H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Inv cluster ID: HIX0038125 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Thrombospondin-1; Precursor;
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0038125
Genomic location  G-integra Help Chromosome 15
Location 15q14
Position 39873279- 39891667
Strand +
Antisense cluster ID(s) HIX0222639 only overlap at UTR
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:7057
KEGG GENES KEGG GENES(7057)
GeneCard GeneCardTHBS1*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000500487HIT000500486HIT000321462HIT000321055HIT000424436HIT000329847HIT000499378HIT000429686HIT000195002HIT000091508HIT000194328HIT000487854HIT000197037HIT000428479HIT000088569
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-10 11-15 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000500487
Accession number BC136470.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Thrombospondin-1; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P07996)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol THBS1 
HGNC aliases NA
HGNC name thrombospondin 1 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 15
Location 15q14
Position 39873306- 39888860
Strand +
Gene structure 22 exons
 
TOP 1-10 11-15 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000500486
Accession number BC136469.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Thrombospondin-1; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P07996)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol THBS1 
HGNC aliases NA
HGNC name thrombospondin 1 
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q14
Position 39873306- 39888856
Strand +
Gene structure 22 exons
 
TOP 1-10 11-15 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000321462
Accession number X14787.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Thrombospondin-1; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P07996)  [Identity/coverage = 99.915%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol THBS1 
HGNC aliases NA
HGNC name thrombospondin 1 
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q14
Position 39873348- 39889665
Strand +
Gene structure 22 exons
 
TOP 1-10 11-15 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000321055
Accession number X04665.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Thrombospondin-1; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P07996)  [Identity/coverage = 99.915%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol THBS1 
HGNC aliases NA
HGNC name thrombospondin 1 
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q14
Position 39873384- 39888415
Strand +
Gene structure 22 exons
 
TOP 1-10 11-15 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000424436
Accession number AK291639.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Thrombospondin-1; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P07996)  [Identity/coverage = 99.744%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol THBS1 
HGNC aliases NA
HGNC name thrombospondin 1 
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q14
Position 39873280- 39887823
Strand +
Gene structure 22 exons
 
TOP 1-10 11-15 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000329847
Accession number AB209912.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Thrombospondin-1; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P07996)  [Identity/coverage = 99.915%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol THBS1 
HGNC aliases NA
HGNC name thrombospondin 1 
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q14
Position 39873294- 39887796
Strand +
Gene structure 22 exons
 
TOP 1-10 11-15 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000499378
Accession number AK304754.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Thrombospondin-1; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P07996)  [Identity/coverage = 99.626%/91.37%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol THBS1 
HGNC aliases NA
HGNC name thrombospondin 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 15
Location 15q14
Position 39873279- 39887753
Strand +
Gene structure 22 exons
 
TOP 1-10 11-15 LAST 
Locus member number 8
H-Inv ID Transcript viewHIT000429686
Accession number AK310820.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Cartilage oligomeric matrix protein; COMP; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (Q9R0G6)  [Identity/coverage = 58.689%/86.49%] to Mus musculus (Mouse). protein.
Gene symbol/name HGNC symbol THBS1 
HGNC aliases NA
HGNC name thrombospondin 1 
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q14
Position 39880801- 39887813
Strand +
Gene structure 12 exons
 
TOP 1-10 11-15 LAST 
Locus member number 9
H-Inv ID Transcript viewHIT000195002
Accession number M25631.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Thrombospondin-1; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P07996)  [Identity/coverage = 100.0%/33.93%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol THBS1 
HGNC aliases NA
HGNC name thrombospondin 1 
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q14
Position 39873365- 39879618
Strand +
Gene structure 8 exons
 
TOP 1-10 11-15 LAST 
Locus member number 10
H-Inv ID Transcript viewHIT000091508
Accession number BC028145.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Thrombospondin-1; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P07996)  [Identity/coverage = 100.0%/34.27%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol THBS1 
HGNC aliases NA
HGNC name thrombospondin 1 
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q14
Position 39874026- 39879631
Strand +
Gene structure 7 exons
 
TOP 1-10 11-15 LAST 
Locus member number 11
H-Inv ID Transcript viewHIT000194328
Accession number M14326.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Thrombospondin-1 family protein.
Similarity category  Help Category: IPR domain containing protein(Category III).
InterPro domain (IPR028499) -containing protein.
Gene symbol/name HGNC symbol THBS1 
HGNC aliases NA
HGNC name thrombospondin 1 
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q14
Position 39873346- 39877767
Strand +
Gene structure 7 exons
 
TOP 1-10 11-15 LAST 
Locus member number 12
H-Inv ID Transcript viewHIT000487854
Accession number AK293230.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Thrombospondin-1; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P07996)  [Identity/coverage = 98.214%/9.57%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol THBS1 
HGNC aliases NA
HGNC name thrombospondin 1 
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q14
Position 39880864- 39888763
Strand +
Gene structure 4 exons
 
TOP 1-10 11-15 LAST 
Locus member number 13
H-Inv ID Transcript viewHIT000197037
Accession number M99425.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Thrombospondin-1; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P07996)  [Identity/coverage = 100.0%/12.22%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol THBS1 
HGNC aliases NA
HGNC name thrombospondin 1 
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q14
Position 39885682- 39887823
Strand +
Gene structure 4 exons
 
TOP 1-10 11-15 LAST 
Locus member number 14
H-Inv ID Transcript viewHIT000428479
Accession number AK309613.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Thrombospondin-2; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (P35440)  [Identity/coverage = 62.791%/3.65%] to Gallus gallus (Chicken). protein.
Gene symbol/name HGNC symbol THBS1 
HGNC aliases NA
HGNC name thrombospondin 1 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 15
Location 15q14
Position 39883391- 39888207
Strand +
Gene structure 3 exons
 
TOP 1-10 11-15 LAST 
Locus member number 15
H-Inv ID Transcript viewHIT000088569
Accession number BC015134.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Hypothetical protein.
Similarity category  Help Category: Hypothetical protein(Category V).
Hypothetical protein.
Gene symbol/name HGNC symbol THBS1 
HGNC aliases NA
HGNC name thrombospondin 1 
Transcript feature NA
Genomic location  G-integra Chromosome 15
Location 15q14
Position 39889780- 39890885
Strand +
Gene structure 1 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 5' terminal AS;  Internal AS; 
Position of alternative splicing isoforms Cassette;  Internal acceptor site;  Internal donor site; 
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000499378Splicing isoformHIT000500487Splicing isoformHIT000428479
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0038125
Representative H-Inv ID Representative H-Inv IDHIT000500487
Accession number BC136470.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Thrombospondin-1; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (P07996)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene family/group Gene family H-Inv gene family/group ID HIF0001561
Gene family/group name Thrombospondin, type 1 repeat (IPR000884).
Evidence motif (InterPro) ID 2
Gene symbol/name HGNC symbol THBS1 
HGNC aliases NA
HGNC name thrombospondin 1 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000057717
No. of interaction 48
Interaction partner(s) HIP000021313HIP000023509HIP000023747HIP000024164HIP000024824HIP000027016HIP000027257HIP000028292HIP000028380HIP000036928HIP000041711HIP000041711HIP000045337HIP000047598HIP000057663HIP000057663HIP000059227HIP000059743HIP000059743HIP000069593HIP000070210HIP000072382HIP000073909HIP000076347HIP000077576HIP000077576HIP000080223HIP000083808HIP000091495HIP000092945HIP000092945HIP000094401HIP000096771HIP000100516HIP000101984HIP000102780HIP000102780HIP000104448HIP000105099HIP000105735HIP000105991HIP000108277HIP000109841HIP000112810HIP000118965HIP000144489HIP000168026HIP000337135
BIND 149884;  262281;  262282;  262283; 
DIP 104162E;  184751E; 
MINT NA
HPRD 00138;  00169;  00289;  00358;  00361;  00362;  00365;  00368;  00386;  00387;  00501;  00519;  00554;  00601;  00619;  00626;  00812;  00901;  01032;  01064;  01417;  01428;  01430;  01488;  01631;  01821;  01852;  01919;  01970;  02680;  03017;  03562;  03772;  04032;  04043;  04045;  04616;  05414;  15935; 
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:7057
KEGG GENES KEGG GENES(7057)
GeneCard GeneCardTHBS1*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Thrombospondin, type 1 repeat (IPR000884). Similarity Search ToolSimilarity search tool TACTTACT