H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Inv cluster ID: HIX0016000 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Potassium voltage-gated channel subfamily KQT member 2 isoform e.
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0016000
Genomic location  G-integra Help Chromosome 20
Location 20q13.33
Position 62031568- 62103993
Strand -
Antisense cluster ID(s) HIX0040684 overlap at CDSs (all)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:3785
KEGG GENES KEGG GENES(3785)
GeneCard GeneCardKCNQ2*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000101774HIT000029846HIT000099963HIT000325871HIT000063124HIT000065983HIT000069620HIT000488351HIT000252234HIT000389240
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-10 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000101774
Accession number D82346.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Potassium voltage-gated channel subfamily KQT member 2 isoform e.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_742107)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol KCNQ2 
HGNC aliases "potassium voltage-gated channel, KQT-like subfamily, member 2" 
HGNC name potassium channel, voltage gated KQT-like subfamily Q, member 2 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 20
Location 20q13.33
Position 62065032- 62103993
Strand -
Gene structure 8 exons
 
TOP 1-10 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000029846
Accession number BC000699.2
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Potassium voltage-gated channel subfamily KQT member 2 isoform e.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_742107)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol KCNQ2 
HGNC aliases "potassium voltage-gated channel, KQT-like subfamily, member 2" 
HGNC name potassium channel, voltage gated KQT-like subfamily Q, member 2 
Transcript feature NA
Genomic location  G-integra Chromosome 20
Location 20q13.33
Position 62065036- 62103859
Strand -
Gene structure 8 exons
 
TOP 1-10 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000099963
Accession number BT007043.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Potassium voltage-gated channel subfamily KQT member 2 isoform e.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_742107)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol KCNQ2 
HGNC aliases "potassium voltage-gated channel, KQT-like subfamily, member 2" 
HGNC name potassium channel, voltage gated KQT-like subfamily Q, member 2 
Transcript feature NA
Genomic location  G-integra Chromosome 20
Location 20q13.33
Position 62065099- 62103816
Strand -
Gene structure 8 exons
 
TOP 1-10 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000325871
Accession number Y15065.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Potassium voltage-gated channel subfamily KQT member 2 isoform e.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_742107)  [Identity/coverage = 100.0%/94.91%] to Homo sapiens protein.
Gene symbol/name HGNC symbol KCNQ2 
HGNC aliases "potassium voltage-gated channel, KQT-like subfamily, member 2" 
HGNC name potassium channel, voltage gated KQT-like subfamily Q, member 2 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 20
Location 20q13.33
Position 62031568- 62103858
Strand -
Gene structure 17 exons
 
TOP 1-10 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000063124
Accession number AF033348.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Potassium voltage-gated channel subfamily KQT member 2; KQT-like 2; Neuroblastoma-specific potassium channel subunit alpha KvLQT2; Voltage-gated potassium channel subunit Kv7.2;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (O43526)  [Identity/coverage = 99.885%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol KCNQ2 
HGNC aliases "potassium voltage-gated channel, KQT-like subfamily, member 2" 
HGNC name potassium channel, voltage gated KQT-like subfamily Q, member 2 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 20
Location 20q13.33
Position 62037490- 62103943
Strand -
Gene structure 17 exons
 
TOP 1-10 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000065983
Accession number AF074247.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Potassium voltage-gated channel subfamily KQT member 2 isoform b.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_742104)  [Identity/coverage = 99.883%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol KCNQ2 
HGNC aliases "potassium voltage-gated channel, KQT-like subfamily, member 2" 
HGNC name potassium channel, voltage gated KQT-like subfamily Q, member 2 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 20
Location 20q13.33
Position 62037542- 62103991
Strand -
Gene structure 16 exons
 
TOP 1-10 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000069620
Accession number AF110020.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Potassium voltage-gated channel subfamily KQT member 2 isoform d.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_742106)  [Identity/coverage = 99.762%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol KCNQ2 
HGNC aliases "potassium voltage-gated channel, KQT-like subfamily, member 2" 
HGNC name potassium channel, voltage gated KQT-like subfamily Q, member 2 
Transcript feature NA
Genomic location  G-integra Chromosome 20
Location 20q13.33
Position 62037819- 62103862
Strand -
Gene structure 16 exons
 
TOP 1-10 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000488351
Accession number AK293727.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Potassium voltage-gated channel subfamily KQT member 2 isoform d.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_742106)  [Identity/coverage = 99.759%/49.35%] to Homo sapiens protein.
Gene symbol/name HGNC symbol KCNQ2 
HGNC aliases "potassium voltage-gated channel, KQT-like subfamily, member 2" 
HGNC name potassium channel, voltage gated KQT-like subfamily Q, member 2 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 20
Location 20q13.33
Position 62055287- 62103942
Strand -
Gene structure 11 exons
 
TOP 1-10 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000252234
Accession number AY358189.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Gene symbol/name HGNC symbol KCNQ2 
HGNC aliases "potassium voltage-gated channel, KQT-like subfamily, member 2" 
HGNC name potassium channel, voltage gated KQT-like subfamily Q, member 2 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 20
Location 20q13.33
Position 62067353- 62071639
Strand -
Gene structure 3 exons
 
TOP 1-10 LAST 
Locus member number 10
H-Inv ID Transcript viewHIT000389240
Accession number BC127262.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol KCNQ2 
HGNC aliases "potassium voltage-gated channel, KQT-like subfamily, member 2" 
HGNC name potassium channel, voltage gated KQT-like subfamily Q, member 2 
Transcript feature NA
Genomic location  G-integra Chromosome 20
Location 20q13.33
Position 62032758- 62033233
Strand -
Gene structure 1 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Cassette;  Internal donor site; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000101774Splicing isoformHIT000065983Splicing isoformHIT000063124Splicing isoformHIT000488351Splicing isoformHIT000325871Splicing isoformHIT000252234
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0016000
Representative H-Inv ID Representative H-Inv IDHIT000101774
Accession number D82346.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Potassium voltage-gated channel subfamily KQT member 2 isoform e.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_742107)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol KCNQ2 
HGNC aliases "potassium voltage-gated channel, KQT-like subfamily, member 2" 
HGNC name potassium channel, voltage gated KQT-like subfamily Q, member 2 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000112821
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:3785
KEGG GENES KEGG GENES(3785)
GeneCard GeneCardKCNQ2*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Gene familyGene family;  Similarity Search ToolSimilarity search tool TACTTACT
Gene expression information   H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL neural; 
Probe
information DNAProbeLocator
AceGene AGhsB100214;  AGhsC241122; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 210508_s_at; 
HG-U133A 210508_s_at; 
HG-U133A_2 210508_s_at; 
HG-U133B NA
HG-U133_Plus_2 210508_s_at; 
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 3913858;  3913859;  3913860;  3913869;  3913870;  3913875;  3913876;  3913877;  3913879;  3913888;  3913889;  3913890;  3913891; 
HuGeneFL D82346_at; 
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 A_23_P351204; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:27-May-2015
Disease relation Disease name: Epilepsy, benign, neonatal, type 1 (121200);  Disease name: Myokymia with neonatal epilepsy (606437); 
Related information in OMIM OMIM ID:  602235;  Title: POTASSIUM CHANNEL, VOLTAGE-GATED, KQT-LIKE SUBFAMILY, MEMBER 2
Co-localized orphan diseases NA
Disease related mutation MutationView:  602235
JRE-1.4.0 or later is required.Download JRE at Sun's web site.
Co-occurred words and phrases with this gene name in PubMed (LEGENDA) LEGENDA Gene name Entrez Gene ID:(3785); 
Disease Entrez Gene ID:(3785); 
Gene function Entrez Gene ID:(3785); 
Substance Entrez Gene ID:(3785); 
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo ViewerLEGENDALEGENDA