H-InvDB x AHG DB
Locus view
H-InvDB_9.0 released on May 27, 2015.
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H-Inv cluster ID: HIX0034283 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Collagen alpha-1(XXII) chain; Precursor;
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0034283
Genomic location  G-integra Help Chromosome 8
Location 8q24.23-8q24.3
Position 139600478- 139926249
Strand -
Antisense cluster ID(s) NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:169044
KEGG GENES KEGG GENES(169044)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000079163HIT000502943HIT000097104
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-3 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000079163
Accession number AF406780.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Collagen alpha-1(XXII) chain; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q8NFW1)  [Identity/coverage = 99.938%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 8
Location 8q24.23-8q24.3
Position 139600478- 139926236
Strand -
Gene structure 65 exons
 
TOP 1-3 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000502943
Accession number BC144535.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Collagen alpha-1(XXII) chain precursor.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_690848)  [Identity/coverage = 73.466%/38.38%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature NA
Genomic location  G-integra Chromosome 8
Location 8q24.23-8q24.3
Position 139601140- 139895454
Strand -
Gene structure 52 exons
 
TOP 1-3 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000097104
Accession number BC042075.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Collagen alpha-1(III) chain;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P04258)  [Identity/coverage = 54.839%/11.82%] to Bos taurus (Bovine). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 8
Location 8q24.23-8q24.3
Position 139600484- 139734436
Strand -
Gene structure 39 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Cassette; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000097104Splicing isoformHIT000079163
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0034283
Representative H-Inv ID Representative H-Inv IDHIT000079163
Accession number AF406780.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Collagen alpha-1(XXII) chain; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (Q8NFW1)  [Identity/coverage = 99.938%/100.0%] to Homo sapiens (Human). protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000027545
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:169044
KEGG GENES KEGG GENES(169044)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Gene familyGene family;  Similarity Search ToolSimilarity search tool TACTTACT
Gene expression information   H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 228873_at;  243301_at; 
HG-U133A NA
HG-U133A_2 NA
HG-U133B 228873_at;  243301_at; 
HG-U133_Plus_2 228873_at;  243301_at; 
HG-U95 66468_at;  71657_at;  76528_at; 
HG-U95A NA
HG-U95B NA
HG-U95C 66468_at; 
HG-U95D NA
HG-U95E 71657_at;  76528_at; 
HG-U95Av2 NA
HuEx-1_0 2374205;  2374206;  2450232;  2450241;  3117929;  3117931;  3117933;  3155639;  3155640;  3155641;  3155642;  3155643;  3155644;  3155646;  3155648;  3155649;  3155651;  3155653;  3155654;  3155657;  3155662;  3155663;  3155667;  3155668;  3155670;  3155672;  3155673;  3155674;  3155676;  3155677;  3155679;  3155680;  3155681;  3155683;  3155689;  3155691;  3155693;  3155695;  3155696;  3155697;  3155699;  3155700;  3155703;  3155706;  3155708;  3155710;  3155711;  3155712;  3155715;  3155717;  3155720;  3155721;  3155726;  3155728;  3155729;  3155730;  3155731;  3155734;  3155735;  3155741;  3155747;  3155750;  3155752;  3155760;  3155761;  3155762;  3155765;  3155767;  3155771;  3155773;  3155776;  3155778;  3155785;  3155788;  3155789;  3155792; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 A_32_P405759; 
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator