H-InvDB x AHG DB
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H-InvDB_9.0 released on May 27, 2015.
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H-Inv cluster ID: HIX0079168 Created date: 26-Mar-2013 Last modified: 27-May-2015
Definition: Slit homolog 1 protein; Slit-1; Multiple epidermal growth factor-like domains protein 4; Multiple EGF-like domains protein 4; Precursor;
 
 

Gene structure  G-integra H-DBAS
H-Inv cluster ID HIX0079168
Genomic location  G-integra Help Chromosome 10
Location 10q24.1
Position 98757795- 98945704
Strand -
Antisense cluster ID(s) HIX0170440 overlap at CDSs (all)
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:6585
KEGG GENES KEGG GENES(6585)
GeneCard GeneCardSLIT1*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Cluster member H-Inv ID(s) HIT000503108HIT000000330HIT000435553HIT000058508HIT000083321HIT000091490HIT000391230
Additional cluster member candidate(s) NA
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment
Mini-G Locus map Locus map

 
TOP 1-7 LAST 
Cluster member (s)  G-integra H-DBAS
Locus member number 1
H-Inv ID Transcript viewHIT000503108
Accession number BC146851.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Slit homolog 1 protein; Slit-1; Multiple epidermal growth factor-like domains protein 4; Multiple EGF-like domains protein 4; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (O75093)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SLIT1 
HGNC aliases "slit (Drosophila) homolog 1" 
HGNC name slit homolog 1 (Drosophila) 
Transcript feature Representative H-Inv IDRepresentative transcript;  Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 10
Location 10q24.1
Position 98760761- 98945596
Strand -
Gene structure 37 exons
 
TOP 1-7 LAST 
Locus member number 2
H-Inv ID Transcript viewHIT000000330
Accession number AB011537.3
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Slit homolog 1 protein; Slit-1; Multiple epidermal growth factor-like domains protein 4; Multiple EGF-like domains protein 4; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (O75093)  [Identity/coverage = 99.935%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SLIT1 
HGNC aliases "slit (Drosophila) homolog 1" 
HGNC name slit homolog 1 (Drosophila) 
Transcript feature NA
Genomic location  G-integra Chromosome 10
Location 10q24.1
Position 98757795- 98945683
Strand -
Gene structure 37 exons
 
TOP 1-7 LAST 
Locus member number 3
H-Inv ID Transcript viewHIT000435553
Accession number BC146761.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Slit homolog 1 protein; Slit-1; Multiple epidermal growth factor-like domains protein 4; Multiple EGF-like domains protein 4; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (O75093)  [Identity/coverage = 99.935%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SLIT1 
HGNC aliases "slit (Drosophila) homolog 1" 
HGNC name slit homolog 1 (Drosophila) 
Transcript feature NA
Genomic location  G-integra Chromosome 10
Location 10q24.1
Position 98757795- 98945683
Strand -
Gene structure 37 exons
 
TOP 1-7 LAST 
Locus member number 4
H-Inv ID Transcript viewHIT000058508
Accession number AB017167.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Slit homolog 1 protein; Slit-1; Multiple epidermal growth factor-like domains protein 4; Multiple EGF-like domains protein 4; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (O75093)  [Identity/coverage = 99.87%/100.0%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SLIT1 
HGNC aliases "slit (Drosophila) homolog 1" 
HGNC name slit homolog 1 (Drosophila) 
Transcript feature NA
Genomic location  G-integra Chromosome 10
Location 10q24.1
Position 98760611- 98945663
Strand -
Gene structure 37 exons
 
TOP 1-7 LAST 
Locus member number 5
H-Inv ID Transcript viewHIT000083321
Accession number AY029183.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Slit homolog 1 protein precursor.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_003052)  [Identity/coverage = 100.0%/52.87%] to Homo sapiens protein.
Gene symbol/name HGNC symbol SLIT1 
HGNC aliases "slit (Drosophila) homolog 1" 
HGNC name slit homolog 1 (Drosophila) 
Transcript feature NA
Genomic location  G-integra Chromosome 10
Location 10q24.1
Position 98791388- 98945380
Strand -
Gene structure 23 exons
 
TOP 1-7 LAST 
Locus member number 6
H-Inv ID Transcript viewHIT000091490
Accession number BC028105.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Slit homolog 2 protein; Slit-2; Contains: Slit homolog 2 protein N-product; Contains: Slit homolog 2 protein C-product; Precursor;
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (O94813)  [Identity/coverage = 74.926%/22.17%] to Homo sapiens (Human). protein.
Gene symbol/name HGNC symbol SLIT1 
HGNC aliases "slit (Drosophila) homolog 1" 
HGNC name slit homolog 1 (Drosophila) 
Transcript feature Splicing isoformSplicing isoform
Genomic location  G-integra Chromosome 10
Location 10q24.1
Position 98817500- 98945677
Strand -
Gene structure 12 exons
 
TOP 1-7 LAST 
Locus member number 7
H-Inv ID Transcript viewHIT000391230
Accession number BC139909.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Similar to Slit homolog 1 protein precursor.
Similarity category  Help Category: Similar to known protein(Category II).
Similar to known protein (NP_003052)  [Identity/coverage = 100.0%/4.3%] to Homo sapiens protein.
Gene symbol/name HGNC symbol SLIT1 
HGNC aliases "slit (Drosophila) homolog 1" 
HGNC name slit homolog 1 (Drosophila) 
Transcript feature NA
Genomic location  G-integra Chromosome 10
Location 10q24.1
Position 98944431- 98945704
Strand -
Gene structure 1 exons

Alternative splicing (AS) information  G-integra H-DBAS
Pattern of alternative splicing isoforms 3' terminal AS; 
Position of alternative splicing isoforms NA
Alternative splicing isoform H-Inv ID(s) Splicing isoformHIT000091490Splicing isoformHIT000503108
Related H-InvDB links H-DBASH-DBAS G-integraG-integra cDNA multiple alignmentcDNA-genome multiple alignment ORF multiple alignmentORF multiple alignment

Gene function information  G-integra PPI viewer H-DBAS Gene family Similarity Search Tool TACT
H-Inv cluster ID HIX0079168
Representative H-Inv ID Representative H-Inv IDHIT000503108
Accession number BC146851.1
CAGE tag ID NA
EST ID NA
Coding potential Protein coding; 
Definition Slit homolog 1 protein; Slit-1; Multiple epidermal growth factor-like domains protein 4; Multiple EGF-like domains protein 4; Precursor;
Similarity category  Help Category: Identical to known human protein(Category I).
Identical to known human protein (O75093)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens (Human). protein.
Gene family/group Gene family H-Inv gene family/group ID NA
Gene family/group name NA
Evidence motif (InterPro) ID NA
Gene symbol/name HGNC symbol SLIT1 
HGNC aliases "slit (Drosophila) homolog 1" 
HGNC name slit homolog 1 (Drosophila) 
Protein-protein interaction (PPI) PPI viewer H-Inv protein ID HIP000030159
No. of interaction 113
Interaction partner(s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
BIND NA
DIP 111789E; 
MINT NA
HPRD 02671;  03890;  06311; 
IntAct NA
Database links RefSeq NA
Ensembl NA
Entrez Gene Entrez Gene ID:6585
KEGG GENES KEGG GENES(6585)
GeneCard GeneCardSLIT1*GeneCards is provided free to academic non-profit institutions.
etc H-GOLDHuman-Gene diversity Of Life-style related Diseases
Related H-InvDB links G-integraG-integra PPI viewerPPI view H-DBASH-DBAS Gene familyGene family;  Similarity Search ToolSimilarity search tool TACTTACT