H-InvDB x AHG DB
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H-InvDB_8.3 released on March 26, 2013.
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H-Inv cluster ID: HIX0012231 Created date: 26-Mar-2013 Last modified: 26-Mar-2013
Definition: Histidine decarboxylase.
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0012231
Genomic location  G-integra Help Chromosome 15
Location 15q21.2
Position 50534144- 50558162
Strand -
Antisense cluster ID(s) NA
Database links RefSeq NM_002112
Ensembl ENST00000543581ENST00000267845
Entrez Gene Entrez Gene ID:3067
KEGG GENES KEGG GENES(3067)
GeneCard GeneCardHDC*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000195937HIT000010495HIT000321884HIT000390317HIT000502603HIT000427699HIT000429938HIT000429345HIT000100417
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-9 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000195937
Accession number M60445.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Histidine decarboxylase.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_002103)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol HDC 
HGNC aliases NA
HGNC name histidine decarboxylase 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 15
Location 15q21.2
Position 50534144- 50557871
Strand -
Gene structure 12 exons
 
TOP 1-9 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000010495
Accession number AK027221.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Histidine decarboxylase; HDC; EC=4.1.1.22;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P19113)  [Identity/coverage = 92.971%/68.13%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HDC 
HGNC aliases NA
HGNC name histidine decarboxylase 
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q21.2
Position 50534147- 50545502
Strand -
Gene structure 5 exons
 
TOP 1-9 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000321884
Accession number X54297.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Histidine decarboxylase; HDC; EC=4.1.1.22;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P19113)  [Identity/coverage = 99.698%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HDC 
HGNC aliases NA
HGNC name histidine decarboxylase 
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q21.2
Position 50534151- 50557922
Strand -
Gene structure 12 exons
 
TOP 1-9 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000390317
Accession number BC130527.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Histidine decarboxylase; HDC; EC=4.1.1.22;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P19113)  [Identity/coverage = 99.698%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HDC 
HGNC aliases NA
HGNC name histidine decarboxylase 
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q21.2
Position 50534217- 50557863
Strand -
Gene structure 12 exons
 
TOP 1-9 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000502603
Accession number BC144173.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Histidine decarboxylase; HDC; EC=4.1.1.22;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P19113)  [Identity/coverage = 99.841%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HDC 
HGNC aliases NA
HGNC name histidine decarboxylase 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 15
Location 15q21.2
Position 50534210- 50557863
Strand -
Gene structure 11 exons
 
TOP 1-9 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000427699
Accession number AK308833.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Histidine decarboxylase; HDC; EC=4.1.1.22;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P19113)  [Identity/coverage = 100.0%/36.4%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HDC 
HGNC aliases NA
HGNC name histidine decarboxylase 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 15
Location 15q21.2
Position 50545923- 50558162
Strand -
Gene structure 6 exons
 
TOP 1-9 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000429938
Accession number AK311072.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Histidine decarboxylase; HDC; EC=4.1.1.22;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P19113)  [Identity/coverage = 99.585%/36.4%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HDC 
HGNC aliases NA
HGNC name histidine decarboxylase 
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q21.2
Position 50546120- 50557879
Strand -
Gene structure 6 exons
 
TOP 1-9 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000429345
Accession number AK310479.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Histidine decarboxylase; HDC; EC=4.1.1.22;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P19113)  [Identity/coverage = 100.0%/39.73%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol HDC 
HGNC aliases NA
HGNC name histidine decarboxylase 
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q21.2
Position 50545117- 50557923
Strand -
Gene structure 5 exons
 
TOP 1-9 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000100417
Accession number D10088.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical short protein.
Similarity category  Help Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q21.2
Position 50544972- 50545796
Strand -
Gene structure 1 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Cassette; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000195937Splicing isoformHIT000502603Splicing isoformHIT000427699
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0012231
Representative H-Inv ID Representative H-Inv IDHIT000195937
Accession number M60445.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Histidine decarboxylase.
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (NP_002103)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene family/group Gene family H-Inv gene family/group ID HIF0003066
Gene family/group name Pyridoxal phosphate-dependent decarboxylase (IPR002129).
Evidence motif (InterPro) ID IPR002129
Gene symbol/name HGNC symbol HDC 
HGNC aliases NA
HGNC name histidine decarboxylase 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000077840
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NM_002112
Ensembl ENST00000543581ENST00000267845
Entrez Gene Entrez Gene ID:3067
KEGG GENES KEGG GENES(3067)
GeneCard GeneCardHDC*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Pyridoxal phosphate-dependent decarboxylase (IPR002129). Similarity Search ToolSimilarity search tool TACTTACT
Gene expression information   H-ANGEL DNAProbeLocator Last modified:26-Mar-2013
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsA160814; 
Affymetrix
GeneChip
HG-Focus 207067_s_at; 
HG-U133 207067_s_at; 
HG-U133A 207067_s_at; 
HG-U133A_2 207067_s_at; 
HG-U133B NA
HG-U133_Plus_2 207067_s_at; 
HG-U95 35606_at; 
HG-U95A 35606_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 3623656;  3623657;  3623658;  3623659;  3623660;  3623662;  3623667;  3623668;  3623670;  3623671;  3623672;  3623674;  3623676;  3623677;  3623679;  3623680; 
HuGeneFL D16583_at; 
Agilent Human 1A Oligo Microarray:PGID215 A_23_P117662; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P117662; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:26-Mar-2013
Disease relation Disease name:NA
Related information in OMIM OMIM ID:NA Title:NA
Co-localized orphan diseases OMIM ID:  105600122460214900601228604321604329605728609273
Disease related mutation NA
Co-occurred words and phrases with this gene name in PubMed (LEGENDA) LEGENDA Gene name Entrez Gene ID:(3067); 
Disease Entrez Gene ID:(3067); 
Gene function Entrez Gene ID:(3067); 
Substance Entrez Gene ID:(3067); 
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo ViewerLEGENDALEGENDA