H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Inv cluster ID: HIX0014256 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Protein disulfide-isomerase; PDI; EC=5.3.4.1; Cellular thyroid hormone-binding protein; Prolyl 4-hydroxylase subunit beta; p55; Precursor;
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0014256
Genomic location  G-integra Help Chromosome 17
Location 17q25.3
Position 79801034- 79818570
Strand -
Antisense cluster ID(s) NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:5034; 
KEGG GENES KEGG GENES(5034); 
GeneCard GeneCardP4HB;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Cluster member H-Inv ID(s) HIT000040847;  HIT000035078;  HIT000020793;  HIT000048656;  HIT000264703;  HIT000434497;  HIT000492591;  HIT000191088;  HIT000491705;  HIT000321117;  HIT000495185;  HIT000036744;  HIT000321239; 
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 
Mini-G Locus map Locus map

 
TOP 1-10 11-13 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000040847
Accession number BC029617.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Protein disulfide-isomerase; PDI; EC=5.3.4.1; Cellular thyroid hormone-binding protein; Prolyl 4-hydroxylase subunit beta; p55; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P07237)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol P4HB 
HGNC aliases "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase; thyroid hormone binding protein p55)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase-associated 1)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide" 
HGNC name prolyl 4-hydroxylase, beta polypeptide 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 17
Location 17q25.3
Position 79801037- 79818391
Strand -
Gene structure 11 exons
 
TOP 1-10 11-13 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000035078
Accession number BC010859.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Protein disulfide-isomerase; PDI; EC=5.3.4.1; Cellular thyroid hormone-binding protein; Prolyl 4-hydroxylase subunit beta; p55; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P07237)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol P4HB 
HGNC aliases "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase; thyroid hormone binding protein p55)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase-associated 1)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide" 
HGNC name prolyl 4-hydroxylase, beta polypeptide 
Transcript feature NA
Genomic location  G-integra Chromosome 17
Location 17q25.3
Position 79801037- 79818391
Strand -
Gene structure 11 exons
 
TOP 1-10 11-13 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000020793
Accession number AK095938.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Protein disulfide-isomerase; PDI; dPDI; EC=5.3.4.1; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P54399)  [Identity/coverage = 56.787%/89.31%] to Drosophila melanogaster (Fruit fly). protein.
Gene symbol/name HGNC symbol P4HB 
HGNC aliases "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase; thyroid hormone binding protein p55)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase-associated 1)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide" 
HGNC name prolyl 4-hydroxylase, beta polypeptide 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 17
Location 17q25.3
Position 79801037- 79818442
Strand -
Gene structure 11 exons
 
TOP 1-10 11-13 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000048656
Accession number AK128783.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Protein disulfide-isomerase; PDI; EC=5.3.4.1; Cellular thyroid hormone-binding protein; Prolyl 4-hydroxylase subunit beta; p55; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P07237)  [Identity/coverage = 100.0%/63.58%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol P4HB 
HGNC aliases "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase; thyroid hormone binding protein p55)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase-associated 1)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide" 
HGNC name prolyl 4-hydroxylase, beta polypeptide 
Transcript feature NA
Genomic location  G-integra Chromosome 17
Location 17q25.3
Position 79801037- 79813086
Strand -
Gene structure 8 exons
 
TOP 1-10 11-13 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000264703
Accession number BC071892.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Protein disulfide-isomerase; PDI; EC=5.3.4.1; Cellular thyroid hormone-binding protein; Prolyl 4-hydroxylase subunit beta; p55; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P07237)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol P4HB 
HGNC aliases "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase; thyroid hormone binding protein p55)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase-associated 1)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide" 
HGNC name prolyl 4-hydroxylase, beta polypeptide 
Transcript feature NA
Genomic location  G-integra Chromosome 17
Location 17q25.3
Position 79801042- 79818350
Strand -
Gene structure 11 exons
 
