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H-Inv cluster ID: HIX0012231 Created date: 26-Mar-2013 Last modified: 20-Apr-2012 Definition: Histidine decarboxylase.

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Gene structure

H-Inv cluster ID		HIX0012231
Genomic location	Chromosome	15
	Location	15q21.2
	Position	50534144- 50558162
	Strand	-
Antisense cluster ID(s)		NA
Database links	RefSeq	NM_002112;
	Ensembl	ENST00000543581;  ENST00000267845;
	Entrez Gene	Entrez Gene ID:3067;
	KEGG GENES	KEGG GENES(3067);
	GeneCard	HDC;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Cluster member H-Inv ID(s)		HIT000195937;  HIT000010495;  HIT000321884;  HIT000390317;  HIT000502603;  HIT000427699;  HIT000429938;  HIT000429345;  HIT000100417;
Additional cluster member candidate(s)		NA
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome multiple alignment;  ORF multiple alignment;

 

TOP 1-9 LAST

Cluster member (s)

Locus member number		1
H-Inv ID		HIT000195937
Accession number		M60445.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Histidine decarboxylase.
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (NP_002103)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	HDC
	HGNC aliases	NA
	HGNC name	histidine decarboxylase
Transcript feature		Representative transcript;  Splicing isoform
Genomic location	Chromosome	15
	Location	15q21.2
	Position	50534144- 50557871
	Strand	-
Gene structure		12 exons

 

TOP 1-9 LAST

Locus member number		2
H-Inv ID		HIT000010495
Accession number		AK027221.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Histidine decarboxylase; HDC; EC=4.1.1.22;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (P19113)  [Identity/coverage = 92.971%/68.13%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	HDC
	HGNC aliases	NA
	HGNC name	histidine decarboxylase
Transcript feature		NA
Genomic location	Chromosome	15
	Location	15q21.2
	Position	50534147- 50545502
	Strand	-
Gene structure		5 exons

 

TOP 1-9 LAST

Locus member number		3
H-Inv ID		HIT000321884
Accession number		X54297.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Histidine decarboxylase; HDC; EC=4.1.1.22;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (P19113)  [Identity/coverage = 99.698%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	HDC
	HGNC aliases	NA
	HGNC name	histidine decarboxylase
Transcript feature		NA
Genomic location	Chromosome	15
	Location	15q21.2
	Position	50534151- 50557922
	Strand	-
Gene structure		12 exons

 

TOP 1-9 LAST

Locus member number		4
H-Inv ID		HIT000390317
Accession number		BC130527.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Histidine decarboxylase; HDC; EC=4.1.1.22;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (P19113)  [Identity/coverage = 99.698%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	HDC
	HGNC aliases	NA
	HGNC name	histidine decarboxylase
Transcript feature		NA
Genomic location	Chromosome	15
	Location	15q21.2
	Position	50534217- 50557863
	Strand	-
Gene structure		12 exons

 

TOP 1-9 LAST

Locus member number		5
H-Inv ID		HIT000502603
Accession number		BC144173.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Histidine decarboxylase; HDC; EC=4.1.1.22;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (P19113)  [Identity/coverage = 99.841%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	HDC
	HGNC aliases	NA
	HGNC name	histidine decarboxylase
Transcript feature		Splicing isoform
Genomic location	Chromosome	15
	Location	15q21.2
	Position	50534210- 50557863
	Strand	-
Gene structure		11 exons

 

TOP 1-9 LAST

Locus member number		6
H-Inv ID		HIT000427699
Accession number		AK308833.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Histidine decarboxylase; HDC; EC=4.1.1.22;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (P19113)  [Identity/coverage = 100.0%/36.4%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	HDC
	HGNC aliases	NA
	HGNC name	histidine decarboxylase
Transcript feature		Splicing isoform
Genomic location	Chromosome	15
	Location	15q21.2
	Position	50545923- 50558162
	Strand	-
Gene structure		6 exons

 

TOP 1-9 LAST

Locus member number		7
H-Inv ID		HIT000429938
Accession number		AK311072.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Histidine decarboxylase; HDC; EC=4.1.1.22;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (P19113)  [Identity/coverage = 99.585%/36.4%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	HDC
	HGNC aliases	NA
	HGNC name	histidine decarboxylase
Transcript feature		NA
Genomic location	Chromosome	15
	Location	15q21.2
	Position	50546120- 50557879
	Strand	-
Gene structure		6 exons

 

TOP 1-9 LAST

Locus member number		8
H-Inv ID		HIT000429345
Accession number		AK310479.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Histidine decarboxylase; HDC; EC=4.1.1.22;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (P19113)  [Identity/coverage = 100.0%/39.73%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	HDC
	HGNC aliases	NA
	HGNC name	histidine decarboxylase
Transcript feature		NA
Genomic location	Chromosome	15
	Location	15q21.2
	Position	50545117- 50557923
	Strand	-
Gene structure		5 exons

 

TOP 1-9 LAST

Locus member number		9
H-Inv ID		HIT000100417
Accession number		D10088.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Hypothetical short protein.
Similarity category		Category: Hypothetical short protein(Category VI).
		Hypothetical short protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		NA
Genomic location	Chromosome	15
	Location	15q21.2
	Position	50544972- 50545796
	Strand	-
Gene structure		1 exons

Alternative splicing (AS) information

Pattern of alternative splicing isoforms	3' terminal AS;  Internal AS;
Position of alternative splicing isoforms	Cassette;
Alternative splicing isoform H-Inv ID(s)	HIT000195937;  HIT000502603;  HIT000427699;
Related H-InvDB links	H-DBAS;  G-integra;  cDNA-genome multiple alignment;  ORF multiple alignment;

Gene function information

H-Inv cluster ID		HIX0012231
Representative H-Inv ID		HIT000195937
Accession number		M60445.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Histidine decarboxylase.
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (NP_002103)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene family/group	H-Inv gene family/group ID	HIF0003066
	Gene family/group name	Pyridoxal phosphate-dependent decarboxylase (IPR002129).
	Evidence motif (InterPro) ID	IPR002129
Gene symbol/name	HGNC symbol	HDC
	HGNC aliases	NA
	HGNC name	histidine decarboxylase
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000077840
	No. of interaction	1
	Interaction partner(s)	HIP000029955;
	BIND	NA
	DIP	179729E;
	MINT	NA
	HPRD	00411;
	IntAct	EBI-2307988;  EBI-631396;  EBI-631316;  EBI-2310636;
Database links	RefSeq	NM_002112;
	Ensembl	ENST00000543581;  ENST00000267845;
	Entrez Gene	Entrez Gene ID:3067;
	KEGG GENES	KEGG GENES(3067);
	GeneCard	HDC;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Related H-InvDB links		G-integra;  PPI view;  H-DBAS;  Pyridoxal phosphate-dependent decarboxylase (IPR002129). Similarity search tool;  TACT;

Gene expression information

Last modified:20-Apr-2012

Tissue-specific expression			NA
Probe information	AceGene		AGhsA160814;
	Affymetrix GeneChip	HG-Focus	207067_s_at;
		HG-U133	207067_s_at;
		HG-U133A	207067_s_at;
		HG-U133A_2	207067_s_at;
		HG-U133B	NA
		HG-U133_Plus_2	207067_s_at;
		HG-U95	35606_at;
		HG-U95A	35606_at;
		HG-U95B	NA
		HG-U95C	NA
		HG-U95D	NA
		HG-U95E	NA
		HG-U95Av2	NA
		HuEx-1_0	3623656;  3623657;  3623658;  3623659;  3623660;  3623662;  3623667;  3623668;  3623670;  3623671;  3623672;  3623674;  3623676;  3623677;  3623679;  3623680;
		HuGeneFL	D16583_at;
	Agilent	Human 1A Oligo Microarray:PGID215	A_23_P117662;
		Whole Human Genome Oligo Microarray:PGID247	A_23_P117662;
Related H-InvDB links			H-ANGEL;  DNAProbeLocator;

Disease/pathology information

Last modified:20-Apr-2012

Disease relation			Disease name:NA
Related information in OMIM			OMIM ID:NA Title:NA
Co-localized orphan diseases			OMIM ID:  105600;  122460;  214900;  601228;  604321;  604329;  605728;  609273;
Disease related mutation			NA
Co-occurred words and phrases with this gene name in PubMed (LEGENDA)	Gene name	Entrez Gene ID:(3067);
	Disease	Entrez Gene ID:(3067);
	Gene function	Entrez Gene ID:(3067);
	Substance	Entrez Gene ID:(3067);
Related H-InvDB links			DiseaseInfo Viewer;  LEGENDA;