;  3212316;  3212319;  3212321;  3212324;  3212330;  3212331;  3212332;  3212334;  3212335;  3212342;  3370699;
		HuGeneFL	NA
	Agilent	Human 1A Oligo Microarray:PGID215	NA
		Whole Human Genome Oligo Microarray:PGID247	NA
Related H-InvDB links			H-ANGEL;  DNAProbeLocator;