H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Inv cluster ID: HIX0026769 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Solute carrier family 12 member 1; Bumetanide-sensitive sodium-(potassium)-chloride cotransporter 2; Kidney-specific Na-K-Cl symporter;
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0026769
Genomic location  G-integra Help Chromosome 15
Location 15q21.1
Position 48498498- 48596275
Strand +
Antisense cluster ID(s) NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:6557
KEGG GENES KEGG GENES(6557)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000469077HIT000056131HIT000055714HIT000052329HIT000220528HIT000492936HIT000492899HIT000059057HIT000059058HIT000059059
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-10 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000469077
Accession number EF559316.2
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Solute carrier family 12 member 1; Bumetanide-sensitive sodium-(potassium)-chloride cotransporter 2; Kidney-specific Na-K-Cl symporter;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q13621)  [Identity/coverage = 99.909%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Representative H-Inv IDRepresentative transcript; 
Genomic location  G-integra Chromosome 15
Location 15q21.1
Position 48499903- 48595194
Strand +
Gene structure 26 exons
 
TOP 1-10 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000056131
Accession number BX647484.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Solute carrier family 12 member 3; Na-Cl symporter; Thiazide-sensitive sodium-chloride cotransporter;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P59158)  [Identity/coverage = 55.131%/92.22%] to Mus musculus (Mouse). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 15
Location 15q21.1
Position 48514525- 48596273
Strand +
Gene structure 23 exons
 
TOP 1-10 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000055714
Accession number BX647067.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Solute carrier family 12 member 1; Bumetanide-sensitive sodium-(potassium)-chloride cotransporter 2; Kidney-specific Na-K-Cl symporter;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q13621)  [Identity/coverage = 99.304%/78.43%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 15
Location 15q21.1
Position 48516523- 48596275
Strand +
Gene structure 22 exons
 
TOP 1-10 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000052329
Accession number BC040138.2
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Solute carrier family 12 member 1; Bumetanide-sensitive sodium-(potassium)-chloride cotransporter 2; Kidney-specific Na-K-Cl symporter;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q13621)  [Identity/coverage = 98.289%/37.22%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q21.1
Position 48499731- 48529545
Strand +
Gene structure 9 exons
 
TOP 1-10 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000220528
Accession number U58130.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Solute carrier family 12 member 1; Bumetanide-sensitive sodium-(potassium)-chloride cotransporter 2; Kidney-specific Na-K-Cl symporter;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q13621)  [Identity/coverage = 99.272%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q21.1
Position 48499898- 48595125
Strand +
Gene structure 26 exons
 
TOP 1-10 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000492936
Accession number AK298312.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Solute carrier family 12 member 1 isoform F.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001171761)  [Identity/coverage = 100.0%/82.07%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q21.1
Position 48498499- 48580316
Strand +
Gene structure 21 exons
 
TOP 1-10 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000492899
Accession number AK298275.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Solute carrier family 12 member 1; Bumetanide-sensitive sodium-(potassium)-chloride cotransporter 2; Kidney-specific Na-K-Cl symporter;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q13621)  [Identity/coverage = 99.368%/57.6%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q21.1
Position 48521227- 48577427
Strand +
Gene structure 16 exons
 
TOP 1-10 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000059057
Accession number AB032525.1
CAGE tag ID NA
EST ID NA
Coding potential Non-protein-coding; 
Definition Non-protein-coding transcript, unclassifiable transcript.
Similarity category  Help Category: Non-protein coding transcript.
NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q21.1
Position 48518673- 48518768
Strand +
Gene structure 1 exons
 
TOP 1-10 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000059058
Accession number AB032526.1
CAGE tag ID NA
EST ID NA
Coding potential Non-protein-coding; 
Definition Non-protein-coding transcript, unclassifiable transcript.
Similarity category  Help Category: Non-protein coding transcript.
NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q21.1
Position 48518049- 48518144
Strand +
Gene structure 1 exons
 
TOP 1-10 LAST 
Locus member number 10
H-Inv ID Transcript viewHIT000059059
Accession number AB032527.1
CAGE tag ID NA
EST ID NA
Coding potential Non-protein-coding; 
Definition Non-protein-coding transcript, unclassifiable transcript.
Similarity category  Help Category: Non-protein coding transcript.
NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q21.1
Position 48519276- 48519371
Strand +
Gene structure 1 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Retained intron; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000056131Splicing isoformHIT000055714
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0026769
Representative H-Inv ID Representative H-Inv IDHIT000469077
Accession number EF559316.2
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Solute carrier family 12 member 1; Bumetanide-sensitive sodium-(potassium)-chloride cotransporter 2; Kidney-specific Na-K-Cl symporter;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q13621)  [Identity/coverage = 99.909%/100.0%] to Homo sapiens (Human). protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000200155
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:6557
KEGG GENES KEGG GENES(6557)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Gene familyGene family;  Similarity Search ToolSimilarity search tool TACTTACT
Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:27-May-2015
Disease relation Disease name: Bartter syndrome, type 1 (601678); 
Related information in OMIM OMIM ID:  600839;  Title: SOLUTE CARRIER FAMILY 12 (SODIUM/POTASSIUM/CHLORIDE TRANSPORTER),
Co-localized orphan diseases NA
Disease related mutation MutationView:  600839
JRE-1.4.0 or later is required.Download JRE at Sun's web site.
Co-occurred words and phrases with this gene name in PubMed (LEGENDA) LEGENDA Gene name Entrez Gene ID:(6557); 
Disease Entrez Gene ID:(6557); 
Gene function Entrez Gene ID:(6557); 
Substance Entrez Gene ID:(6557); 
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo ViewerLEGENDALEGENDA