H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Inv cluster ID: HIX0023932 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to Integrin alpha-6; CD49 antigen-like family member F; VLA-6; AltName: CD_antigen=CD49f; Contains: Integrin alpha-6 heavy chain; Contains: Integrin alpha-6 light chain; Precursor;
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0023932
Genomic location  G-integra Help Chromosome 2
Location 2q31.1
Position 173292082- 173371181
Strand +
Antisense cluster ID(s) NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:3655
KEGG GENES KEGG GENES(3655)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000321841HIT000054270HIT000491120HIT000500473HIT000500474HIT000322326HIT000328777HIT000489060HIT000259146HIT000086718HIT000430561HIT000426643HIT000216121HIT000216122HIT000393904HIT000395517HIT000395509HIT000395539HIT000079091
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-10 11-19 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000321841
Accession number X53586.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Integrin alpha-6; CD49 antigen-like family member F; VLA-6; AltName: CD_antigen=CD49f; Contains: Integrin alpha-6 heavy chain; Contains: Integrin alpha-6 light chain; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P23229)  [Identity/coverage = 99.725%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q31.1
Position 173292370- 173371010
Strand +
Gene structure 26 exons
 
TOP 1-10 11-19 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000054270
Accession number BX537483.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Integrin alpha-6 isoform b precursor.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_000201)  [Identity/coverage = 100.0%/3.26%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q31.1
Position 173366058- 173370921
Strand +
Gene structure 1 exons
 
TOP 1-10 11-19 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000491120
Accession number AK296496.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Integrin alpha-6; CD49 antigen-like family member F; VLA-6; AltName: CD_antigen=CD49f; Contains: Integrin alpha-6 heavy chain; Contains: Integrin alpha-6 light chain; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P23229)  [Identity/coverage = 99.805%/94.6%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q31.1
Position 173292146- 173369262
Strand +
Gene structure 26 exons
 
TOP 1-10 11-19 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000500473
Accession number BC136455.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Integrin alpha-6 isoform a precursor.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001073286)  [Identity/coverage = 99.817%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q31.1
Position 173292409- 173369249
Strand +
Gene structure 26 exons
 
TOP 1-10 11-19 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000500474
Accession number BC136456.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Integrin alpha-6 isoform a precursor.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001073286)  [Identity/coverage = 99.817%/100.0%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q31.1
Position 173292409- 173369249
Strand +
Gene structure 26 exons
 
TOP 1-10 11-19 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000322326
Accession number X59512.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Integrin alpha-6; CD49 antigen-like family member F; VLA-6; AltName: CD_antigen=CD49f; Contains: Integrin alpha-6 heavy chain; Contains: Integrin alpha-6 light chain; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P23229)  [Identity/coverage = 99.814%/98.85%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q31.1
Position 173292535- 173369100
Strand +
Gene structure 26 exons
 
TOP 1-10 11-19 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000328777
Accession number AB208842.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Integrin alpha-6 isoform a precursor.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001073286)  [Identity/coverage = 100.0%/96.98%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q31.1
Position 173292615- 173371002
Strand +
Gene structure 25 exons
 
TOP 1-10 11-19 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000489060
Accession number AK294436.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Integrin alpha-6; CD49 antigen-like family member F; VLA-6; AltName: CD_antigen=CD49f; Contains: Integrin alpha-6 heavy chain; Contains: Integrin alpha-6 light chain; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P23229)  [Identity/coverage = 99.884%/76.55%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q31.1
Position 173337522- 173369241
Strand +
Gene structure 22 exons
 
TOP 1-10 11-19 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000259146
Accession number BC050585.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Integrin alpha-6 isoform a precursor.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001073286)  [Identity/coverage = 100.0%/65.9%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q31.1
Position 173339786- 173370987
Strand +
Gene structure 20 exons
 
TOP 1-10 11-19 LAST 
Locus member number 10
H-Inv ID Transcript viewHIT000086718
Accession number BC007002.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Integrin alpha-6; CD49 antigen-like family member F; VLA-6; AltName: CD_antigen=CD49f; Contains: Integrin alpha-6 heavy chain; Contains: Integrin alpha-6 light chain; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P23229)  [Identity/coverage = 99.078%/61.06%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q31.1
Position 173292317- 173351831
Strand +
Gene structure 14 exons
 
TOP 1-10 11-19 LAST 
Locus member number 11
H-Inv ID Transcript viewHIT000430561
Accession number AK311695.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Integrin alpha-6 isoform b precursor.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_000201)  [Identity/coverage = 100.0%/26.47%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q31.1
Position 173292082- 173339705
Strand +
Gene structure 7 exons
 
TOP 1-10 11-19 LAST 
Locus member number 12
H-Inv ID Transcript viewHIT000426643
Accession number AK307777.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Integrin alpha-6; CD49 antigen-like family member F; VLA-6; AltName: CD_antigen=CD49f; Contains: Integrin alpha-6 heavy chain; Contains: Integrin alpha-6 light chain; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P23229)  [Identity/coverage = 98.69%/20.27%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q31.1
Position 173354294- 173369438
Strand +
Gene structure 6 exons
 
TOP 1-10 11-19 LAST 
Locus member number 13
H-Inv ID Transcript viewHIT000216121
Accession number S66196.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Integrin alpha-6 isoform b precursor.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_000201)  [Identity/coverage = 100.0%/13.7%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q31.1
Position 173355949- 173368883
Strand +
Gene structure 5 exons
 
TOP 1-10 11-19 LAST 
Locus member number 14
H-Inv ID Transcript viewHIT000216122
Accession number S66213.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Integrin alpha-6; CD49 antigen-like family member F; VLA-6; AltName: CD_antigen=CD49f; Contains: Integrin alpha-6 heavy chain; Contains: Integrin alpha-6 light chain; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P23229)  [Identity/coverage = 100.0%/14.6%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q31.1
Position 173355949- 173369008
Strand +
Gene structure 4 exons
 
