H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Inv cluster ID: HIX0020005 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Elongation factor 1-alpha 1; EF-1-alpha-1; Elongation factor Tu; EF-Tu; Eukaryotic elongation factor 1 A-1; eEF1A-1; Leukocyte receptor cluster member 7;
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0020005
Genomic location  G-integra Help Chromosome 9
Location 9q34.13
Position 135894810- 135896556
Strand +
Antisense cluster ID(s) NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:1915
KEGG GENES KEGG GENES(1915)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000014657HIT000334988HIT000495546HIT000342123_04HIT000074047HIT000101204_06HIT000452629_15HIT000440922_06HIT000452714_10
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-9 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000014657
Accession number AK058051.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Elongation factor 1-alpha 1; EF-1-alpha-1; Elongation factor Tu; EF-Tu; Eukaryotic elongation factor 1 A-1; eEF1A-1; Leukocyte receptor cluster member 7;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P68104)  [Identity/coverage = 99.239%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 9
Location 9q34.13
Position 135894810- 135896553
Strand +
Gene structure 2 exons
 
TOP 1-9 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000334988
Accession number BC094687.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Elongation factor 1-alpha 1; EF-1-alpha-1; Elongation factor Tu; EF-Tu; Eukaryotic elongation factor 1 A-1; eEF1A-1; Leukocyte receptor cluster member 7;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P68104)  [Identity/coverage = 100.0%/77.71%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 9
Location 9q34.13
Position 135894833- 135896554
Strand +
Gene structure 2 exons
 
TOP 1-9 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000495546
Accession number AK300922.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Elongation factor 1-alpha 1; EF-1-alpha-1; Elongation factor Tu; EF-Tu; Eukaryotic elongation factor 1 A-1; eEF1A-1; Leukocyte receptor cluster member 7;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P68104)  [Identity/coverage = 99.279%/90.04%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 9
Location 9q34.13
Position 135894815- 135896400
Strand +
Gene structure 2 exons
 
TOP 1-9 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000342123_04
Accession number DQ185041.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Putative elongation factor 1-alpha-like 3; EF-1-alpha-like 3; Eukaryotic elongation factor 1 A-like 3; eEF1A-like 3; Eukaryotic translation elongation factor 1 alpha-1 pseudogene 5;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q5VTE0)  [Identity/coverage = 100.0%/20.13%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q34.13
Position 135895980- 135896419
Strand +
Gene structure 1 exons
 
TOP 1-9 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000074047
Accession number AF211972.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical short protein.
Similarity category  Help Category: Hypothetical short protein(Category VI).
Hypothetical short protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q34.13
Position 135895353- 135896554
Strand +
Gene structure 2 exons
 
TOP 1-9 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000101204_06
Accession number D28375.1
CAGE tag ID NA
EST ID NA
Coding potential Non-protein-coding; 
Definition Non-protein-coding transcript, uncharacterized transcript.
Similarity category  Help Category: Non-protein coding transcript.
NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q34.13
Position 135894810- 135894878
Strand +
Gene structure 1 exons
 
TOP 1-9 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000452629_15
Accession number DQ586098.1
CAGE tag ID NA
EST ID NA
Coding potential Non-protein-coding; 
Definition Non-protein-coding transcript, uncharacterized transcript.
Similarity category  Help Category: Non-protein coding transcript.
NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q34.13
Position 135895223- 135895253
Strand +
Gene structure 1 exons
 
TOP 1-9 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000440922_06
Accession number DQ574391.1
CAGE tag ID NA
EST ID NA
Coding potential Non-protein-coding; 
Definition Non-protein-coding transcript, uncharacterized transcript.
Similarity category  Help Category: Non-protein coding transcript.
NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q34.13
Position 135896126- 135896155
Strand +
Gene structure 1 exons
 
TOP 1-9 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000452714_10
Accession number DQ586183.1
CAGE tag ID NA
EST ID NA
Coding potential Non-protein-coding; 
Definition Non-protein-coding transcript, uncharacterized transcript.
Similarity category  Help Category: Non-protein coding transcript.
NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 9
Location 9q34.13
Position 135896144- 135896173
Strand +
Gene structure 1 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  3' terminal AS; 
Position of alternative splicing isoforms Retained intron; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000495546Splicing isoformHIT000334988Splicing isoformHIT000014657
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0020005
Representative H-Inv ID Representative H-Inv IDHIT000014657
Accession number AK058051.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Elongation factor 1-alpha 1; EF-1-alpha-1; Elongation factor Tu; EF-Tu; Eukaryotic elongation factor 1 A-1; eEF1A-1; Leukocyte receptor cluster member 7;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P68104)  [Identity/coverage = 99.239%/100.0%] to Homo sapiens (Human). protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000057282
No. of interaction 5
Interaction partner(s) HIP000055203HIP000075826HIP000086861HIP000100718HIP000109022
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:1915
KEGG GENES KEGG GENES(1915)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Gene familyGene family;  Similarity Search ToolSimilarity search tool TACTTACT