H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Inv cluster ID: HIX0032809 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to T-box transcription factor TBX18; T-box protein 18;
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0032809
Genomic location  G-integra Help Chromosome 6
Location 6q14.3
Position 85397069- 85474237
Strand -
Antisense cluster ID(s) NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:9096
KEGG GENES KEGG GENES(9096)
GeneCard GeneCardTBX18*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000096335HIT000503396HIT000390768HIT000429045HIT000244402
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-5 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000096335
Accession number BC040697.2
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to T-box transcription factor TBX18; T-box protein 18;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (O95935)  [Identity/coverage = 100.0%/44.32%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol TBX18 
HGNC aliases NA
HGNC name T-box 18 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6
Location 6q14.3
Position 85397080- 85473171
Strand -
Gene structure 9 exons
 
TOP 1-5 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000503396
Accession number BC157841.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition T-box transcription factor TBX18; T-box protein 18;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (O95935)  [Identity/coverage = 99.835%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol TBX18 
HGNC aliases NA
HGNC name T-box 18 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6
Location 6q14.3
Position 85443880- 85473939
Strand -
Gene structure 8 exons
 
TOP 1-5 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000390768
Accession number BC132715.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition T-box transcription factor TBX18; T-box protein 18;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (O95935)  [Identity/coverage = 99.835%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol TBX18 
HGNC aliases NA
HGNC name T-box 18 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6q14.3
Position 85446314- 85473954
Strand -
Gene structure 8 exons
 
TOP 1-5 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000429045
Accession number AK310179.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to T-box transcription factor TBX18; T-box protein 18;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (O95935)  [Identity/coverage = 99.58%/39.21%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol TBX18 
HGNC aliases NA
HGNC name T-box 18 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 6
Location 6q14.3
Position 85451742- 85473166
Strand -
Gene structure 7 exons
 
TOP 1-5 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000244402
Accession number AJ010278.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to T-box transcription factor TBX18; T-box protein 18;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (O95935)  [Identity/coverage = 100.0%/29.82%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol TBX18 
HGNC aliases NA
HGNC name T-box 18 
Transcript feature NA
Genomic location  G-integra Chromosome 6
Location 6q14.3
Position 85453997- 85472317
Strand -
Gene structure 5 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  3' terminal AS; 
Position of alternative splicing isoforms NA
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000096335Splicing isoformHIT000429045Splicing isoformHIT000503396
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0032809
Representative H-Inv ID Representative H-Inv IDHIT000096335
Accession number BC040697.2
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to T-box transcription factor TBX18; T-box protein 18;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (O95935)  [Identity/coverage = 100.0%/44.32%] to Homo sapiens (Human). protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol TBX18 
HGNC aliases NA
HGNC name T-box 18 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000013770
No. of interaction 1
Interaction partner(s) HIP000028818
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:9096
KEGG GENES KEGG GENES(9096)
GeneCard GeneCardTBX18*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Gene familyGene family;  Similarity Search ToolSimilarity search tool TACTTACT
Gene expression information   H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 NA
HG-U133A NA
HG-U133A_2 NA
HG-U133B NA
HG-U133_Plus_2 1559839_at;  1559840_s_at; 
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 2963144;  2963145;  2963157;  2963159;  2963160;  2963161;  2963162;  2963164; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 A_23_P134041; 
Whole Human Genome Oligo Microarray:PGID247 A_23_P134041; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator