H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Inv cluster ID: HIX0028697 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: E3 ubiquitin-protein ligase RNF187; EC=6.3.2.-; RING domain AP1 coactivator 1; RACO-1; RING finger protein 187;
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0028697
Genomic location  G-integra Help Chromosome 1
Location 1q42.13
Position 228674762- 228683889
Strand +
Antisense cluster ID(s) HIX0028711 overlap at CDSs (all)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:149603
KEGG GENES KEGG GENES(149603)
GeneCard GeneCardRNF187*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000087929HIT000261401HIT000265907HIT000086986HIT000085886HIT000259291
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS;  G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-6 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000087929
Accession number BC012758.2
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition E3 ubiquitin-protein ligase RNF187; EC=6.3.2.-; RING domain AP1 coactivator 1; RACO-1; RING finger protein 187;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q5TA31)  [Identity/coverage = 99.574%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol RNF187 
HGNC aliases NA
HGNC name ring finger protein 187 
Transcript feature Representative H-Inv IDRepresentative transcript; 
Genomic location  G-integra Chromosome 1
Location 1q42.13
Position 228675094- 228682670
Strand +
Gene structure 4 exons
 
TOP 1-6 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000261401
Accession number BC064481.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to E3 ubiquitin-protein ligase RNF187.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001010858)  [Identity/coverage = 100.0%/51.06%] to Homo sapiens protein.
Gene symbol/name HGNC symbol RNF187 
HGNC aliases NA
HGNC name ring finger protein 187 
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1q42.13
Position 228675534- 228682674
Strand +
Gene structure 4 exons
 
TOP 1-6 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000265907
Accession number BC080645.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to E3 ubiquitin-protein ligase RNF187.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_001010858)  [Identity/coverage = 100.0%/51.06%] to Homo sapiens protein.
Gene symbol/name HGNC symbol RNF187 
HGNC aliases NA
HGNC name ring finger protein 187 
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1q42.13
Position 228675534- 228682674
Strand +
Gene structure 4 exons
 
TOP 1-6 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000086986
Accession number BC008022.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol RNF187 
HGNC aliases NA
HGNC name ring finger protein 187 
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1q42.13
Position 228680944- 228682670
Strand +
Gene structure 2 exons
 
TOP 1-6 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000085886
Accession number BC000821.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol RNF187 
HGNC aliases NA
HGNC name ring finger protein 187 
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1q42.13
Position 228681916- 228682670
Strand +
Gene structure 1 exons
 
TOP 1-6 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000259291
Accession number BC053571.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol RNF187 
HGNC aliases NA
HGNC name ring finger protein 187 
Transcript feature NA
Genomic location  G-integra Chromosome 1
Location 1q42.13
Position 228681944- 228682670
Strand +
Gene structure 1 exons

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0028697
Representative H-Inv ID Representative H-Inv IDHIT000087929
Accession number BC012758.2
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition E3 ubiquitin-protein ligase RNF187; EC=6.3.2.-; RING domain AP1 coactivator 1; RACO-1; RING finger protein 187;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q5TA31)  [Identity/coverage = 99.574%/100.0%] to Homo sapiens (Human). protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol RNF187 
HGNC aliases NA
HGNC name ring finger protein 187 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000137897
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:149603
KEGG GENES KEGG GENES(149603)
GeneCard GeneCardRNF187*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS;  Gene familyGene family;  Similarity Search ToolSimilarity search tool TACTTACT
Gene expression information   H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene AGhsB191110; 
Affymetrix
GeneChip
HG-Focus NA
HG-U133 212155_at;  228470_at;  229207_x_at; 
HG-U133A 212155_at; 
HG-U133A_2 212155_at; 
HG-U133B 228470_at;  229207_x_at; 
HG-U133_Plus_2 212155_at;  228470_at;  229207_x_at; 
HG-U95 39722_at;  89132_r_at; 
HG-U95A 39722_at; 
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E 89132_r_at; 
HG-U95Av2 NA
HuEx-1_0 2384301;  2384303;  2384305;  2384307;  2384309;  2384313;  2384315;  2384317;  2384319;  2384327;  2459622;  2459623; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 A_24_P23995; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator