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H-InvDB_8.3 released on March 26, 2013.
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H-Inv cluster ID: HIX0011432 Created date: 26-Mar-2013 Last modified: 20-Apr-2012
Definition: Transmembrane and TPR repeat-containing protein 4 isoform 2.
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0011432
Genomic location  G-integra Help Chromosome 13
Location 13q32.3
Position 101256090- 101327347
Strand -
Antisense cluster ID(s) HIX0026587 overlap at CDSs (all)
Database links RefSeq NM_032813; 
Ensembl ENST00000423847;  ENST00000496511;  ENST00000440120;  ENST00000489713;  ENST00000480433;  ENST00000342624;  ENST00000328767;  ENST00000478272;  ENST00000475272;  ENST00000376234;  ENST00000462211; 
Entrez Gene Entrez Gene ID:84899; 
KEGG GENES KEGG GENES(84899); 
GeneCard GeneCardTMTC4;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Cluster member H-Inv ID(s) HIT000056603;  HIT000013023;  HIT000056655;  HIT000038409;  HIT000044472;  HIT000010802;  HIT000017520;  HIT000423142;  HIT000494483;  HIT000077944; 
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 
Mini-G Locus map Locus map

 
TOP 1-10 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000056603
Accession number BX647956.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Transmembrane and TPR repeat-containing protein 4 isoform 2.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001073137)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol TMTC4 
HGNC aliases NA
HGNC name transmembrane and tetratricopeptide repeat containing 4 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 13
Location 13q32.3
Position 101256189- 101327079
Strand -
Gene structure 18 exons
 
TOP 1-10 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000013023
Accession number AK056409.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Transmembrane and TPR repeat-containing protein 4;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q5T4D3)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol TMTC4 
HGNC aliases NA
HGNC name transmembrane and tetratricopeptide repeat containing 4 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 13
Location 13q32.3
Position 101256188- 101327049
Strand -
Gene structure 19 exons
 
TOP 1-10 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000056655
Accession number BX648008.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Transmembrane and TPR repeat-containing protein 4 isoform 1.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_116202)  [Identity/coverage = 99.868%/99.87%] to Homo sapiens protein.
Gene symbol/name HGNC symbol TMTC4 
HGNC aliases NA
HGNC name transmembrane and tetratricopeptide repeat containing 4 
Transcript feature NA
Genomic location  G-integra Chromosome 13
Location 13q32.3
Position 101256189- 101327033
Strand -
Gene structure 18 exons
 
TOP 1-10 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000038409
Accession number BC018707.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Transmembrane and TPR repeat-containing protein 4;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q5T4D3)  [Identity/coverage = 100.0%/53.71%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol TMTC4 
HGNC aliases NA
HGNC name transmembrane and tetratricopeptide repeat containing 4 
Transcript feature NA
Genomic location  G-integra Chromosome 13
Location 13q32.3
Position 101277707- 101294565
Strand -
Gene structure 9 exons
 
TOP 1-10 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000044472
Accession number AK124599.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Transmembrane and TPR repeat-containing protein 4;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q5T4D3)  [Identity/coverage = 100.0%/6.61%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 13
Location 13q32.3
Position 101256189- 101260390
Strand -
Gene structure 2 exons
 
TOP 1-10 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000010802
Accession number AK027530.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Transmembrane and TPR repeat-containing protein 4;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q5T4D3)  [Identity/coverage = 99.423%/70.18%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol TMTC4 
HGNC aliases NA
HGNC name transmembrane and tetratricopeptide repeat containing 4 
Transcript feature NA
Genomic location  G-integra Chromosome 13
Location 13q32.3
Position 101256189- 101294487
Strand -
Gene structure 13 exons
 
TOP 1-10 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000017520
Accession number AK092653.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Transmembrane and TPR repeat-containing protein 4;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q5T4D3)  [Identity/coverage = 100.0%/4.18%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol TMTC4 
HGNC aliases NA
HGNC name transmembrane and tetratricopeptide repeat containing 4 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 13
Location 13q32.3
Position 101277164- 101291062
Strand -
Gene structure 7 exons
 
TOP 1-10 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000423142
Accession number AK290345.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Transmembrane and TPR repeat-containing protein 4 isoform 1.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_116202)  [Identity/coverage = 99.605%/99.87%] to Homo sapiens protein.
Gene symbol/name HGNC symbol TMTC4 
HGNC aliases NA
HGNC name transmembrane and tetratricopeptide repeat containing 4 
Transcript feature NA
Genomic location  G-integra Chromosome 13
Location 13q32.3
Position 101257030- 101327049
Strand -
Gene structure 18 exons
 
TOP 1-10 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000494483
Accession number AK299859.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Transmembrane and TPR repeat-containing protein 4 isoform 1.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_116202)  [Identity/coverage = 100.0%/99.87%] to Homo sapiens protein.
Gene symbol/name HGNC symbol TMTC4 
HGNC aliases NA
HGNC name transmembrane and tetratricopeptide repeat containing 4 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 13
Location 13q32.3
Position 101257125- 101327028
Strand -
Gene structure 16 exons
 
TOP 1-10 LAST 
Locus member number 10
H-Inv ID Transcript viewHIT000077944
Accession number AF339792.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Transmembrane and TPR repeat-containing protein 4;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q5T4D3)  [Identity/coverage = 100.0%/42.51%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol TMTC4 
HGNC aliases NA
HGNC name transmembrane and tetratricopeptide repeat containing 4 
Transcript feature NA
Genomic location  G-integra Chromosome 13
Location 13q32.3
Position 101256187- 101316546
Strand -
Gene structure 16 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Cassette;  Retained intron; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000044472;  Splicing isoformHIT000013023;  Splicing isoformHIT000017520;  Splicing isoformHIT000056603;  Splicing isoformHIT000494483; 
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0011432
Representative H-Inv ID Representative H-Inv IDHIT000056603
Accession number BX647956.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Transmembrane and TPR repeat-containing protein 4 isoform 2.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_001073137)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene family/group Gene family H-Inv gene family/group ID HIF0001152
Gene family/group name Tetratricopeptide region (IPR013026).
Evidence motif (InterPro) ID IPR013026
Gene symbol/name HGNC symbol TMTC4 
HGNC aliases NA
HGNC name transmembrane and tetratricopeptide repeat containing 4 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000036510
No. of interaction 1
Interaction partner(s) HIP000148666; 
BIND NA
DIP 137041E; 
MINT NA
HPRD NA
IntAct EBI-2362225; 
Database links RefSeq NM_032813; 
Ensembl ENST00000423847;  ENST00000496511;  ENST00000440120;  ENST00000489713;  ENST00000480433;  ENST00000342624;  ENST00000328767;  ENST00000478272;  ENST00000475272;  ENST00000376234;  ENST00000462211; 
Entrez Gene Entrez Gene ID:84899; 
KEGG GENES KEGG GENES(84899); 
GeneCard GeneCardTMTC4;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Related H-InvDB links G-integraG-integra;  PPI viewerPPI view;  H-DBASH-DBAS;  Tetratricopeptide region (IPR013026). Similarity Search ToolSimilarity search tool;  TACTTACT; 
Gene expression information   H-ANGEL DNAProbeLocator Last modified:20-Apr-2012
Tissue-specific expression  H-ANGEL neural; 
Probe
information DNAProbeLocator		 AceGene AGhsB191217; 
Affymetrix
GeneChip		 HG-Focus NA
HG-U133 225666_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 225666_at; 
HG-U133_Plus_2 1554101_a_at;  1554102_a_at;  225666_at; 
HG-U95 63314_at;  83057_at; 
HG-U95A NA
HG-U95B NA
HG-U95C 63314_at; 
HG-U95D 83057_at; 
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2844978;  2844979;  3499017;  3523157;  3523158;  3523160;  3523171;  3523172;  3523182;  3523183;  3523184;  3523193;  3523195;  3523196;  3523199;  3523200;  3523202;  3523204;  3523205;  3523217;  3523223;  3523224;  3523225;  3523226;  3523230;  3523231;  3523237; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P65230; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P65230;  A_24_P278853; 
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator; 

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:20-Apr-2012
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  156600;  167870;  193003;  602085;  603176;  604595;  606258;  609903; 
Disease related mutation NA
Co-occurred words and phrases with this gene name in PubMed (LEGENDA) LEGENDA Gene name Entrez Gene ID:(84899); 
Disease Entrez Gene ID:(84899); 
Gene function Entrez Gene ID:(84899); 
Substance Entrez Gene ID:(84899); 
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo Viewer;  LEGENDALEGENDA;