TOP 1-10 11-19 LAST 
Locus member number 15
H-Inv ID Transcript viewHIT000393904
Accession number DQ858220.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Integrin alpha-6 isoform a precursor.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001073286)  [Identity/coverage = 100.0%/11.92%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q31.1
Position 173356151- 173368989
Strand +
Gene structure 3 exons
 
TOP 1-10 11-19 LAST 
Locus member number 16
H-Inv ID Transcript viewHIT000395517
Accession number EF491790.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Integrin alpha-6; CD49 antigen-like family member F; VLA-6; AltName: CD_antigen=CD49f; Contains: Integrin alpha-6 heavy chain; Contains: Integrin alpha-6 light chain; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P23229)  [Identity/coverage = 100.0%/6.64%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q31.1
Position 173335702- 173337597
Strand +
Gene structure 2 exons
 
TOP 1-10 11-19 LAST 
Locus member number 17
H-Inv ID Transcript viewHIT000395509
Accession number EF491782.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Integrin alpha-6; CD49 antigen-like family member F; VLA-6; AltName: CD_antigen=CD49f; Contains: Integrin alpha-6 heavy chain; Contains: Integrin alpha-6 light chain; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P23229)  [Identity/coverage = 100.0%/4.96%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q31.1
Position 173335760- 173337597
Strand +
Gene structure 2 exons
 
TOP 1-10 11-19 LAST 
Locus member number 18
H-Inv ID Transcript viewHIT000395539
Accession number EF491812.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Integrin alpha-6; CD49 antigen-like family member F; VLA-6; AltName: CD_antigen=CD49f; Contains: Integrin alpha-6 heavy chain; Contains: Integrin alpha-6 light chain; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P23229)  [Identity/coverage = 100.0%/6.9%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q31.1
Position 173337573- 173338970
Strand +
Gene structure 2 exons
 
TOP 1-10 11-19 LAST 
Locus member number 19
H-Inv ID Transcript viewHIT000079091
Accession number AF401206.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Conserved hypothetical protein.
Similarity category  Help Category: Conserved hypothetical protein(Category IV).
Conserved hypothetical protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q31.1
Position 173368848- 173368990
Strand +
Gene structure 1 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Cassette;  Mutually exclusive; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000321841Splicing isoformHIT000328777Splicing isoformHIT000491120
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0023932
Representative H-Inv ID Representative H-Inv IDHIT000321841
Accession number X53586.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Integrin alpha-6; CD49 antigen-like family member F; VLA-6; AltName: CD_antigen=CD49f; Contains: Integrin alpha-6 heavy chain; Contains: Integrin alpha-6 light chain; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P23229)  [Identity/coverage = 99.725%/100.0%] to Homo sapiens (Human). protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000021507
No. of interaction 12
Interaction partner(s) HIP000029097HIP000029955HIP000029955HIP000068941HIP000070198HIP000080650HIP000102365HIP000102365HIP000166291HIP000166291HIP000169506HIP000169506
BIND 24515;  24516;  24801; 
DIP NA
MINT NA
HPRD 00150;  00223;  00252;  00628;  00946;  01038;  01121;  01430;  01501;  03150;  03180;  03763;  04091;  05462;  08985;  09004; 
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:3655
KEGG GENES KEGG GENES(3655)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Gene familyGene family;  Similarity Search ToolSimilarity search tool TACTTACT
Gene expression information   H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsA240511;  AGhsB140306; 
Affymetrix
GeneChip
HG-Focus 201656_at; 
HG-U133 201656_at;  215177_s_at;  229643_at; 
HG-U133A 201656_at;  215177_s_at; 
HG-U133A_2 201656_at;  215177_s_at; 
HG-U133B 229643_at; 
HG-U133_Plus_2 201656_at;  215177_s_at;  229643_at; 
HG-U95 2077_at;  33410_at;  33411_g_at;  41266_at;  64003_at;  67243_at;  78871_at; 
HG-U95A 2077_at;  33410_at;  33411_g_at;  41266_at; 
HG-U95B NA
HG-U95C 64003_at; 
HG-U95D NA
HG-U95E 67243_at;  78871_at; 
HG-U95Av2 NA
HuEx-1_0 2515628;  2515629;  2515643;  2515645;  2515646;  2515650;  2515654;  2515655;  2515656;  2515657;  2515658;  2515659;  2515661;  2515662;  2515663;  2515664;  2515665;  2515666;  2515667;  2515668;  2515669;  2515670;  2515673;  2515674;  2515675;  2515677;  2515679;  2515683;  2515685;  2515686;  2515687;  2587162;  2587163;  2587188;  2587193;  2587201;  2587205;  2587206; 
HuGeneFL X53586_rna1_at; 
Agilent Human 1A Oligo Microarray:PGID215 A_23_P210176; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P210176; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator

Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:27-May-2015
Disease relation Disease name: Epidermolysis bullosa, junctional, with pyloric stenosis (226730); 
Related information in OMIM OMIM ID:  147556;  Title: INTEGRIN, ALPHA-6
Co-localized orphan diseases NA
Disease related mutation MutationView:  147556
JRE-1.4.0 or later is required.Download JRE at Sun's web site.
Co-occurred words and phrases with this gene name in PubMed (LEGENDA) LEGENDA Gene name Entrez Gene ID:(3655); 
Disease Entrez Gene ID:(3655); 
Gene function Entrez Gene ID:(3655); 
Substance Entrez Gene ID:(3655); 
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo ViewerLEGENDALEGENDA