H-InvDB x AHG DB
Locus view
H-InvDB_9.0 released on May 27, 2015.
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H-Inv cluster ID: HIX0014236 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Coiled-coil domain-containing protein 40 isoform 2.
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0014236
Genomic location  G-integra Help Chromosome 17
Location 17q25.3
Position 78010431- 78074412
Strand +
Antisense cluster ID(s) NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:55036
KEGG GENES KEGG GENES(55036)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000093796HIT000003235HIT000259844
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-3 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000093796
Accession number BC035251.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Coiled-coil domain-containing protein 40 isoform 2.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001230271)  [Identity/coverage = 99.126%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 17
Location 17q25.3
Position 78010442- 78064617
Strand +
Gene structure 19 exons
 
TOP 1-3 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000003235
Accession number AK000760.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Coiled-coil domain-containing protein 40;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q4G0X9)  [Identity/coverage = 99.423%/45.53%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 17
Location 17q25.3
Position 78010451- 78041700
Strand +
Gene structure 11 exons
 
TOP 1-3 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000259844
Accession number BC058288.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Coiled-coil domain-containing protein 40;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q4G0X9)  [Identity/coverage = 100.0%/38.44%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 17
Location 17q25.3
Position 78010457- 78040569
Strand +
Gene structure 9 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Cassette;  Internal acceptor site;  Retained intron; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000003235Splicing isoformHIT000259844Splicing isoformHIT000093796
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0014236
Representative H-Inv ID Representative H-Inv IDHIT000093796
Accession number BC035251.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Coiled-coil domain-containing protein 40 isoform 2.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001230271)  [Identity/coverage = 99.126%/100.0%] to Homo sapiens protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000026098
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:55036
KEGG GENES KEGG GENES(55036)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Gene familyGene family;  Similarity Search ToolSimilarity search tool TACTTACT
Gene expression information   H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsB250622; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 220593_s_at; 
HG-U133A 220593_s_at; 
HG-U133A_2 220593_s_at; 
HG-U133B NA
HG-U133_Plus_2 220593_s_at; 
HG-U95 75497_at; 
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E 75497_at; 
HG-U95Av2 NA
HuEx-1_0 3737080;  3737081;  3737082;  3737083;  3737084;  3737088;  3737091;  3737092;  3737093;  3737094;  3737098;  3737099;  3737102;  3737110;  3737112;  3737113;  3737115;  3737116;  3737119;  3737122;  3737124;  3737125;  3737126;  3737127;  3773288; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator