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Locus view Protein view G-integra DiseaseInfo Viewer H-ANGEL Evola PPI view Gene Family/Group Hyperlink MS

H-Invitational ID: HIT000000053 Accession number: AB002345 Created date: 26-Mar-2013 Last modified: 20-Apr-2012 Definition: Period circadian protein homolog 2.

		Select format Flat file XML file Nucleotide sequence fasta Protein sequence fasta

Transcript original information Accession number AB002345.2 CAGE tag ID NA EST ID NA Clone Number hg015281 Experimental resources   NBRC ; HGPD ; Antibody (PER2) ; Catalog (PER2); Sequence data provider Provider:KDRI;  Annotation project H-Invitational FLcDNA Length of cDNA 6219[bp] (No. of exon:23)[A:1537 T:1457 G:1557 C:1668] Devision HUM Molecular type mRNA Library origin Cell type NA Tissue type brain Develpmental stage NA

Sequence quality information CDS feature Complete CDS Kozak sequence NA PolyA NA Vector/adapter sequence NA Frame shift NA Remaining intron NA Splice site acceptor (NAGNAG) CAGTAG;  Transcript quality feature NA Notes NA

GTGGTCGAGCCGCGCGCAGGGTGCGCTCGTTTGAACTGCGGTGACACCGA GGGTTGGGGACTCGAACCCCCGCTTCGCAGCTCAGGAGCCTGAGGTCCGA AAGCTTCGTTCCAGAGCCCAGCATGAATGGATACGCGGAATTTCCGCCCA GCCCCAGTAACCCCACCAAGGAGCCCGTGGAGCCCCAGCCCAGCCAGGTC CCACTGCAGGAAGATGTGGACATGAGCAGTGGCTCCAGTGGACATGAGAC CAACGAAAACTGCTCCACGGGGCGGGACTCGCAGGGCAGTGACTGTGACG ACAGTGGGAAGGAGCTGGGGATGCTGGTGGAGCCACCGGATGCCCGCCAG AGTCCAGATACCTTTAGCCTGATGATGGCAAAATCTGAACACAACCCATC TACAAGTGGCTGCAGTAGCGACCAGTCTTCGAAAGTGGACACACACAAAG AACTGATAAAAACACTAAAGGAGCTGAAGGTCCACCTCCCTGCAGACAAG AAGGCCAAGGGCAAGGCCAGTACGCTGGCCACCTTGAAGTACGCCCTCAG GAGCGTGAAGCAGGTGAAAGCCAATGAAGAGTATTACCAGCTGCTGATGT CCAGCGAGGGTCACCCCTGTGGAGCAGACGTGCCCTCCTACACCGTGGAG GAGATGGAGAGCGTTACCTCTGAGCACATTGTGAAGAATGCCGATATGTT TGCGGTGGCCGTGTCCCTGGTGTCTGGGAAGATCCTGTACATCTCTGACC AGGTTGCATCCATATTTCACTGTAAAAGAGATGCCTTCAGCGATGCCAAG TTTGTGGAGTTCCTGGCGCCTCACGATGTGGGCGTGTTCCACAGTTTCAC CTCCCCGTACAAGCTTCCCTTGTGGAGCATGTGCAGTGGAGCAGATTCTT TTACTCAAGAATGCATGGAGGAGAAATCTTTCTTTTGCCGTGTCAGTGTC CGGAAAAGCCACGAGAATGAAATCCGCTACCACCCCTTCCGCATGACGCC CTACCTGGTCAAGGTGCGGGACCAACAAGGTGCTGAGAGTCAGCTTTGCT GCCTTCTGCTGGCAGAGAGAGTGCACTCTGGTTATGAAGCCCCTAGAATT CCTCCTGAAAAGAGAATTTTTACAACCACCCATACACCAAATTGTTTGTT CCAGGATGTGGATGAAAGGGCGGTCCCTCTCCTGGGCTACCTACCTCAGG ACCTGATTGAAACCCCAGTGCTCGTGCAGCTCCACCCTAGTGACAGGCCC TTGATGCTGGCCATCCACAAAAAGATCCTGCAGTCAGGCGGGCAGCCTTT CGACTATTCTCCCATTCGGTTTCGCGCCCGGAACGGAGAGTACATCACGT TGGACACCAGCTGGTCCAGCTTCATCAACCCATGGAGCAGGAAAATCTCC TTCATCATTGGGAGGCACAAAGTCAGGGTGGGCCCTTTGAATGAGGACGT GTTTGCAGCCCACCCCTGCACAGAGGAGAAGGCCCTGCACCCCAGCATTC AGGAGCTCACAGAGCAGATCCACCGGCTCCTGCTGCAGCCCGTCCCCCAC AGCGGCTCCAGTGGCTACGGGAGTCTGGGCAGCAACGGGTCCCACGAGCA CCTTATGAGCCAGACCTCCTCCAGCGACAGCAACGGCCATGAGGACTCAC GCCGGAGGAGAGCCGAAATTTGTAAAAATGGTAACAAGACCAAAAATAGA AGTCATTATTCTCATGAATCTGGAGAACAAAAGAAAAAATCCGTTACAGA AATGCAAACTAATCCCCCAGCTGAGAAGAAAGCTGTCCCTGCCATGGAAA AGGACAGCCTGGGGGTCAGCTTCCCCGAGGAGTTGGCCTGCAAGAACCAG CCCACCTGCTCCTACCAGCAGATCAGCTGCTTGGACAGCGTCATCAGGTA CTTGGAGAGCTGCAATGAGGCTGCCACCCTGAAGAGGAAATGCGAGTTCC CAGCAAACGTCCCAGCGCTAAGGTCCAGTGATAAGCGGAAGGCCACAGTC AGCCCAGGGCCACACGCTGGAGAGGCAGAGCCGCCCTCCAGGGTGAACAG CCGCACGGGAGTAGGTACGCACCTGACCTCGCTGGCACTGCCGGGCAAGG CAGAGAGTGTGGCGTCGCTCACCAGCCAGTGCAGCTACAGCAGCACCATC GTCCATGTGGGAGACAAGAAGCCGCAGCCGGAGTTAGAGATGGTGGAAGA TGCTGCGAGTGGGCCAGAATCCCTGGACTGCCTGGCGGGCCCTGCCCTGG CCTGTGGTCTCAGCCAAGAGAAGGAGCCCTTCAAGAAGCTGGGCCTCACC AAGGAGGTACTCGCTGCACACACACAGAAGGAGGAGCAGAGCTTCCTGCA GAAGTTCAAAGAAATAAGAAAACTCAGCATTTTCCAGTCCCACTGCCATT ACTACTTGCAAGAAAGATCCAAGGGGCAGCCAAGTGAACGAACTGCCCCT GGACTAAGAAATACTTCCGGAATAGATTCACCTTGGAAAAAAACAGGAAA GAACAGAAAATTGAAGTCCAAGCGGGTCAAACCTCGAGACTCATCTGAGA GCACCGGATCTGGGGGGCCCGTGTCCGCCCGGCCCCCGCTGGTGGGCTTG AACGCCACAGCCTGGTCACCCTCAGACACGTCCCAGTCCAGCTGCCCAGC CGTGCCCTTTCCCGCCCCAGTGCCAGCAGCTTATTCACTGCCCGTGTTTC CAGCGCCAGGGACTGTGGCAGCACCCCCGGCACCTCCCCACGCCAGCTTC ACAGTGCCTGCTGTGCCCGTGGACCTCCAGCACCAGTTTGCAGTCCAGCC CCCACCTTTCCCTGCCCCTTTGGCGCCTGTCATGGCATTCATGCTACCCA GTTATTCCTTCCCCTCGGGGACCCCAAACCTGCCCCAGGCCTTCTTCCCC AGCCAGCCTCAGTTTCCGAGCCACCCCACACTCACATCCGAGATGGCCTC TGCCTCACAGCCTGAGTTCCCCAGCCGGACCTCGATCCCCAGACAGCCAT GTGCTTGTCCAGCCACCCGGGCCACCCCACCATCGGCCATGGGTAGGGCC TCCCCACCGCTCTTTCAGTCCCGCAGCAGCTCGCCCCTGCAGCTCAACCT GCTGCAGCTGGAGGAAGCCCCTGAGGGTGGCACTGGAGCCATGGGGACCA CAGGGGCCACAGAGACAGCAGCTGTAGGGGCGGACTGCAAACCTGGCACT TCTCGGGACCAGCAGCCGAAGGCGCCTCTGACCCGTGATGAACCCTCAGA CACACAGAACAGTGACGCCCTTTCCACGTCAAGCGGCCTCCTAAACCTCC TGCTGAATGAGGACCTCTGCTCAGCCTCGGGCTCTGCTGCTTCGGAGTCT CTGGGCTCCGGCTCACTGGGCTGCGACGCCTCCCCGAGTGGGGCAGGCAG TAGTGACACAAGTCATACCAGCAAATATTTTGGAAGCATTGACTCCTCAG AGAATAATCACAAAGCAAAAATGAACACTGGTATGGAAGAAAGTGAGCAT TTCATTAAGTGCGTCCTGCAGGATCCCATCTGGCTGCTGATGGCAGATGC GGACAGCAGCGTCATGATGACGTACCAGCTGCCTTCCCGAAATTTAGAAG CGGTTTTGAAGGAGGACAGAGAGAAGCTGAAGCTCCTACAGAAACTCCAG CCCAGGTTCACGGAGAGTCAGAAGCAGGAGCTGCGCGAGGTCCACCAGTG GATGCAGACGGGCGGCCTGCCCGCAGCCATCGACGTGGCAGAATGTGTTT ACTGTGAAAACAAGGAAAAAGGTAATATTTGCATACCATATGAGGAAGAT ATTCCTTCTCTGGGACTCAGCGAAGTGTCGGACACCAAAGAAGACGAAAA TGGATCCCCCTTGAATCACAGGATCGAAGAGCAGACGTAACCCCTGCCCC ACCTCAGCCCGGCAGCCAGCGAGGTACACCAGGTGGTGCTTGGAAGAGAT GAAAGATCTTCATGGCTGTTTCCACTGAAATGGACACATATGCTCATGTT GCTTTTTTTGTTTTAGAAAAAAAAACAACATAGTTTTCTGAAGGGGCGAC TTAAAACTGTGGAGAGTGGGGAGAGTTCGGAAAGAAATATGTTTTTATAT ATAAAATATATATGTGGAGTTTTGTGGGATGGGGAAGAGATTTTAGTTGT TATTTAACTTGAGAAAGACTAAGCGCCTCTTAGTGTCAGGGAAGTTGCCT CAGTGCTCCCAGAAGTCCTGTGACTGTGACGAGACCTCTGTCTGCTGCAC CAGCTGGGGACTCTGGCTTCCAGAGCTTTCCCAGGGTGTTTGGATCAGAT CAAATTTTGTCCTCTCTTGGGGACTGCTTTTTATCTGAATTATCATTTAG TCAAGGTAGAGTGTTTTTTTATACATACCAAATGGAGATAGCAGCCTCTC CTAGTTTTATTTCAAAACGTTTCACATTAAATGGTGTGAAGCGTTGTTTG