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H-Inv cluster ID: HIX0013500 Created date: 26-Mar-2013 Last modified: 27-May-2015 Definition: Similar to Tumor necrosis factor ligand superfamily member 13 isoform gamma proprotein.

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Gene structure

H-Inv cluster ID		HIX0013500
Genomic location	Chromosome	17
	Location	17p13.1
	Position	7461609- 7464925
	Strand	+
Antisense cluster ID(s)		NA
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	Entrez Gene ID:8741;
	KEGG GENES	KEGG GENES(8741);
	GeneCard	TNFSF13;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Cluster member H-Inv ID(s)		HIT000069829;  HIT000033609;  HIT000015565;  HIT000084236;  HIT000064015;  HIT000069827;  HIT000072890;  HIT000252924;  HIT000433384;  HIT000071075;  HIT000266554;  HIT000069828;  HIT000495845;  HIT000342023;  HIT000384686;  HIT000268909;  HIT000266555;  HIT000268942;  HIT000253408;  HIT000468754;
Additional cluster member candidate(s)		NA
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome multiple alignment;  ORF multiple alignment;

 

TOP 1-10 11-20 LAST

Cluster member (s)

Locus member number		1
H-Inv ID		HIT000069829
Accession number		AF114013.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Tumor necrosis factor ligand superfamily member 13 isoform gamma proprotein.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_742085)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	TNFSF13
	HGNC aliases	NA
	HGNC name	tumor necrosis factor (ligand) superfamily, member 13
Transcript feature		Representative transcript;  Splicing isoform
Genomic location	Chromosome	17
	Location	17p13.1
	Position	7462104- 7464918
	Strand	+
Gene structure		7 exons

 

TOP 1-10 11-20 LAST

Locus member number		2
H-Inv ID		HIT000033609
Accession number		BC008042.2
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Tumor necrosis factor ligand superfamily member 13 isoform gamma proprotein.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_742085)  [Identity/coverage = 99.595%/100.0%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	TNFSF13
	HGNC aliases	NA
	HGNC name	tumor necrosis factor (ligand) superfamily, member 13
Transcript feature		NA
Genomic location	Chromosome	17
	Location	17p13.1
	Position	7462254- 7464918
	Strand	+
Gene structure		7 exons

 

TOP 1-10 11-20 LAST

Locus member number		3
H-Inv ID		HIT000015565
Accession number		AK090698.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Tumor necrosis factor ligand superfamily member 13 isoform beta proprotein.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_742084)  [Identity/coverage = 99.573%/100.0%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	TNFSF13
	HGNC aliases	NA
	HGNC name	tumor necrosis factor (ligand) superfamily, member 13
Transcript feature		Splicing isoform
Genomic location	Chromosome	17
	Location	17p13.1
	Position	7461793- 7464917
	Strand	+
Gene structure		5 exons

 

TOP 1-10 11-20 LAST

Locus member number		4
H-Inv ID		HIT000084236
Accession number		AY081050.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Tumor necrosis factor ligand superfamily member 13; A proliferation-inducing ligand; APRIL; TNF- and APOL-related leukocyte expressed ligand 2; TALL-2; TNF-related death ligand 1; TRDL-1; AltName: CD_antigen=CD256; Precursor;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (O75888)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	TNFSF13
	HGNC aliases	NA
	HGNC name	tumor necrosis factor (ligand) superfamily, member 13
Transcript feature		NA
Genomic location	Chromosome	17
	Location	17p13.1
	Position	7462085- 7464918
	Strand	+
Gene structure		6 exons

 

TOP 1-10 11-20 LAST

Locus member number		5
H-Inv ID		HIT000064015
Accession number		AF046888.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Tumor necrosis factor ligand superfamily member 13; A proliferation-inducing ligand; APRIL; TNF- and APOL-related leukocyte expressed ligand 2; TALL-2; TNF-related death ligand 1; TRDL-1; AltName: CD_antigen=CD256; Precursor;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (O75888)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	TNFSF13
	HGNC aliases	NA
	HGNC name	tumor necrosis factor (ligand) superfamily, member 13
Transcript feature		NA
Genomic location	Chromosome	17
	Location	17p13.1
	Position	7462085- 7464462
	Strand	+
Gene structure		6 exons

 

TOP 1-10 11-20 LAST

Locus member number		6
H-Inv ID		HIT000069827
Accession number		AF114011.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Tumor necrosis factor ligand superfamily member 13; A proliferation-inducing ligand; APRIL; TNF- and APOL-related leukocyte expressed ligand 2; TALL-2; TNF-related death ligand 1; TRDL-1; AltName: CD_antigen=CD256; Precursor;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (O75888)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	TNFSF13
	HGNC aliases	NA
	HGNC name	tumor necrosis factor (ligand) superfamily, member 13
Transcript feature		NA
Genomic location	Chromosome	17
	Location	17p13.1
	Position	7462085- 7464376
	Strand	+
Gene structure		6 exons

 

TOP 1-10 11-20 LAST

Locus member number		7
H-Inv ID		HIT000072890
Accession number		AF184972.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Tumor necrosis factor ligand superfamily member 13; A proliferation-inducing ligand; APRIL; TNF- and APOL-related leukocyte expressed ligand 2; TALL-2; TNF-related death ligand 1; TRDL-1; AltName: CD_antigen=CD256; Precursor;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (O75888)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	TNFSF13
	HGNC aliases	NA
	HGNC name	tumor necrosis factor (ligand) superfamily, member 13
Transcript feature		NA
Genomic location	Chromosome	17
	Location	17p13.1
	Position	7462232- 7464471
	Strand	+
Gene structure		6 exons

 

TOP 1-10 11-20 LAST

Locus member number		8
H-Inv ID		HIT000252924
Accession number		AY358880.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Tumor necrosis factor ligand superfamily member 13; A proliferation-inducing ligand; APRIL; TNF- and APOL-related leukocyte expressed ligand 2; TALL-2; TNF-related death ligand 1; TRDL-1; AltName: CD_antigen=CD256; Precursor;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (O75888)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	TNFSF13
	HGNC aliases	NA
	HGNC name	tumor necrosis factor (ligand) superfamily, member 13
Transcript feature		Splicing isoform
Genomic location	Chromosome	17
	Location	17p13.1
	Position	7462253- 7464361
	Strand	+
Gene structure		6 exons

 

TOP 1-10 11-20 LAST

Locus member number		9
H-Inv ID		HIT000433384
Accession number		AK314518.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Tumor necrosis factor ligand superfamily member 13; A proliferation-inducing ligand; APRIL; TNF- and APOL-related leukocyte expressed ligand 2; TALL-2; TNF-related death ligand 1; TRDL-1; AltName: CD_antigen=CD256; Precursor;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (O75888)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	TNFSF13
	HGNC aliases	NA
	HGNC name	tumor necrosis factor (ligand) superfamily, member 13
Transcript feature		NA
Genomic location	Chromosome	17
	Location	17p13.1
	Position	7462070- 7464150
	Strand	+
Gene structure		6 exons

 

TOP 1-10 11-20 LAST

Locus member number		10
H-Inv ID		HIT000071075
Accession number		AF136294.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Tumor necrosis factor ligand superfamily member 13; A proliferation-inducing ligand; APRIL; TNF- and APOL-related leukocyte expressed ligand 2; TALL-2; TNF-related death ligand 1; TRDL-1; AltName: CD_antigen=CD256; Precursor;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (O75888)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	TNFSF13
	HGNC aliases	NA
	HGNC name	tumor necrosis factor (ligand) superfamily, member 13
Transcript feature		NA
Genomic location	Chromosome	17
	Location	17p13.1
	Position	7462357- 7464150
	Strand	+
Gene structure		6 exons

 

TOP 1-10 11-20 LAST

Locus member number		11
H-Inv ID		HIT000266554
Accession number		BT019561.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Tumor necrosis factor ligand superfamily member 13; A proliferation-inducing ligand; APRIL; TNF- and APOL-related leukocyte expressed ligand 2; TALL-2; TNF-related death ligand 1; TRDL-1; AltName: CD_antigen=CD256; Precursor;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (O75888)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	TNFSF13
	HGNC aliases	NA
	HGNC name	tumor necrosis factor (ligand) superfamily, member 13
Transcript feature		NA
Genomic location	Chromosome	17
	Location	17p13.1
	Position	7462357- 7464148
	Strand	+
Gene structure		6 exons

 

TOP 1-10 11-20 LAST

Locus member number		12
H-Inv ID		HIT000069828
Accession number		AF114012.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Tumor necrosis factor ligand superfamily member 13 isoform beta proprotein.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_742084)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	TNFSF13
	HGNC aliases	NA
	HGNC name	tumor necrosis factor (ligand) superfamily, member 13
Transcript feature		NA
Genomic location	Chromosome	17
	Location	17p13.1
	Position	7462160- 7464918
	Strand	+
Gene structure		5 exons

 

TOP 1-10 11-20 LAST

Locus member number		13
H-Inv ID		HIT000495845
Accession number		AK301221.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Tumor necrosis factor ligand superfamily member 13; A proliferation-inducing ligand; APRIL; TNF- and APOL-related leukocyte expressed ligand 2; TALL-2; TNF-related death ligand 1; TRDL-1; AltName: CD_antigen=CD256; Precursor;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (O75888)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	TNFSF13
	HGNC aliases	NA
	HGNC name	tumor necrosis factor (ligand) superfamily, member 13
Transcript feature		Splicing isoform
Genomic location	Chromosome	17
	Location	17p13.1
	Position	7462076- 7464384
	Strand	+
Gene structure		5 exons

 

TOP 1-10 11-20 LAST

Locus member number		14
H-Inv ID		HIT000342023
Accession number		DQ149579.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Tumor necrosis factor ligand superfamily member 13; A proliferation-inducing ligand; APRIL; TNF- and APOL-related leukocyte expressed ligand 2; TALL-2; TNF-related death ligand 1; TRDL-1; AltName: CD_antigen=CD256; Precursor;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (O75888)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	TNFSF13
	HGNC aliases	NA
	HGNC name	tumor necrosis factor (ligand) superfamily, member 13
Transcript feature		NA
Genomic location	Chromosome	17
	Location	17p13.1
	Position	7462327- 7464388
	Strand	+
Gene structure		5 exons

 

TOP 1-10 11-20 LAST

Locus member number		15
H-Inv ID		HIT000384686
Accession number		AK225556.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Tumor necrosis factor ligand superfamily member 13; A proliferation-inducing ligand; APRIL; TNF- and APOL-related leukocyte expressed ligand 2; TALL-2; TNF-related death ligand 1; TRDL-1; AltName: CD_antigen=CD256; Precursor;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (O75888)  [Identity/coverage = 99.6%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	TNFSF13
	HGNC aliases	NA
	HGNC name	tumor necrosis factor (ligand) superfamily, member 13
Transcript feature		NA
Genomic location	Chromosome	17
	Location	17p13.1
	Position	7462065- 7464918
	Strand	+
Gene structure		6 exons

 

TOP 1-10 11-20 LAST

Locus member number		16
H-Inv ID		HIT000268909
Accession number		CR542040.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Tumor necrosis factor ligand superfamily member 13; A proliferation-inducing ligand; APRIL; TNF- and APOL-related leukocyte expressed ligand 2; TALL-2; TNF-related death ligand 1; TRDL-1; AltName: CD_antigen=CD256; Precursor;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (O75888)  [Identity/coverage = 99.2%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	TNFSF13
	HGNC aliases	NA
	HGNC name	tumor necrosis factor (ligand) superfamily, member 13
Transcript feature		NA
Genomic location	Chromosome	17
	Location	17p13.1
	Position	7462357- 7464150
	Strand	+
Gene structure		6 exons

 

TOP 1-10 11-20 LAST

Locus member number		17
H-Inv ID		HIT000266555
Accession number		BT019562.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Tumor necrosis factor ligand superfamily member 13; A proliferation-inducing ligand; APRIL; TNF- and APOL-related leukocyte expressed ligand 2; TALL-2; TNF-related death ligand 1; TRDL-1; AltName: CD_antigen=CD256; Precursor;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (O75888)  [Identity/coverage = 99.6%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	TNFSF13
	HGNC aliases	NA
	HGNC name	tumor necrosis factor (ligand) superfamily, member 13
Transcript feature		NA
Genomic location	Chromosome	17
	Location	17p13.1
	Position	7462357- 7464148
	Strand	+
Gene structure		6 exons

 

TOP 1-10 11-20 LAST

Locus member number		18
H-Inv ID		HIT000268942
Accession number		CR542073.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Tumor necrosis factor ligand superfamily member 13; A proliferation-inducing ligand; APRIL; TNF- and APOL-related leukocyte expressed ligand 2; TALL-2; TNF-related death ligand 1; TRDL-1; AltName: CD_antigen=CD256; Precursor;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (O75888)  [Identity/coverage = 99.6%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	TNFSF13
	HGNC aliases	NA
	HGNC name	tumor necrosis factor (ligand) superfamily, member 13
Transcript feature		NA
Genomic location	Chromosome	17
	Location	17p13.1
	Position	7462357- 7464147
	Strand	+
Gene structure		6 exons

 

TOP 1-10 11-20 LAST

Locus member number		19
H-Inv ID		HIT000253408
Accession number		AY377858.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Tumor necrosis factor ligand superfamily member 13; A proliferation-inducing ligand; APRIL; TNF- and APOL-related leukocyte expressed ligand 2; TALL-2; TNF-related death ligand 1; TRDL-1; AltName: CD_antigen=CD256; Precursor;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (O75888)  [Identity/coverage = 100.0%/58.4%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	TNFSF13
	HGNC aliases	NA
	HGNC name	tumor necrosis factor (ligand) superfamily, member 13
Transcript feature		NA
Genomic location	Chromosome	17
	Location	17p13.1
	Position	7462995- 7464150
	Strand	+
Gene structure		5 exons

 

TOP 1-10 11-20 LAST

Locus member number		20
H-Inv ID		HIT000468754
Accession number		EF211088.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to TNFSF12-TNFSF13 protein.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_742086)  [Identity/coverage = 100.0%/36.97%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	TNFSF13
	HGNC aliases	NA
	HGNC name	tumor necrosis factor (ligand) superfamily, member 13
Transcript feature		Splicing isoform
Genomic location	Chromosome	17
	Location	17p13.1
	Position	7462327- 7464497
	Strand	+
Gene structure		4 exons

Alternative splicing (AS) information

Pattern of alternative splicing isoforms	3' terminal AS;  Internal AS;
Position of alternative splicing isoforms	Cassette;  Internal acceptor site;  Mutually exclusive;  Retained intron;
Alternative splicing isoform H-Inv ID(s)	HIT000252924;  HIT000495845;  HIT000015565;  HIT000468754;  HIT000069829;
Related H-InvDB links	H-DBAS;  G-integra;  cDNA-genome multiple alignment;  ORF multiple alignment;

Gene function information

H-Inv cluster ID		HIX0013500
Representative H-Inv ID		HIT000069829
Accession number		AF114013.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Tumor necrosis factor ligand superfamily member 13 isoform gamma proprotein.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_742085)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene family/group	H-Inv gene family/group ID	NA
	Gene family/group name	NA
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	TNFSF13
	HGNC aliases	NA
	HGNC name	tumor necrosis factor (ligand) superfamily, member 13
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000082794
	No. of interaction	14
	Interaction partner(s)	HIP000022035;  HIP000022049;  HIP000030471;  HIP000032450;  HIP000036913;  HIP000036913;  HIP000039653;  HIP000040680;  HIP000041686;  HIP000057536;  HIP000064456;  HIP000075877;  HIP000079240;  HIP000083074;
	BIND	NA
	DIP	11062E;  11067E;
	MINT	NA
	HPRD	04122;  05365;
	IntAct	NA
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	Entrez Gene ID:8741;
	KEGG GENES	KEGG GENES(8741);
	GeneCard	TNFSF13;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Related H-InvDB links		G-integra;  PPI view;  H-DBAS;  Gene family;  Similarity search tool;  TACT;

Gene expression information

Last modified:27-May-2015

Tissue-specific expression			NA
Probe information	AceGene		AGhsB020918;  AGhsB230110;
	Affymetrix GeneChip	HG-Focus	209500_x_at;
		HG-U133	209499_x_at;  209500_x_at;  210314_x_at;  211495_x_at;  229326_at;
		HG-U133A	209499_x_at;  209500_x_at;  210314_x_at;  211495_x_at;
		HG-U133A_2	209499_x_at;  209500_x_at;  210314_x_at;  211495_x_at;
		HG-U133B	229326_at;
		HG-U133_Plus_2	209499_x_at;  209500_x_at;  210314_x_at;  211495_x_at;  229326_at;
		HG-U95	35287_at;  58644_at;
		HG-U95A	35287_at;
		HG-U95B	58644_at;
		HG-U95C	NA
		HG-U95D	NA
		HG-U95E	NA
		HG-U95Av2	NA
		HuEx-1_0	3708780;  3708781;  3708782;  3708783;  3708785;  3708788;  3708789;  3708790;  3708791;  3708794;  3708795;  3708796;  3708797;  3743818;  3743820;
		HuGeneFL	NA
	Agilent	Human 1A Oligo Microarray:PGID215	A_23_P152620;
		Whole Human Genome Oligo Microarray:PGID247	A_23_P152620;
Related H-InvDB links			H-ANGEL;  DNAProbeLocator;