H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Inv cluster ID: HIX0030010 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: BRCA1-associated RING domain protein 1; BARD-1; EC=6.3.2.-;
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0030010
Genomic location  G-integra Help Chromosome 2
Location 2q35
Position 215590370- 215674428
Strand -
Antisense cluster ID(s) NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:580
KEGG GENES KEGG GENES(580)
GeneCard GeneCardBARD1*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000389018HIT000331189HIT000221303HIT000389020HIT000433126HIT000653778HIT000496467HIT000653780HIT000653779HIT000653781HIT000653782HIT000653783HIT000653784
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-10 11-13 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000389018
Accession number BC126426.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BRCA1-associated RING domain protein 1; BARD-1; EC=6.3.2.-;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q99728)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol BARD1 
HGNC aliases NA
HGNC name BRCA1 associated RING domain 1 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q35
Position 215593345- 215674363
Strand -
Gene structure 11 exons
 
TOP 1-10 11-13 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000331189
Accession number AK223409.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BRCA1-associated RING domain protein 1; BARD-1; EC=6.3.2.-;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q99728)  [Identity/coverage = 99.228%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol BARD1 
HGNC aliases NA
HGNC name BRCA1 associated RING domain 1 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q35
Position 215593294- 215674428
Strand -
Gene structure 11 exons
 
TOP 1-10 11-13 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000221303
Accession number U76638.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BRCA1-associated RING domain protein 1; BARD-1; EC=6.3.2.-;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q99728)  [Identity/coverage = 99.871%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol BARD1 
HGNC aliases NA
HGNC name BRCA1 associated RING domain 1 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q35
Position 215593277- 215674366
Strand -
Gene structure 11 exons
 
TOP 1-10 11-13 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000389020
Accession number BC126428.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BRCA1-associated RING domain protein 1; BARD-1; EC=6.3.2.-;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q99728)  [Identity/coverage = 99.614%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol BARD1 
HGNC aliases NA
HGNC name BRCA1 associated RING domain 1 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q35
Position 215593345- 215674363
Strand -
Gene structure 11 exons
 
TOP 1-10 11-13 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000433126
Accession number AK314260.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BRCA1-associated RING domain protein 1; BARD-1; EC=6.3.2.-;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q99728)  [Identity/coverage = 99.614%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol BARD1 
HGNC aliases NA
HGNC name BRCA1 associated RING domain 1 
Transcript feature NA
Genomic location  G-integra Chromosome 2
Location 2q35
Position 215593400- 215674395
Strand -
Gene structure 11 exons
 
TOP 1-10 11-13 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000653778
Accession number JF790280.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to BRCA1-associated RING domain protein 1; BARD-1; EC=6.3.2.-;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q99728)  [Identity/coverage = 99.736%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol BARD1 
HGNC aliases NA
HGNC name BRCA1 associated RING domain 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q35
Position 215593277- 215674366
Strand -
Gene structure 10 exons
 
TOP 1-10 11-13 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000496467
Accession number AK301843.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to BRCA1-associated RING domain protein 1; BARD-1; EC=6.3.2.-;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q99728)  [Identity/coverage = 99.721%/98.84%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol BARD1 
HGNC aliases NA
HGNC name BRCA1 associated RING domain 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q35
Position 215593428- 215674397
Strand -
Gene structure 10 exons
 
TOP 1-10 11-13 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000653780
Accession number JF790282.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to BRCA1-associated RING domain protein 1; BARD-1; EC=6.3.2.-;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q99728)  [Identity/coverage = 99.174%/15.57%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol BARD1 
HGNC aliases NA
HGNC name BRCA1 associated RING domain 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q35
Position 215593401- 215674366
Strand -
Gene structure 10 exons
 
TOP 1-10 11-13 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000653779
Accession number JF790281.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to BRCA1-associated RING domain protein 1; BARD-1; EC=6.3.2.-;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q99728)  [Identity/coverage = 99.848%/84.43%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol BARD1 
HGNC aliases NA
HGNC name BRCA1 associated RING domain 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q35
Position 215593277- 215674366
Strand -
Gene structure 9 exons
 
TOP 1-10 11-13 LAST 
Locus member number 10
H-Inv ID Transcript viewHIT000653781
Accession number JF790283.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to BRCA1-associated RING domain protein 1; BARD-1; EC=6.3.2.-;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q99728)  [Identity/coverage = 98.63%/9.4%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol BARD1 
HGNC aliases NA
HGNC name BRCA1 associated RING domain 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q35
Position 215593399- 215674321
Strand -
Gene structure 7 exons
 