GCAAACCAACAGCTTTGGCTTCTGGTGTGGTCAATATTTCAGTCTGACAT AGGTTTTGTTTGTAGTGAACAAAGTTGAAACATTTGCTCTGGACTAAAGA AGCCTAGTGGTTTGTGTGGCCAACTCCATCGGATGAATGCACACGCAGAC AGACCCTCTGTATATTTCTGCATTATTCTTGTCTCCTTTTCAGACCATGA TGGCCAATATGGAGATTAAAATATGTCATCAGTCATCTCTTTATGGTGAC TTCCCTTTGCAAACCAGGCTGTGACCAACACATGTGAGACCCAGTCCTGT TTGGTTTTCTTCCGTTGGAACCACCCAGACATCTGCTTCCACCCAGCCAA GCCCACATCACATCTCCTGGCCGAGAGCAGCCACTGCCACTCAGTCTGAC AGCTTGCGACTGCATCTGTATTTTCAGGGGTGCAGTGAGCTCACCTCTCC CACTGCACCCTGGGTTGGGTGCACAGCCCTCATTCTTTTCATGAGCCCGA CCTCTCTCGGAGCAGCTTCAGGCCTCTGCCAGTGTCCCCAGCACTTTTAG GTCATTTGGACACTTGGGGAAAAGTGAGGCCAGTCTGCCCGGCTTTTTAC AAAACCTCATGTTGCATTGTATATTCCAAAGATGGTTCAGAAAATTTAAT ATTGGTCCCTGGTGGAAATTCAAAGTTATCACTGAAGAACAGTTGACTTA AAATTGGACCAAGACTATGAGGCTTAAAAGGGACCAGGGTTTTCTTTTTT TTTTTTTTTTTTTTTTTTTTTAGATGGAGTTTCTTTTTGCCCAGGCTGGA GTGCAGTGGCGCCATCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAA GCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACCACAGGCGACTGC CACCACACCCAGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACC ATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGCGATCCACCCACC TCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCAACT GGGACCAGGGTTTTCTGTTTTTTGATGGAGGTGAAATCTCTTTGTAATCC ACTAGGTTTTCATCGTAAAACCATCTTATGCCTGACTATTAAACCTATTC TTCATAAACACAAGAACACTTTAATTTTTCGTTAATTTACAAAGTAACAT CAGCTGCCTATGCCTATGATAAGGTAGCAGTCTGCATTCTTATGGCCATT AGATGTTACAAACTCCTTGCCTCTAAAGTCAGATCATGAAGGGATAGGTG TTCATCTAAGGTTACAGTTATGTTACCGAAACACAAAACTGCCAAAATCT TACTCTGCTGTTATGAATGTTTACCATCAGCATTATTTTATCATTTAATA TGTGCTCACTGATTGTTAACTGTAGCTTCAGCGCGTGCCAAGCAGTTGAC TTAATAGGATCATCTTGTGAATTTGTTTACGTGATGCCAAGCATCAAGTC ATGTTTTCTTTAGTGTGTGTGCTTACACAGGTGTTAAACAGTTTTTCTCT ATTTTAAACTGAGCCTTCTTTTTAATATATTCCCGAAGAGATATGTAAAT AAGCTCTCAGAGTTTCTGTGATGATTTGTTGAGCCTTGCTGGACAAGTGG TTTGTTTGTGTGCAAACCAAACTTTCTTTACCCAGTGCAATAGATTTGTT TGACTGCTTGTGTCTTTTTATGACCTGTTTGCCTTTTAGAAAATTGGTAA ATAAAGCAAGTATATTTTT

Gene structure information

H-Inv cluster ID		HIX0200246
Genomic location	Chromosome	2
	Location	NA
	Position	239152686- 239197092
	Strand	-
Possible duplicated location(s)		NA
Gene structure		23 exon(s)
Database links	RefSeq	NM_022817;
	Ensembl	ENST00000254657;  ENST00000254658;  ENST00000355768;  ENST00000431832;  ENST00000440245;  ENST00000491417;
	Entrez Gene	Entrez Gene ID:8864;
	KEGG GENES	KEGG GENES(8864);
	GeneCard	PER2;  *GeneCards is provided free to academic non-profit institutions.
Related H-InvDB links		H-DBAS;  G-integra;  cDNA-genome alignment;

Predicted CDS information HIP ID HIP000080042 Predicted CDS 123..3890;  1255[aa];  Orientation:+3;  Codon Adaptation Index (CAI). 0.801 Database links RefSeq NP_073728;  UniProt O15055;  CCDS CCDS2528;

MNGYAEFPPSPSNPTKEPVEPQPSQVPLQEDVDMSSGSSGHETNENCSTG RDSQGSDCDDSGKELGMLVEPPDARQSPDTFSLMMAKSEHNPSTSGCSSD QSSKVDTHKELIKTLKELKVHLPADKKAKGKASTLATLKYALRSVKQVKA NEEYYQLLMSSEGHPCGADVPSYTVEEMESVTSEHIVKNADMFAVAVSLV SGKILYISDQVASIFHCKRDAFSDAKFVEFLAPHDVGVFHSFTSPYKLPL WSMCSGADSFTQECMEEKSFFCRVSVRKSHENEIRYHPFRMTPYLVKVRD QQGAESQLCCLLLAERVHSGYEAPRIPPEKRIFTTTHTPNCLFQDVDERA VPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQSGGQPFDYSPIRF RARNGEYITLDTSWSSFINPWSRKISFIIGRHKVRVGPLNEDVFAAHPCT EEKALHPSIQELTEQIHRLLLQPVPHSGSSGYGSLGSNGSHEHLMSQTSS SDSNGHEDSRRRRAEICKNGNKTKNRSHYSHESGEQKKKSVTEMQTNPPA EKKAVPAMEKDSLGVSFPEELACKNQPTCSYQQISCLDSVIRYLESCNEA ATLKRKCEFPANVPALRSSDKRKATVSPGPHAGEAEPPSRVNSRTGVGTH LTSLALPGKAESVASLTSQCSYSSTIVHVGDKKPQPELEMVEDAASGPES LDCLAGPALACGLSQEKEPFKKLGLTKEVLAAHTQKEEQSFLQKFKEIRK LSIFQSHCHYYLQERSKGQPSERTAPGLRNTSGIDSPWKKTGKNRKLKSK RVKPRDSSESTGSGGPVSARPPLVGLNATAWSPSDTSQSSCPAVPFPAPV PAAYSLPVFPAPGTVAAPPAPPHASFTVPAVPVDLQHQFAVQPPPFPAPL APVMAFMLPSYSFPSGTPNLPQAFFPSQPQFPSHPTLTSEMASASQPEFP SRTSIPRQPCACPATRATPPSAMGRASPPLFQSRSSSPLQLNLLQLEEAP EGGTGAMGTTGATETAAVGADCKPGTSRDQQPKAPLTRDEPSDTQNSDAL STSSGLLNLLLNEDLCSASGSAASESLGSGSLGCDASPSGAGSSDTSHTS KYFGSIDSSENNHKAKMNTGMEESEHFIKCVLQDPIWLLMADADSSVMMT YQLPSRNLEAVLKEDREKLKLLQKLQPRFTESQKQELREVHQWMQTGGLP AAIDVAECVYCENKEKGNICIPYEEDIPSLGLSEVSDTKEDENGSPLNHR IEEQT*

Motif information

	a.a. length	InterPro	Name
	68	IPR000014	PAS [Domain]
	67	IPR000014	PAS [Domain]
	85	IPR013655	PAS fold-3 [Domain]
	44	IPR000014	PAS [Domain]
	189	IPR022728	Period circadian-like, C-terminal [Domain]

Gene function information

H-Inv ID		HIT000000053
H-Inv cluster ID		HIX0200246
Accession number		AB002345.2
CAGE tag ID		NA
EST ID		NA
Transcript feature		Representative transcript;  Splicing isoform
Coding potential		Protein coding;
Definition		Period circadian protein homolog 2.
Similarity category		Category: Identical to known human protein(Category I).
		Identical to known human protein (NP_073728)  [Identity/coverage = 100.0%/100.0%] to Homo sapiens protein.
Experimental evidence		Protein evidence
PubMed ID		NA
Gene family/group	H-Inv gene family/group ID	HIF0000999
	Gene family/group name	Putative PAS fold-3 (IPR013655).
	Evidence motif (InterPro) ID	IPR013655
Gene symbol/name	HGNC symbol	PER2
	HGNC aliases	"period (Drosophila) homolog 2"
	HGNC name	period homolog 2 (Drosophila)
	DDBJ	KIAA0347
	UniProt	NA
EC number		NA
GGDB (GlycoGene Database)	Gene symbol	NA
	Familly	NA
	Designation	NA
	Expression	NA
KEGG metabolic pathway		NA
Protein-protein interaction (PPI)	H-Inv protein ID	HIP000080042
	No. of interaction	2
	Interaction partner(s)	HIP000055848;  HIP000059148;
	BIND	NA
	DIP	NA
	MINT	NA
	HPRD	NA
	IntAct	NA
Database links	RefSeq	NM_022817;
	Ensembl	ENST00000254657;  ENST00000254658;  ENST00000355768;  ENST00000431832;  ENST00000440245;  ENST00000491417;
	Entrez Gene	Entrez Gene ID:8864;
	KEGG GENES	KEGG GENES(8864);
	GeneCard	PER2;  *GeneCards is provided free to academic non-profit institutions.
	etc	Human-Gene diversity Of Life-style related Diseases;
Curation status		Human curated
Notes		NA
Related H-InvDB links		Putative PAS fold-3 (IPR013655). Similarity Search Tool;  TACT;

fRNAdb (The functional RNA database) : overlapping fRNAdb entries with H-InvDB transcripts based on the location of the genome.

NA

Gene ontology information

Molecular function	signal transducer activity (GO:0004871);
Biological process	signal transduction (GO:0007165);

Subcellular localization information

Last modified:20-Apr-2012

WoLF PSORT	nuclear;  cytosol;
Target P	Other
SOSUI	soluble protein
TMHMM	soluble protein
PTS1	Not targeted
Related H-InvDB links	LIFEdb;  JRE-1.4.0 or later is required. Download JRE at Sun's web site.

Protein structure information (GTOP)

Last modified:20-Apr-2012

Start End PDB_ID E-value Identity Coverage SCOP_ID 337 519 2btvA 2e-47 15.9 164/845 e.28.1.1 1102 1198 1mm8A 5e-04 17.5 97/100 c.55.3.4

Related H-InvDB links GTOP

Gene expression information

Last modified:20-Apr-2012

Tissue-specific expression			NA
Probe information	AceGene		NA
	Affymetrix GeneChip	HG-Focus	205251_at;
		HG-U133	205251_at;  208518_s_at;
		HG-U133A	205251_at;  208518_s_at;
		HG-U133A_2	205251_at;  208518_s_at;
		HG-U133B	NA
		HG-U133_Plus_2	205251_at;  208518_s_at;
		HG-U95	35008_at;
		HG-U95A	35008_at;
		HG-U95B	NA
		HG-U95C	NA
		HG-U95D	NA
		HG-U95E	NA
		HG-U95Av2	NA
		HuEx-1_0	2534794;  2534796;  2534798;  2605750;  2605752;  2605753;  2605754;  2605755;  2605756;  2605757;  2605758;  2605759;  2605760;  2605762;  2605764;  2605765;  2605768;  2605771;  2605772;  2605774;  2605776;  2605778;  2605780;  2605781;  2605784;  2605785;  2605788;  2605789;  2605790;  2605796;
		HuGeneFL	NA
	Agilent	Human 1A Oligo Microarray:PGID215	A_23_P209320;
		Whole Human Genome Oligo Microarray:PGID247	A_23_P209320;  A_23_P411162;
Related H-InvDB links			H-ANGEL;  DNAProbeLocator;

Disease/pathology information

Last modified:20-Apr-2012

Disease relation		Disease name: Advanced sleep phase syndrome, familial (604348);
Related information in OMIM		OMIM ID:  603426;  Title: PERIOD, DROSOPHILA, HOMOLOG OF, 2
Co-localized orphan diseases		OMIM ID:  600666;  607329;  609402;
Disease related mutation		NA
Literature-Extracted GENe-Disease Associations (LEGENDA)	Gene name	Entrez Gene ID:(8864)
	Disease	Entrez Gene ID:(8864)
	Substance	Entrez Gene ID:(8864)
Related H-InvDB links		DiseaseInfo Viewer;  LEGENDA;

Evolutionary information

Last modified:20-Apr-2012

Relationship	Species	Accession number	MGI	Links
Orthology	Rattus sp. (Rat)	AB016532		G-integra
Orthology	Gallus sp. (Chicken)	AF246956		G-integra
Orthology	Mus sp. (Mouse)	AK165556	MGI:3560558	G-integra
Orthology	Danio sp. (Zebrafish)	ENSDART00000098004		G-integra
Orthology	Monodelphis sp. (Opossum)	ENSMODT00000013601		G-integra
Orthology	Oryzias sp. (Medaka)	ENSORLT00000019353		G-integra
Orthology	Oryzias sp. (Medaka)	ENSORLT00000020794		G-integra
Orthology	Pongo sp. (Orangutan)	ENSPPYT00000015498		G-integra
Orthology	Tetraodon sp. (Tetraodon)	GSTENT00013830001		G-integra
Orthology	Tetraodon sp. (Tetraodon)	GSTENT00026769001		G-integra
Orthology	Tetraodon sp. (Tetraodon)	GSTENT00028368001		G-integra
Orthology	Takifugu sp. (Fugu)	SINFRUT00000147284		G-integra
Orthology	Macaca sp. (Macaque)	XM_001086845		G-integra
Orthology	Pan sp. (Chimpanzee)	XM_001154675		G-integra
Orthology	Equus sp. (Horse)	XM_001496867		G-integra
Orthology	Canis sp. (Dog)	XM_543306		G-integra
Orthology	Bos sp. (Cow)	XM_589710		G-integra

Phylogenetic tree [View by ATV]	Neighbor-joining (phb)
Related H-InvDB links	Evola;  dN/dS (under constraction);

Polymorphism (SNP, indel), microsatellite (Short Tandem Repeat, STR) and repeat information

Single Nucleotide Polymorphism (SNP) and indel  Location Variation dbSNP ID Strand CDS/UTR Translation 96 .. 96 T/G rs115232299 - 5'UTR 111 .. 111 C/G rs2304672 + 5'UTR 135 .. 135 G/T rs35572922 - CDS Nonsynonymous[Ala5Ser] 431 .. 431 G/T rs114545224 - CDS Synonymous[Ser103Ser] 489 .. 489 C/G rs3739068 - CDS Nonsynonymous[Pro123Ala] 490 ^ 491 -/C rs35329790 - CDS 505 .. 505 C/A rs77311618 + CDS Nonsynonymous[Ala128Asp] 524 .. 524 G/A rs34749458 - CDS Synonymous[Thr134Thr] 564 .. 564 G/A rs2340885 + CDS Nonsynonymous[Val148Met] 644 .. 644 C/T rs115349318 - CDS Synonymous[Thr174Thr] 783 .. 783 G/A rs79524310 - CDS Nonsynonymous[Ala221Thr] 800 .. 800 G/A rs116439936 - CDS Synonymous[Lys226Lys] 1049 .. 1049 C/T rs35564455 - CDS Synonymous[Cys309Cys] 1067 .. 1067 G/A rs113438735 - CDS Synonymous[Glu315Glu] 1301 .. 1301 C/T rs115692307 - CDS Synonymous[Phe393Phe] 1323 .. 1323 C/T rs77146655 + CDS Nonsynonymous[Arg401Cys] 1391 ^ 1392 -/A rs34895723 - CDS 1409 .. 1409 T/C rs75221346 + CDS Synonymous[Ile429Ile] 1548 .. 1548 C/A rs80156481 + CDS Nonsynonymous[His476Asn] 1958 .. 1958 C/T rs116369782 - CDS Synonymous[Asn612Asn] 2087 .. 2087 A/G rs2304669 + CDS Synonymous[Ala655Ala] 2106 .. 2106 A/G rs121908635 + CDS Nonsynonymous[Ser662Gly] 2113 .. 2113 C/T rs70965448 + CDS Nonsynonymous[Ala664Val] 2114 .. 2114 G/A rs2304670 + CDS Synonymous[Ala664Ala] 2117 .. 2117 G/A rs2304671 + CDS Synonymous[Ser665Ser] 2307 .. 2307 G/A rs4429421 - CDS Nonsynonymous[Val729Ile] 2440 .. 2440 G/A rs79066297 + CDS Nonsynonymous[Arg773Gln] 2468 .. 2468 C/T rs10195959 - CDS Synonymous[Ser782Ser] 2582 .. 2582 G/A rs75156302 + CDS Synonymous[Arg820Arg] 2588 .. 2588 G/A rs34409863 - CDS Synonymous[Pro822Pro] 2604 .. 2604 G/A rs55704277 - CDS Nonsynonymous[Ala828Thr] 2694 .. 2694 G/A rs79645972 + CDS Nonsynonymous[Val858Met] 2704 .. 2704 C/T rs75724304 + CDS Nonsynonymous[Ala861Val] 2705 .. 2705 G/A rs78915190 + CDS Synonymous[Ala861Ala] 2715 .. 2715 G/A rs78793960 + CDS Nonsynonymous[Val865Met] 2737 .. 2737 C/T rs78545306 + CDS Nonsynonymous[Pro872Leu] 2748 .. 2748 T/C rs78832829 + CDS Nonsynonymous[Phe876Leu] 2829 .. 2829 G/A rs35333999 - CDS Nonsynonymous[Val903Ile] 2968 .. 2968 T/A rs35998480 - CDS Nonsynonymous[Phe949Tyr] 2976 .. 2976 C/T rs80292232 + CDS Nonsynonymous[Arg952Trp] 3023 .. 3023 C/T rs3739063 - CDS Synonymous[Ala967Ala] 3032 .. 3032 A/T rs75272725 + CDS Synonymous[Pro970Pro] 3204 .. 3204 C/T rs116038195 - CDS Nonsynonymous[Arg1028Trp] 3229 .. 3229 T/C rs76234418 + CDS Nonsynonymous[Leu1036Pro] 3411 .. 3411 A/G rs111652500 - CDS Nonsynonymous[Ser1097Gly] 3542 .. 3542 G/T rs79440143 + CDS Nonsynonymous[Met1140Ile] 3662 .. 3662 G/A rs117025694 - CDS Synonymous[Thr1180Thr] 3709 .. 3709 C/T rs75060790 + CDS Nonsynonymous[Thr1196Met] 3722 .. 3722 C/T rs35873326 - CDS Synonymous[Pro1200Pro] 3735 .. 3735 G/A rs76355956 - CDS Nonsynonymous[Val1205Met] 3801 .. 3801 A/G rs78614149 + CDS Nonsynonymous[Ile1227Val] 3829 .. 3829 C/T rs73088906 - CDS Nonsynonymous[Ser1236Leu] 3853 .. 3853 G/A rs934945 + CDS Nonsynonymous[Gly1244Glu] 3962 .. 3962 A/T rs10181662 - 3'UTR 4192 .. 4192 A/T rs10181401 - 3'UTR 4370 ^ 4371 -/T rs34195482 - 3'UTR 4457 .. 4457 C/T rs28391755 - 3'UTR 4539 .. 4539 C/T rs115565634 - 3'UTR 4805 .. 4805 A/T rs62194934 - 3'UTR 4819 .. 4819 G/T rs62194933 - 3'UTR 4958 .. 4958 C/T rs56386336 - 3'UTR 5141 .. 5141 A/T rs35093813 - 3'UTR 5168 .. 5168 T/C rs118094777 - 3'UTR 5193 ^ 5194 -/T rs72207807 - 3'UTR 5194 ^ 5195 -/TTT rs71043120 - 3'UTR 5195 .. 5195 T/C rs34391080 - 3'UTR 5360 ^ 5361 -/C rs34621267 - 3'UTR 5619 .. 5619 C/T rs7563135 - 3'UTR 5784 .. 5784 C/A rs79038429 - 3'UTR 5825 .. 5825 C/T rs114881551 - 3'UTR 6035 .. 6035 G/A rs80261926 - 3'UTR 6081 .. 6081 G/T rs76734143 - 3'UTR 6189 .. 6189 G/A rs77799108 - 3'UTR  Microsatellite (Short Tandem Repeat, STR) No data available  Microsatellite: Human-Gene diversity Of Life-style related Diseases (H-GOLD) No data available

Repeat  Type Start End Strand AluSq 5191 5496 - Database links Human-Gene diversity Of Life-style related Diseases(H-GOLD);  Related H-InvDB links VaryGene;  Repeat Mask Viewer;