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H-Inv cluster ID: HIX0023539 Created date: 26-Mar-2013 Last modified: 27-May-2015 Definition: Opsin-3; Encephalopsin; Panopsin;

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Gene structure

H-Inv cluster ID		HIX0023539
Genomic location	Chromosome	1
	Location	1q43
	Position	241753404- 241840678
	Strand	-
Antisense cluster ID(s)		HIX0001738	overlap at CDSs (all)
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	Entrez Gene ID:23596;
	KEGG GENES	KEGG GENES(23596);
	GeneCard	OPN3;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Cluster member H-Inv ID(s)		HIT000076716;  HIT000051805;  HIT000260532;  HIT000071135;  HIT000429173;  HIT000333925;  HIT000265096;  HIT000099460;
Additional cluster member candidate(s)		NA
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome multiple alignment;  ORF multiple alignment;

 

TOP 1-8 LAST

Cluster member (s)

Locus member number		1
H-Inv ID		HIT000076716
Accession number		AF303588.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Opsin-3; Encephalopsin; Panopsin;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (Q9H1Y3)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	OPN3
	HGNC aliases	"encephalopsin"
	HGNC name	opsin 3
Transcript feature		Representative transcript;  Splicing isoform
Genomic location	Chromosome	1
	Location	1q43
	Position	241756508- 241803648
	Strand	-
Gene structure		4 exons

 

TOP 1-8 LAST

Locus member number		2
H-Inv ID		HIT000051805
Accession number		BC036773.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Opsin-3; Encephalopsin; Panopsin;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (Q9H1Y3)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	OPN3
	HGNC aliases	"encephalopsin"
	HGNC name	opsin 3
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1q43
	Position	241756915- 241803653
	Strand	-
Gene structure		4 exons

 

TOP 1-8 LAST

Locus member number		3
H-Inv ID		HIT000260532
Accession number		BC062622.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Opsin-3; Encephalopsin; Panopsin;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (Q9H1Y3)  [Identity/coverage = 99.713%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	OPN3
	HGNC aliases	"encephalopsin"
	HGNC name	opsin 3
Transcript feature		Splicing isoform
Genomic location	Chromosome	1
	Location	1q43
	Position	241756915- 241803642
	Strand	-
Gene structure		4 exons

 

TOP 1-8 LAST

Locus member number		4
H-Inv ID		HIT000071135
Accession number		AF140242.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Opsin-3; Encephalopsin; Panopsin;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (Q9H1Y3)  [Identity/coverage = 98.263%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	OPN3
	HGNC aliases	"encephalopsin"
	HGNC name	opsin 3
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1q43
	Position	241756915- 241803611
	Strand	-
Gene structure		4 exons

 

TOP 1-8 LAST

Locus member number		5
H-Inv ID		HIT000429173
Accession number		AK310307.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Opsin-3; Encephalopsin; Panopsin;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (Q9H1Y3)  [Identity/coverage = 98.851%/43.28%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	OPN3
	HGNC aliases	"encephalopsin"
	HGNC name	opsin 3
Transcript feature		Splicing isoform
Genomic location	Chromosome	1
	Location	1q43
	Position	241757581- 241764480
	Strand	-
Gene structure		4 exons

 

TOP 1-8 LAST

Locus member number		6
H-Inv ID		HIT000333925
Accession number		BC026242.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Opsin-3; Encephalopsin; Panopsin;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (Q9H1Y3)  [Identity/coverage = 99.624%/92.79%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	OPN3
	HGNC aliases	"encephalopsin"
	HGNC name	opsin 3
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1q43
	Position	241756914- 241803692
	Strand	-
Gene structure		3 exons

 

TOP 1-8 LAST

Locus member number		7
H-Inv ID		HIT000265096
Accession number		BC073872.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Opsin-3; Encephalopsin; Panopsin;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (Q9H1Y3)  [Identity/coverage = 100.0%/12.44%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	OPN3
	HGNC aliases	"encephalopsin"
	HGNC name	opsin 3
Transcript feature		Splicing isoform
Genomic location	Chromosome	1
	Location	1q43
	Position	241756905- 241803626
	Strand	-
Gene structure		3 exons

 

TOP 1-8 LAST

Locus member number		8
H-Inv ID		HIT000099460
Accession number		BC051900.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Opsin-3; Encephalopsin; Panopsin;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (Q9H1Y3)  [Identity/coverage = 100.0%/16.67%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	OPN3
	HGNC aliases	"encephalopsin"
	HGNC name	opsin 3
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1q43
	Position	241756917- 241803575
	Strand	-
Gene structure		3 exons

Alternative splicing (AS) information

Pattern of alternative splicing isoforms	5' terminal AS;  Internal AS;
Position of alternative splicing isoforms	Cassette;  Internal donor site;
Alternative splicing isoform H-Inv ID(s)	HIT000429173;  HIT000265096;  HIT000260532;  HIT000076716;
Related H-InvDB links	H-DBAS;  G-integra;  cDNA-genome multiple alignment;  ORF multiple alignment;

Gene function information

H-Inv cluster ID		HIX0023539
Representative H-Inv ID		HIT000076716
Accession number		AF303588.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Opsin-3; Encephalopsin; Panopsin;
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (Q9H1Y3)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene family/group	H-Inv gene family/group ID	NA
	Gene family/group name	NA
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	OPN3
	HGNC aliases	"encephalopsin"
	HGNC name	opsin 3
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000116985
	No. of interaction	NA
	Interaction partner(s)	NA
	BIND	NA
	DIP	NA
	MINT	NA
	HPRD	NA
	IntAct	NA
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	Entrez Gene ID:23596;
	KEGG GENES	KEGG GENES(23596);
	GeneCard	OPN3;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Related H-InvDB links		G-integra;  PPI view;  H-DBAS;  Gene family;  Similarity search tool;  TACT;

Gene expression information

Last modified:27-May-2015

Tissue-specific expression			NA
Probe information	AceGene		NA
	Affymetrix GeneChip	HG-Focus	NA
		HG-U133	NA
		HG-U133A	NA
		HG-U133A_2	NA
		HG-U133B	NA
		HG-U133_Plus_2	NA
		HG-U95	NA
		HG-U95A	NA
		HG-U95B	NA
		HG-U95C	NA
		HG-U95D	NA
		HG-U95E	NA
		HG-U95Av2	NA
		HuEx-1_0	2388141;  2388142;  2463486;  2463491;  2463492;  2463495;  2463496;  2463510;  2463511;  2463512;
		HuGeneFL	NA
	Agilent	Human 1A Oligo Microarray:PGID215	NA
		Whole Human Genome Oligo Microarray:PGID247	NA
Related H-InvDB links			H-ANGEL;  DNAProbeLocator;