TOP 1-10 11-13 LAST 
Locus member number 11
H-Inv ID Transcript viewHIT000653782
Accession number JF790284.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to BRCA1-associated RING domain protein 1; BARD-1; EC=6.3.2.-;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q99728)  [Identity/coverage = 90.164%/7.85%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol BARD1 
HGNC aliases NA
HGNC name BRCA1 associated RING domain 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q35
Position 215593286- 215674366
Strand -
Gene structure 6 exons
 
TOP 1-10 11-13 LAST 
Locus member number 12
H-Inv ID Transcript viewHIT000653783
Accession number JF790285.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to BRCA1-associated RING domain protein 1; BARD-1; EC=6.3.2.-;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q99728)  [Identity/coverage = 94.615%/16.73%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol BARD1 
HGNC aliases NA
HGNC name BRCA1 associated RING domain 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q35
Position 215593443- 215674321
Strand -
Gene structure 5 exons
 
TOP 1-10 11-13 LAST 
Locus member number 13
H-Inv ID Transcript viewHIT000653784
Accession number JF790286.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to BRCA1-associated RING domain protein 1; BARD-1; EC=6.3.2.-;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9QZH2)  [Identity/coverage = 80.282%/18.49%] to Rattus norvegicus (Rat). protein.
Gene symbol/name HGNC symbol BARD1 
HGNC aliases NA
HGNC name BRCA1 associated RING domain 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 2
Location 2q35
Position 215593400- 215674407
Strand -
Gene structure 3 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Cassette;  Mutually exclusive; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000653784Splicing isoformHIT000653782Splicing isoformHIT000653783Splicing isoformHIT000653780Splicing isoformHIT000653781Splicing isoformHIT000389018Splicing isoformHIT000653779Splicing isoformHIT000653778Splicing isoformHIT000496467
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0030010
Representative H-Inv ID Representative H-Inv IDHIT000389018
Accession number BC126426.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition BRCA1-associated RING domain protein 1; BARD-1; EC=6.3.2.-;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q99728)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol BARD1 
HGNC aliases NA
HGNC name BRCA1 associated RING domain 1 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000083039
No. of interaction 10
Interaction partner(s) HIP000024983HIP000031955HIP000055213HIP000055213HIP000078380HIP000078380HIP000103557HIP000108912HIP000130328HIP000132404
BIND 182021;  182022;  182023;  182024;  182025;  182026;  182027;  182028;  182029;  182031;  182032;  182033;  182034;  182035;  182036;  182037;  182038;  295813;  295815; 
DIP 10813E;  133748E;  40082E; 
MINT MINT-25055;  MINT-3978654;  MINT-3978671;  MINT-3978688;  MINT-3978705;  MINT-3978722;  MINT-3978739;  MINT-3978756;  MINT-3978773;  MINT-3978790;  MINT-3978824;  MINT-3978841;  MINT-3978858;  MINT-3978875;  MINT-3978907;  MINT-3978950;  MINT-3978967;  MINT-3978984;  MINT-3981482;  MINT-3981578;  MINT-3981594;  MINT-3981690;  MINT-3981706;  MINT-7898584;  MINT-7898597;  MINT-7898609;  MINT-7898631;  MINT-7898660;  MINT-7898677; 
HPRD 00179;  00389;  00592;  01071;  01199;  01250;  01456;  01859;  02652;  02653;  02972;  03245;  04763;  04990;  05149;  06577;  06612;  06828;  06910;  07135;  08916;  09212;  10161;  10379;  10393;  11482;  12531;  13759;  16252;  16348;  17212; 
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:580
KEGG GENES KEGG GENES(580)
GeneCard GeneCardBARD1*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Gene familyGene family;  Similarity Search ToolSimilarity search tool TACTTACT
Disease/pathology information  DiseaseInfo Viewer LEGENDA Last modified:27-May-2015
Disease relation Disease name: {Breast cancer, susceptibility to} (114480); 
Related information in OMIM OMIM ID:  601593;  Title: BRCA1-ASSOCIATED RING DOMAIN 1
Co-localized orphan diseases NA
Disease related mutation MutationView:  601593
JRE-1.4.0 or later is required.Download JRE at Sun's web site.
Co-occurred words and phrases with this gene name in PubMed (LEGENDA) LEGENDA Gene name Entrez Gene ID:(580); 
Disease Entrez Gene ID:(580); 
Gene function Entrez Gene ID:(580); 
Substance Entrez Gene ID:(580); 
Related H-InvDB links DiseaseInfo ViewerDiseaseInfo ViewerLEGENDALEGENDA