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H-Inv cluster ID: HIX0213687 Created date: 20-May-2015 Last modified: 27-May-2015 Definition: Similar to Serine/threonine-protein kinase MRCK alpha isoform A.

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Gene structure

H-Inv cluster ID		HIX0213687
Genomic location	Chromosome	1
	Location	1q42.13
	Position	227177561- 227288821
	Strand	-
Antisense cluster ID(s)		HIX0160852	overlap at CDSs (all)
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	Entrez Gene ID:8476;
	KEGG GENES	KEGG GENES(8476);
	GeneCard	NA *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Cluster member H-Inv ID(s)		HIT000306877;  HIT000057340;  HIT000000168;  HIT000023221;  HIT000056866;  HIT000010274;  HIT000259104;  HIT000389450;
Additional cluster member candidate(s)		NA
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome multiple alignment;  ORF multiple alignment;

 

TOP 1-8 LAST

Cluster member (s)

Locus member number		1
H-Inv ID		HIT000306877
Accession number		CR933723.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Serine/threonine-protein kinase MRCK alpha isoform A.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_055641)  [Identity/coverage = 99.704%/61.78%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		Representative transcript;  Splicing isoform
Genomic location	Chromosome	1
	Location	1q42.13
	Position	227181334- 227288821
	Strand	-
Gene structure		23 exons

 

TOP 1-8 LAST

Locus member number		2
H-Inv ID		HIT000057340
Accession number		BX648693.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Serine/threonine-protein kinase MRCK alpha isoform A.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_055641)  [Identity/coverage = 99.704%/61.78%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1q42.13
	Position	227181334- 227288821
	Strand	-
Gene structure		23 exons

 

TOP 1-8 LAST

Locus member number		3
H-Inv ID		HIT000000168
Accession number		AB007920.2
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Serine/threonine-protein kinase MRCK alpha; EC=2.7.11.1; CDC42-binding protein kinase alpha; DMPK-like alpha; Myotonic dystrophy kinase-related CDC42-binding kinase alpha; MRCK alpha; Myotonic dystrophy protein kinase-like alpha;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (Q5VT25)  [Identity/coverage = 99.783%/53.93%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1q42.13
	Position	227177567- 227268680
	Strand	-
Gene structure		21 exons

 

TOP 1-8 LAST

Locus member number		4
H-Inv ID		HIT000023221
Accession number		AK098391.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Serine/threonine-protein kinase MRCK alpha isoform A.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_055641)  [Identity/coverage = 99.853%/41.51%] to Homo sapiens protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		Splicing isoform
Genomic location	Chromosome	1
	Location	1q42.13
	Position	227210959- 227262076
	Strand	-
Gene structure		16 exons

 

TOP 1-8 LAST

Locus member number		5
H-Inv ID		HIT000056866
Accession number		BX648219.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Serine/threonine-protein kinase MRCK alpha; EC=2.7.11.1; CDC42-binding protein kinase alpha; DMPK-like alpha; Myotonic dystrophy kinase-related CDC42-binding kinase alpha; MRCK alpha; Myotonic dystrophy protein kinase-like alpha;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (Q5VT25)  [Identity/coverage = 99.567%/40.01%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1q42.13
	Position	227177561- 227223311
	Strand	-
Gene structure		13 exons

 

TOP 1-8 LAST

Locus member number		6
H-Inv ID		HIT000010274
Accession number		AK027000.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Serine/threonine-protein kinase MRCK alpha; EC=2.7.11.1; CDC42-binding protein kinase alpha; DMPK-like alpha; Myotonic dystrophy kinase-related CDC42-binding kinase alpha; MRCK alpha; Myotonic dystrophy protein kinase-like alpha;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (Q5VT25)  [Identity/coverage = 81.132%/2.89%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1q42.13
	Position	227191771- 227222418
	Strand	-
Gene structure		11 exons

 

TOP 1-8 LAST

Locus member number		7
H-Inv ID		HIT000259104
Accession number		BC050335.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Serine/threonine-protein kinase MRCK alpha; EC=2.7.11.1; CDC42-binding protein kinase alpha; DMPK-like alpha; Myotonic dystrophy kinase-related CDC42-binding kinase alpha; MRCK alpha; Myotonic dystrophy protein kinase-like alpha;
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (Q5VT25)  [Identity/coverage = 99.863%/42.26%] to Homo sapiens (Human). protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1q42.13
	Position	227177566- 227235656
	Strand	-
Gene structure		15 exons

 

TOP 1-8 LAST

Locus member number		8
H-Inv ID		HIT000389450
Accession number		BC127831.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Hypothetical short protein.
Similarity category		Category: Hypothetical short protein(Category VI).
		Hypothetical short protein.
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Transcript feature		NA
Genomic location	Chromosome	1
	Location	1q42.13
	Position	227179823- 227180278
	Strand	-
Gene structure		1 exons

Alternative splicing (AS) information

Pattern of alternative splicing isoforms	NA
Position of alternative splicing isoforms	NA
Alternative splicing isoform H-Inv ID(s)	HIT000023221;  HIT000306877;
Related H-InvDB links	H-DBAS;  G-integra;  cDNA-genome multiple alignment;  ORF multiple alignment;

Gene function information

H-Inv cluster ID		HIX0213687
Representative H-Inv ID		HIT000306877
Accession number		CR933723.1
CAGE tag ID		NA
EST ID		NA
Coding potential		Protein coding;
Definition		Similar to Serine/threonine-protein kinase MRCK alpha isoform A.
Similarity category		Category: Similar to known protein(Category II).
		Similar to known protein (NP_055641)  [Identity/coverage = 99.704%/61.78%] to Homo sapiens protein.
Gene family/group	H-Inv gene family/group ID	NA
	Gene family/group name	NA
	Evidence motif (InterPro) ID	NA
Gene symbol/name	HGNC symbol	NA
	HGNC aliases	NA
	HGNC name	NA
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000064680
	No. of interaction	NA
	Interaction partner(s)	NA
	BIND	NA
	DIP	NA
	MINT	NA
	HPRD	NA
	IntAct	NA
Database links	RefSeq	NA
	Ensembl	NA
	Entrez Gene	Entrez Gene ID:8476;
	KEGG GENES	KEGG GENES(8476);
	GeneCard	NA *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Related H-InvDB links		G-integra;  PPI view;  H-DBAS;  Gene family;  Similarity search tool;  TACT;

Gene expression information

Last modified:27-May-2015

Tissue-specific expression			NA
Probe information	AceGene		AGhsA111209;  AGhsB080803;
	Affymetrix GeneChip	HG-Focus	NA
		HG-U133	NA
		HG-U133A	NA
		HG-U133A_2	NA
		HG-U133B	NA
		HG-U133_Plus_2	NA
		HG-U95	NA
		HG-U95A	NA
		HG-U95B	NA
		HG-U95C	NA
		HG-U95D	NA
		HG-U95E	NA
		HG-U95Av2	NA
		HuEx-1_0	2459049;  2459050;  2459051;  2459055;  2459061;  2459062;  2459063;  2459064;  2459065;  2459066;  2459067;  2459068;  2459069;  2459070;  2459071;  2459072;  2459074;  2459076;  2459077;  2459080;  2459082;  2459084;  2459095;  2459097;  2459098;  2459099;  2459100;  2459105;  2459107;
		HuGeneFL	NA
	Agilent	Human 1A Oligo Microarray:PGID215	NA
		Whole Human Genome Oligo Microarray:PGID247	A_23_P51394;
Related H-InvDB links			H-ANGEL;  DNAProbeLocator;