TOP 1-10 11-13 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000434497
Accession number AK315631.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Protein disulfide-isomerase; PDI; EC=5.3.4.1; Cellular thyroid hormone-binding protein; Prolyl 4-hydroxylase subunit beta; p55; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P07237)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol P4HB 
HGNC aliases "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase; thyroid hormone binding protein p55)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase-associated 1)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide" 
HGNC name prolyl 4-hydroxylase, beta polypeptide 
Transcript feature NA
Genomic location  G-integra Chromosome 17
Location 17q25.3
Position 79801888- 79818375
Strand -
Gene structure 11 exons
 
TOP 1-10 11-13 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000492591
Accession number AK297967.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Protein disulfide-isomerase; PDI; EC=5.3.4.1; Cellular thyroid hormone-binding protein; Prolyl 4-hydroxylase subunit beta; p55; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P07237)  [Identity/coverage = 99.797%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol P4HB 
HGNC aliases "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase; thyroid hormone binding protein p55)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase-associated 1)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide" 
HGNC name prolyl 4-hydroxylase, beta polypeptide 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 17
Location 17q25.3
Position 79801410- 79818410
Strand -
Gene structure 12 exons
 
TOP 1-10 11-13 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000191088
Accession number J02783.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Protein disulfide-isomerase; PDI; EC=5.3.4.1; Cellular thyroid hormone-binding protein; Prolyl 4-hydroxylase subunit beta; p55; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P07237)  [Identity/coverage = 99.016%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol P4HB 
HGNC aliases "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase; thyroid hormone binding protein p55)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase-associated 1)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide" 
HGNC name prolyl 4-hydroxylase, beta polypeptide 
Transcript feature NA
Genomic location  G-integra Chromosome 17
Location 17q25.3
Position 79801037- 79818410
Strand -
Gene structure 11 exons
 
TOP 1-10 11-13 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000491705
Accession number AK297081.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Protein disulfide-isomerase; PDI; EC=5.3.4.1; Cellular thyroid hormone-binding protein; Prolyl 4-hydroxylase subunit beta; p55; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P07237)  [Identity/coverage = 99.557%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol P4HB 
HGNC aliases "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase; thyroid hormone binding protein p55)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase-associated 1)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide" 
HGNC name prolyl 4-hydroxylase, beta polypeptide 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 17
Location 17q25.3
Position 79801349- 79818441
Strand -
Gene structure 11 exons
 
TOP 1-10 11-13 LAST 
Locus member number 10
H-Inv ID Transcript viewHIT000321117
Accession number X05130.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Protein disulfide-isomerase; PDI; EC=5.3.4.1; Cellular thyroid hormone-binding protein; Prolyl 4-hydroxylase subunit beta; p55; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P07237)  [Identity/coverage = 98.228%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol P4HB 
HGNC aliases "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase; thyroid hormone binding protein p55)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase-associated 1)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide" 
HGNC name prolyl 4-hydroxylase, beta polypeptide 
Transcript feature NA
Genomic location  G-integra Chromosome 17
Location 17q25.3
Position 79801490- 79818377
Strand -
Gene structure 11 exons
 
TOP 1-10 11-13 LAST 
Locus member number 11
H-Inv ID Transcript viewHIT000495185
Accession number AK300561.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Protein disulfide-isomerase; PDI; EC=5.3.4.1; Cellular thyroid hormone-binding protein; Prolyl 4-hydroxylase subunit beta; p55; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P07237)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol P4HB 
HGNC aliases "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase; thyroid hormone binding protein p55)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase-associated 1)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide" 
HGNC name prolyl 4-hydroxylase, beta polypeptide 
Transcript feature NA
Genomic location  G-integra Chromosome 17
Location 17q25.3
Position 79801857- 79818442
Strand -
Gene structure 10 exons
 
