H-InvDB x AHG DB
Locus view
H-InvDB_9.0 released on May 27, 2015.
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H-Inv cluster ID: HIX0038310 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Similar to RNA polymerase II elongation factor ELL.
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0038310
Genomic location  G-integra Help Chromosome 15
Location 15q11.2
Position 23388289- 23393942
Strand +
Antisense cluster ID(s) HIX0172863 only overlap at UTR
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:100132101
KEGG GENES KEGG GENES(100132101)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000087975HIT000065844
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-2 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000087975
Accession number BC012949.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to RNA polymerase II elongation factor ELL.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_006523)  [Identity/coverage = 100.0%/7.25%] to Homo sapiens protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 15
Location 15q11.2
Position 23390722- 23393942
Strand +
Gene structure 3 exons
 
TOP 1-2 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000065844
Accession number AF071178.2
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to E3 ubiquitin-protein ligase HERC2; EC=6.3.2.-; HECT domain and RCC1-like domain-containing protein 2;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (O95714)  [Identity/coverage = 85.714%/1.01%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 15
Location 15q11.2
Position 23390721- 23391872
Strand +
Gene structure 2 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 3' terminal AS;  Internal AS; 
Position of alternative splicing isoforms NA
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000065844Splicing isoformHIT000087975
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0038310
Representative H-Inv ID Representative H-Inv IDHIT000087975
Accession number BC012949.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to RNA polymerase II elongation factor ELL.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_006523)  [Identity/coverage = 100.0%/7.25%] to Homo sapiens protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol NA
HGNC aliases NA
HGNC name NA
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000446884
No. of interaction NA
Interaction partner(s) NA
BIND NA
DIP NA
MINT NA
HPRD NA
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:100132101
KEGG GENES KEGG GENES(100132101)
GeneCard NA *GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Gene familyGene family;  Similarity Search ToolSimilarity search tool TACTTACT
Gene expression information   H-ANGEL DNAProbeLocator Last modified:27-May-2015
Tissue-specific expression  H-ANGEL NA
Probe
information DNAProbeLocator
AceGene NA
Affymetrix
GeneChip
HG-Focus NA
HG-U133 NA
HG-U133A NA
HG-U133A_2 NA
HG-U133B NA
HG-U133_Plus_2 NA
HG-U95 NA
HG-U95A NA
HG-U95B NA
HG-U95C NA
HG-U95D NA
HG-U95E NA
HG-U95Av2 NA
HuEx-1_0 3583924; 
HuGeneFL NA
Agilent Human 1A Oligo Microarray:PGID215 NA
Whole Human Genome Oligo Microarray:PGID247 NA
Related H-InvDB links H-ANGELH-ANGEL DNAProbeLocatorDNAProbeLocator