TOP 1-10 11-13 LAST 
Locus member number 12
H-Inv ID Transcript viewHIT000036744
Accession number BC014504.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Protein disulfide-isomerase; PDI; EC=5.3.4.1; Cellular thyroid hormone-binding protein; Prolyl 4-hydroxylase subunit beta; p55; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P07237)  [Identity/coverage = 99.267%/57.68%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol P4HB 
HGNC aliases "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase; thyroid hormone binding protein p55)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase-associated 1)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide" 
HGNC name prolyl 4-hydroxylase, beta polypeptide 
Transcript feature NA
Genomic location  G-integra Chromosome 17
Location 17q25.3
Position 79801042- 79805203
Strand -
Gene structure 7 exons
 
TOP 1-10 11-13 LAST 
Locus member number 13
H-Inv ID Transcript viewHIT000321239
Accession number X07077.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Protein disulfide-isomerase; PDI; EC=5.3.4.1; Cellular thyroid hormone-binding protein; Prolyl 4-hydroxylase subunit beta; p55; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P07237)  [Identity/coverage = 99.074%/42.52%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol P4HB 
HGNC aliases "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase; thyroid hormone binding protein p55)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase-associated 1)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide" 
HGNC name prolyl 4-hydroxylase, beta polypeptide 
Transcript feature NA
Genomic location  G-integra Chromosome 17
Location 17q25.3
Position 79801045- 79804484
Strand -
Gene structure 5 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Cassette;  Internal acceptor site;  Internal donor site;  Retained intron; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000020793;  Splicing isoformHIT000492591;  Splicing isoformHIT000040847;  Splicing isoformHIT000491705; 
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra;  cDNA multiple alignmentcDNA-genome multiple alignment;  ORF multiple alignmentORF multiple alignment; 

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0014256
Representative H-Inv ID Representative H-Inv IDHIT000040847
Accession number BC029617.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Protein disulfide-isomerase; PDI; EC=5.3.4.1; Cellular thyroid hormone-binding protein; Prolyl 4-hydroxylase subunit beta; p55; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P07237)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol P4HB 
HGNC aliases "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase; thyroid hormone binding protein p55)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase-associated 1)", "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide" 
HGNC name prolyl 4-hydroxylase, beta polypeptide 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000075721
No. of interaction 5
Interaction partner(s) HIP000023616;  HIP000081588;  HIP000092109;  HIP000101937;  HIP000105556; 
BIND 145680; 
DIP 112360E;  112758E;  112835E;  112970E;  113049E;  113667E;  113781E;  113982E;  114365E;  114496E;  115730E;  117296E; 
MINT MINT-13883;  MINT-15901;  MINT-3319377;  MINT-4053260;  MINT-63421;  MINT-63422;  MINT-7718402;  MINT-7718413;  MINT-7718424;  MINT-7718461;  MINT-8075120;  MINT-8075141;  MINT-8075157;  MINT-8091005;  MINT-8091054; 
HPRD 00146;  00279;  00357;  00362;  00363;  01199;  01359;  01453;  01780;  01782;  03062;  03183;  03465;  03625;  03722;  04122;  04242;  04881;  05127;  05428;  05437;  05440;  05639;  05935;  06568;  06786;  09212;  11862;  13278;  13279;  16051;  16246;  16413; 
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:5034; 
KEGG GENES KEGG GENES(5034); 
GeneCard GeneCardP4HB;  *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases; 
Related H-InvDB links G-integraG-integra;  PPI viewerPPI view;  H-DBASH-DBAS;  Gene familyGene family;  Similarity Search ToolSimilarity search tool;  TACTTACT; 
Gene expression information   H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator		 AceGene NA
Affymetrix
GeneChip		 HG-Focus 200656_s_at; 
HG-U133 200656_s_at; 
HG-U133A 200656_s_at; 
HG-U133A_2 200656_s_at; 
HG-U133B NA
HG-U133_Plus_2 200656_s_at; 
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 3774250;  3774251;  3774258;  3774259;  3774260;  3774276;  4040494;  4041349;  4041350;  4041351;  4041358;  4041359;  4041373; 
HuGeneFL X05130_s_at; 
Agilent Human 1A Oligo Microarray:PGID215 A_23_P107412; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P107412; 
Related H-InvDB links H-ANGELH-ANGEL;  DNAProbeLocatorDNAProbeLocator;